Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 559,654 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583559,6540GC99.0% 724.5 / NA 312intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  major base C (152/154);  minor base A (3/0);  total (156/156)
Fisher's exact test for biased strand distribution p-value = 2.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6550CG99.7% 729.0 / NA 312intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (155/156);  total (156/156)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6560TA98.1% 723.5 / NA 312intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (155/149);  minor base C (1/5);  total (156/156)
Fisher's exact test for biased strand distribution p-value = 1.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 312 total aligned reads displayed.

TTGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAAGCTCTCCCAGGCATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCC  >  CP042583/559377‑559931
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                   
ttGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGc                                                                                                                                                                                                                                                                            <  2:182110/289‑1 (MQ=255)
 tGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGGAAACGACTCCCAGGCa                                                                                                                                                                                                                                                                           >  1:2650456/1‑289 (MQ=255)
  ggCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACCCCAGCGGAATGGCGGTAAAAGACTCCCAGGAAt                                                                                                                                                                                                                                                                          >  1:170960/1‑289 (MQ=255)
     aaaCCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATggg                                                                                                                                                                                                                                                                       <  2:1172801/289‑1 (MQ=255)
       aCCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTTCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGAGGTAAACGACTCCCAg                                                                                                                                                                                                                                                                              >  1:1800409/1‑280 (MQ=255)
           cgccacgGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGctgagt                                                                                                                                                                                                                                                                 >  1:3021206/1‑284 (MQ=255)
           cgccacgGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGctgagt                                                                                                                                                                                                                                                                 >  1:1530078/1‑284 (MQ=255)
                     gcAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCa                                                                                                                                                                                                                                                        <  2:2442507/288‑1 (MQ=255)
                     gcAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCa                                                                                                                                                                                                                                                        <  1:3044641/288‑1 (MQ=255)
                     gcAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACGTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCa                                                                                                                                                                                                                                                        <  2:779523/288‑1 (MQ=255)
                              gATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCg                                                                                                                                                                                                                                                            >  1:1773803/1‑275 (MQ=255)
                                   ccgaacccccGCAAGCAACGTCCCCCAAAAAAT‑CCAGACACCTACCGCCGTGAGGGGGATTTTCAGGGTGATCACCAGCCCGTCGGGCAG‑ATATGGCAGGGAAGGGACAATGAAACTCCAGTCAAACTCGTACATTATTGGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAAGCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcg                                                                                                                                                                                                                                         <  2:2650456/281‑1 (MQ=255)
                                   aCGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTgc                                                                                                                                                                                                                                          >  2:648300/1‑288 (MQ=255)
                                    gccacacccGCCAGACTCGAGCCCAACAAAATACCAAGCA‑CTACCGCCGTGACGGTGATTTTACGGGGGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcgc                                                                                                                                                                                                                                        <  2:2476901/282‑1 (MQ=255)
                                        tCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAg                                                                                                                                                                                                                                                          >  1:936155/1‑267 (MQ=255)
                                        tCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAg                                                                                                                                                                                                                                                          <  2:936155/267‑1 (MQ=255)
                                        tCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCgccgcc                                                                                                                                                                                                                                    <  2:2182662/289‑1 (MQ=255)
                                        tCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCgccgcc                                                                                                                                                                                                                                    >  1:2235025/1‑289 (MQ=255)
                                          accgcaagatccGTGCCACACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTCTCAGAGATATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAAGGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                  <  2:1495911/278‑1 (MQ=255)
                                           ccGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCata                                                                                                                                                                                                                                 <  1:954176/289‑1 (MQ=255)
                                                accagtgTGCCCAACAAAAACCCAGTCG‑CTCCCGCCGGGACGGGGATTTTCAGGGGGATCACCAGCCCGTCGAGCAG‑ATAGGGCAGGGAAGGGACAATGTAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccac                                                                                                                                                                                                                            <  2:2635640/283‑1 (MQ=255)
                                                       tGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCCGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAATGACCCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCGGCGCCGCACTATCCACCAGCCCg                                                                                                                                                                                                                     >  2:2901433/1‑289 (MQ=255)
                                                        gCCCCAAAAAATACCAATCA‑CTACCGCCGTGACGTTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCg                                                                                                                                                                                                                     <  1:1350841/288‑1 (MQ=255)
                                                                    aCCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGtcgcggcga                                                                                                                                                                                                        >  1:2454848/1‑281 (MQ=255)
                                                                       aaTCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATg                                                                                                                                                                                                      >  1:2873080/1‑288 (MQ=255)
                                                                        aTCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGctg                                                                                                                                                                                                                                                                    <  2:2368778/225‑3 (MQ=255)
