Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 559,654 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583559,6540GC99.3% 650.9 / NA 281intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (154/124);  total (154/127)
Fisher's exact test for biased strand distribution p-value = 2.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6550CG98.6% 640.4 / NA 281intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/4);  new base G (154/123);  total (154/127)
Fisher's exact test for biased strand distribution p-value = 4.06e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6560TA98.6% 644.5 / NA 281intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (154/119);  minor base G (0/4);  total (154/127)
Fisher's exact test for biased strand distribution p-value = 3.78e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 281 total aligned reads displayed.

GCTTTGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAAGC‑TCTCCCAGGCATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCC  >  CP042583/559374‑559931
                                                                                                                                                                                                                                                                                        ||||                                                                                                                                                                                                                                                                                   
    tGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACCCATACCCCAGCGTCATGGCGGTAAACG‑ACTCCCAGGCa                                                                                                                                                                                                                                                                           >  2:463917/1‑289 (MQ=255)
                      gccaaaaGCTGGAACAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAg                                                                                                                                                                                                                                                          <  2:1076402/284‑1 (MQ=255)
                                         atccACGGCCAGACTCGTGCCACACAAAATACCCATCACTCCCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATTTGGCAGGGAAGGGAAAATGGAACTCCATTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGACCTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGGGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                      <  2:3144317/286‑1 (MQ=255)
                                           tCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccgc                                                                                                                                                                                                                                     >  1:2083663/1‑288 (MQ=255)
                                           tCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGGACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGGCATCACCAGCATGATAAAAGCGTTAATCCACACATACGCCAGCGTCATGGCGGTAAACG‑ACTCCCAGGCATCGGCAGAGTTATCGAGCAATTTAACCCTCTgccgcgc                                                                                                                                                                                                                                     >  2:2194935/1‑283 (MQ=255)
                                             aCCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGAGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCttccgccccat                                                                                                                                                                                                                                  >  2:2904398/1‑279 (MQ=255)
                                              ccGCCAGCATCGTGCCCCACAAAATGCCCAACGCTCCCCCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCata                                                                                                                                                                                                                                 <  2:283603/289‑1 (MQ=255)
                                                            ccccACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGAt                                                                                                                                                                                                                   >  2:258040/1‑289 (MQ=255)
                                                                       aCCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGtcgaggcga                                                                                                                                                                                                        >  1:1693049/1‑281 (MQ=255)
                                                                           aTCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                  <  1:1243984/259‑1 (MQ=255)
                                                                           aTCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑AATCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCCGATCCACCAGACAGATAGTCGAGGCGACGGc                                                                                                                                                                                                    >  1:854635/1‑289 (MQ=255)
                                                                                 caccccgTGACGGTGGTTTTAAGGGTGAACACCAGCCCGACGAGCAGATATGGCAGGGAAGGGAAAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGtt                                                                                                                                                                                              <  2:270636/285‑1 (MQ=255)
                                                                                       gTGACGGGGATTTGCAGTGTGATCCCAAGCCCTACGTGCAAATATGGCGGGCAAGGGACATGAGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGACAGCCAGGCGAACTTTCCGTTCAACCAGCGGCATCACCAGCATGATAAAAGCGTTAGTCAACACGTACGCCAGCGTAATGGCGGTAAACG‑GCTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAc                                                                                                                                                                                        <  2:1787888/289‑1 (MQ=255)
                                                                                        tGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg                                                                                                                                                                                                   <  1:404990/277‑1 (MQ=255)
                                                                                           cGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAgg                                                                                                                                                                                    <  1:2879550/289‑1 (MQ=255)
                                                                                                tttttCAGGTGGATCACAAGCCCGTCAGCCCGATGTGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTAAATAATTTGCCCCCCATGTTGCAAGGAAGGCGAACTTTACGTTCAACCAGCGTCATGACCAGCATGATAAAGGCGTTAATCAACACGTACGCCAGCGTAATGGCGGTAAACG‑ACTCCCGGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGGCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  2:1589234/288‑1 (MQ=255)
                                                                                                aTTTTCAGGGTGATCACAAGCCCGTCGGGCAGATATGGCAGGTAAGGGACAATGAAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATAATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:2194935/289‑1 (MQ=255)
                                                                                                 ttttCAGGGTGGTTAACGACCCTACCAGCAGTTAATGCAGGGAAGGGAACTGGGAACTCCAGTCCAACTCCTAACTTATTTGCGCCCCATGTTGCCAGGCAGACGACCTTTACGTTCAACCAGCGTCATCACCAGCCTGATAAAAGCGTGAAGCAACACATACGCCAGGGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGGGTTTTTCACCAGGTtcat                                                                                                                                                                               <  2:480411/288‑1 (MQ=255)
                                                                                                 ttttCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:1137198/288‑1 (MQ=255)
                                                                                                 ttttCAGGGGGATCACCAGCCCGTCGATCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc                                                                                                                                                                              <  1:2451782/289‑1 (MQ=255)
                                                                                                 tttaCAGGTTGATCACCGGCCGTTGGGGCAGATAGGGCGGGGAAGGGACAAGGGAACCCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc                                                                                                                                                                              <  2:1870642/289‑1 (MQ=255)
                                                                                                  tttCGGGGTGCTCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTCCATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:2283229/287‑1 (MQ=255)
                                                                                                            aTCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATAACCACCAGACCGATAGTCGAGGCGATGGCGGAGGTTTTCACCAGGGTCATGAtctccgagga                                                                                                                                                                   >  1:3126706/1‑283 (MQ=255)
                                                                                                            aTCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGAAATTTAACCGCCTGCGCCGCCATAACCACCAGACCGATAGTCGAGGCGATGGAGGGGGTTCTCACCATGGTCAACAtatctgcgtg                                                                                                                                                                   >  2:2283229/1‑283 (MQ=255)
                                                                                                              cACCAGCCCGGCGAGCAGATAGGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGGACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCGGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCTAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacca                                                                                                                                                                                                                          <  2:1894665/232‑1 (MQ=255)
                                                                                                                    cccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcg                                                                                                                                                                                                                                         <  1:1808654/211‑1 (MQ=255)
                                                                                                                    cccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcg                                                                                                                                                           >  1:278200/1‑289 (MQ=255)
                                                                                                                     ccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcgg                                                                                                                                                          <  1:1392099/289‑1 (MQ=255)
                                                                                                                      cGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGtcgaggc                                                                                                                                                                                                          >  1:16003/1‑234 (MQ=255)
                                                                                                                        tCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCATGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACTCCCGCGTAATGGCGGTAAACG‑AATCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGCGTTTTTCACCAGGTTCATCATCTCTGCGGTCATCGGCTGGAc                                                                                                                                                       >  1:827133/1‑289 (MQ=255)
                                                                                                                         cGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACg                                                                                                                                                      >  1:907176/1‑289 (MQ=255)
                                                                                                                                 tatGGCAGGGAAGGGACAATGGAACTCCACTCAAACTCGTACATTCTTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGAATGATAAAAGCGTTAATCAACACATACGACAGCGTAATGGCGGTAAACG‑ACTCCCAGGCAGGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcg                                                                                                                                                <  2:659026/287‑1 (MQ=255)
                                                                                                                                 gatGGAAGGCAAGGGAAAAGGGAACCCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCGGCGCCCTAACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg                                                                                                                                              <  2:1210821/288‑1 (MQ=255)
                                                                                                                                   tGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            <  2:907176/289‑1 (MQ=255)
                                                                                                                                    ggCAGGGATGTAGCAAAGGAACTCCAGTCAAACTCTTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGCACTTTACGTTCAACACGCTTCATCACCAGCATGATAAAAGCGTTAATAAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGAAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            <  2:1285866/288‑1 (MQ=255)
                                                                                                                                      cAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                      <  2:2068371/196‑1 (MQ=255)
                                                                                                                                      cAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                      >  1:2068371/1‑196 (MQ=255)
                                                                                                                                          gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCCTATCCACCAGACCGATAGTCGAGGCGATGGCCGAGGTTTTCACCCGGTTCATCATCCCTGAGGTCATCGGCGGGACAGTAACCCGATAAGAAtt                                                                                                                                     >  1:1508139/1‑289 (MQ=255)
                                                                                                                                           aagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccac                                                                                                                                                                                                                            <  1:2038855/201‑1 (MQ=255)
                                                                                                                                           aagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg                                                                                                                                                                                                   >  1:110401/1‑226 (MQ=255)
                                                                                                                                           aagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg                                                                                                                                                                                                   <  2:110401/226‑1 (MQ=255)
                                                                                                                                                aCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAAACGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGCGGCGATGGCGGAGTTTTACACCAGGTTCATCATCCTCGAGGTCAACGGCGGGACGCTAAcccggacacaacatggac                                                                                                                                >  2:2105161/1‑274 (MQ=255)
                                                                                                                                                    tGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGCCCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGCTCATCATCTCTGAGGTCATCGGCGGGACGATAACCCGATAAGCATTAAGCAGCAGt                                                                                                                           >  1:3011218/1‑289 (MQ=255)
                                                                                                                                                     ggAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCCCGTAGGTCATCGGCGGGACGACAACCCGATACGCAATAGGCAGCAGTa                                                                                                                          >  2:1132787/1‑289 (MQ=255)
                                                                                                                                                       aaCTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTAc                                                                                                                         <  2:261161/288‑1 (MQ=255)
                                                                                                                                                         cTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCa                                                                                                                                       <  1:2515225/272‑1 (MQ=255)
                                                                                                                                                         cTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCa                                                                                                                                       >  2:2515225/1‑272 (MQ=255)
                                                                                                                                                         cTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTa                                                                                                                      >  1:1909199/1‑289 (MQ=255)
                                                                                                                                                         cTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGAAAACGCGCTAAGCATAAGGCACCAGTACGTa                                                                                                                      >  2:2423221/1‑289 (MQ=255)
                                                                                                                                                              gTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGctg                                                                                                                                                                                                                                                                    >  2:578759/1‑140 (MQ=255)
                                                                                                                                                              gTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgcc                                                                                                                                                                                                                                       <  2:300948/171‑1 (MQ=255)
                                                                                                                                                              gTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc                                                                                                                                                                              <  1:1768764/228‑1 (MQ=255)
                                                                                                                                                                cAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATaa                                                                                                               <  1:258040/289‑1 (MQ=255)
                                                                                                                                                                         atattattGGCCCCCCACGTGGCAGGGCAGGCGAACTTTACGTTAAACCAGGGTCATAACCAGCAGAAAAAACGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑CCTCCCAGGCATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGt                                                                                                      <  2:305896/287‑1 (MQ=255)
                                                                                                                                                                                 tGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATGAGCATTAGGCAGCAGTACGTATCGATAATCCTGCGGTAGCGCCAg                                                                                              >  1:1074300/1‑289 (MQ=255)
                                                                                                                                                                                 tGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAg                                                                                              >  1:487405/1‑289 (MQ=255)
                                                                                                                                                                                  gCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGACAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAgg                                                                                             >  2:890816/1‑289 (MQ=255)
                                                                                                                                                                                     ccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGccc                                                                                          <  1:2237868/289‑1 (MQ=255)
                                                                                                                                                                                         aTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGa                                                                                                                                                                                                                    >  1:1633185/1‑163 (MQ=255)
                                                                                                                                                                                              gCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAgc                                                                                 >  1:1440447/1‑289 (MQ=255)
                                                                                                                                                                                                  ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGcgcg                                                                              >  1:2834303/1‑288 (MQ=255)
                                                                                                                                                                                                    caggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGACAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGc                                                                            <  1:890816/288‑1 (MQ=255)
                                                                                                                                                                                                     aggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCa                                                                           <  1:531263/288‑1 (MQ=255)
                                                                                                                                                                                                       gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               >  2:3099612/1‑186 (MQ=255)
                                                                                                                                                                                                       gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:3099612/186‑1 (MQ=255)
                                                                                                                                                                                                       gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCa                                                                                                                                       <  1:724607/226‑1 (MQ=255)
                                                                                                                                                                                                        cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                  <  2:330497/134‑1 (MQ=255)
                                                                                                                                                                                                        cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                  >  1:330497/1‑134 (MQ=255)
                                                                                                                                                                                                        cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGGTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAAGCGATAAGCATTAGGCAGCAGTACGTATCGCAAAGCCTTCGGGAGCCGCAGGCCCATAGCCAGCCCGGccattt                                                                       >  2:534882/1‑284 (MQ=255)
                                                                                                                                                                                                               tACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTAACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCg                                                                                                        >  1:1859107/1‑249 (MQ=255)
                                                                                                                                                                                                                 cGTTCAACACGCGTCATCACCATACTGATAAAAGCGTTAATCAACACATACGCCGACGTAATGGCGGTAAACG‑ACTCCAAGGAATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTc                                                              <  1:640128/289‑1 (MQ=255)
                                                                                                                                                                                                                      aaccaccgccacacccAGCATAGTAAAAGCGTTAACCAAAACCAACCCCCGCGTAGGGGCGGAAACCG‑GCTCCCAGGAATGGGCGAGGTAATCAGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGAGAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGc                                                         <  2:1404544/275‑1 (MQ=255)
                                                                                                                                                                                                                      aaCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCTATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGc                                                         >  1:377902/1‑289 (MQ=255)
                                                                                                                                                                                                                      aaCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCgg                                                          >  1:303247/1‑288 (MQ=255)
                                                                                                                                                                                                                       aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCa                                                        >  1:1357810/1‑289 (MQ=255)
                                                                                                                                                                                                                            ggTCAACAACAACATGATAAACGAGTTAATACACACAGCCGCGGGCGTAGTGGCGGTAAACG‑ACTCCCGGGCAGGGGCTGAGTAAGCGGGGATTTAACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGGGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAgcga                                                    <  2:1696632/287‑4 (MQ=255)
                                                                                                                                                                                                                                atcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCAGTAGCGTCAAGCCCATCCCCCGCGCCGCATTTTTTTGCCCCcgctggcgcgcccgaa                                               >  2:1814293/1‑276 (MQ=255)
                                                                                                                                                                                                                                  caCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTAACTATCGATAAGCCCGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCCTTTTTTTGCCCCCGCGGccgccactgcaa                                              >  2:1491448/1‑277 (MQ=255)
                                                                                                                                                                                                                                   acacgCAGGAAAAAAGGGTTAATCAACAATGCCGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATcg                                            <  2:2483630/285‑1 (MQ=255)
                                                                                                                                                                                                                                   aCCAGCATAATAAAACCGTTAATCAACCCATACGCCAGCGTAAGGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATcg                                            <  1:1027729/289‑1 (MQ=255)
                                                                                                                                                                                                                                     cAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATcgcg                                          <  1:2423221/289‑1 (MQ=255)
                                                                                                                                                                                                                                          tGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCg                                                                                                                                                                                                                     >  1:2617340/1‑113 (MQ=255)
                                                                                                                                                                                                                                            aTAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGt                                    >  1:1732581/1‑288 (MQ=255)
                                                                                                                                                                                                                                                  gCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGt                              >  1:1055109/1‑288 (MQ=255)
                                                                                                                                                                                                                                                   cGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               >  1:2007284/1‑142 (MQ=255)
                                                                                                                                                                                                                                                   cGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATaa                                                                                                                                                  <  2:1345113/171‑1 (MQ=255)
                                                                                                                                                                                                                                                     ttAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:1342963/140‑1 (MQ=255)
                                                                                                                                                                                                                                                     ttAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGt                                                                                                                           >  2:2084002/1‑192 (MQ=255)
                                                                                                                                                                                                                                                      tAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCCCGCGGCAGCGACTTAATCGCGGCGCGTACCTGTTCGCa                         >  1:1517426/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             cacaTACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCCTTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAacaccg                  >  1:1891546/1‑287 (MQ=255)
                                                                                                                                                                                                                                                              acaTACGCCGGGGCAATGGC‑GTAAACCGCCCCCCAGGAATGGGCTGAGTAATCGAGCAATTTACCCGCCTGGGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACggg                 <  2:1049235/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                aTACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATAGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGGTCGCAAACACCggcg               >  1:294870/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  aCGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGTGTTTTTCCCCAGGTGCATCATCTCTGAGGTCACCGGCGGGCCGATAACGCGCTCAGCATTAGGCAGCAGGACGTATAGACAAGCCCGCCGTAGCATCAGGCCCATCCCCAGCGCGGCCCTTTTTTGCCCTCGCGTCAGCCAATGACTCGCGGCGCGGACCTGCACTCAAACACgggggca             >  2:2010166/1‑285 (MQ=255)
                                                                                                                                                                                                                                                                        gCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            >  2:2632319/1‑156 (MQ=255)
                                                                                                                                                                                                                                                                        gCGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCCAACCAGGGCGGCGGTaa        >  1:2104910/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                         cGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCTATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCCTTTTTTTGCCCCCGCGGCCGCGACTGAATTGCGGCGCGTTCCTGCTTGCCAACACGGGcggggggacac      >  2:194471/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                         cGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgca                                                                                                                                <  2:379703/167‑1 (MQ=255)
                                                                                                                                                                                                                                                                         cGTAATGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaca      >  1:2689533/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                              tGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            >  2:833694/1‑150 (MQ=255)
                                                                                                                                                                                                                                                                              tGGCGGTAAACG‑ACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGcc  >  1:2486185/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                        ||||                                                                                                                                                                                                                                                                                   
GCTTTGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAAGC‑TCTCCCAGGCATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCC  >  CP042583/559374‑559931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A