                                                                         tCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg                                                                                                                                                                                                   >  2:872188/1‑289 (MQ=255)
                                                                          cA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCgg                                                                                                                                                                                                  <  1:872188/289‑1 (MQ=255)
                                                                              tACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCCACAGCATGATAAAAGCGTTAATCAAAACATACGCCAGCGTAATGGCGGTAAAAGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTAACCGCCTGCGCCGCCATACCCACCCAAACCATATTCCAGGCGGTAGCGGAGt                                                                                                                                                                                               >  2:3211786/1‑289 (MQ=255)
                                                                              tACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCa                                                                                                                                                                                                                                                        <  2:809740/232‑1 (MQ=255)
                                                                              tACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCCCCGCCATCTCCACCAGACCGAAAGTCCAGGCGCGGGCGGGGt                                                                                                                                                                                               >  2:2942859/1‑289 (MQ=255)
                                                                                 cgccgTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGtttt                                                                                                                                                                                            >  1:2180611/1‑289 (MQ=255)
                                                                                   ccgTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTc                                                                                                                                                                                          >  1:1015129/1‑289 (MQ=255)
                                                                                        aCGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAg                                                                                                                                                                                     >  1:828518/1‑289 (MQ=255)
                                                                                           gTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGt                                                                                                                                                                                   >  1:1398822/1‑288 (MQ=255)
                                                                                               ttttCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:1206575/288‑1 (MQ=255)
                                                                                               ttttCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:1979596/288‑1 (MQ=255)
                                                                                               ttttAAGGGTGTTCACAAGCCCGT‑GAGGAGAATATGGCAGGGAAGGGACAATGGAACTCAAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc                                                                                                                                                                              <  2:2845045/289‑1 (MQ=255)
                                                                                                                tgCCCGTCACGCAG‑ATATGGAAGGGAGAGGACAATAGAAACCCCGTCAAACACGTACATTATTTGCCCCCCATGTTGCCAGGAAGGCGAACTTTACGTTCAACCAGCGTACTCACCAGGATGATAAAAGCGTTAAGCAACACATACGCCAGCGTAATGGCGGTAACCGACTCCCAGGCATGGGCTGAGTAATCGTGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg                                                                                                                                                             <  2:2235025/288‑1 (MQ=255)
                                                                                                                  cccGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGAT‑AAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcgg                                                                                                                                                          >  1:2387410/1‑289 (MQ=255)
                                                                                                                   tcgtgaagacg‑ATATGGCAGGGAAGGGACAATGAAACCCCAATAAAACTCGTACATTATTTGCCCACCATGTTGCCAGGCAGCGGAACTTTCCTTTCAACCGGAGTCATCACCAGAATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACCCCCAGGCATGGGCTGGGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcgg                                                                                                                                                          <  2:1337365/279‑1 (MQ=255)
                                                                                                                     gTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGa                                                                                                                                                        <  1:57072/289‑1 (MQ=255)
                                                                                                                      tCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCATCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATTGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCCGCGCCGCCATATCCATCAGACCGATAGTCGAAGCGCGGGCGGAGGTTTTCACCAGGTTCATCATTTCTGAGGTCATCGTCGGGAc                                                                                                                                                       >  1:2010083/1‑289 (MQ=255)
                                                                                                                      tCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAGTTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                  >  1:2727891/1‑214 (MQ=255)
                                                                                                                      tCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcg                                                                                                                                                                                                                                         <  2:3316149/207‑1 (MQ=255)
                                                                                                                      tCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               >  1:1385147/1‑265 (MQ=255)
                                                                                                                      tCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  2:1385147/265‑1 (MQ=255)
                                                                                                                      tCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCCGCCCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCACCACATCTGAGGTCATCgggggggc                                                                                                                                                       >  2:57072/1‑287 (MQ=255)
                                                                                                                            aG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGTTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATa                                                                                                                                                   <  1:2942859/287‑1 (MQ=255)
                                                                                                                            aG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCAAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATaa                                                                                                                                                  <  1:2362494/288‑1 (MQ=255)
                                                                                                                                   ggCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcg                                                                                                                                                                                                                                         >  2:260042/1‑195 (MQ=255)
                                                                                                                                   ggCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcg                                                                                                                                                                                                                                         <  1:260042/195‑1 (MQ=255)
                                                                                                                                    gCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGc                                                                                                                                                                                                                                                                            >  2:829299/1‑159 (MQ=255)
                                                                                                                                    gCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATa                                                                                                                                           <  2:3021206/288‑1 (MQ=255)
                                                                                                                                      agggaagggaCAATGGAACTCCAATCAACGTCGTACATTATTTGCCCCCCATGTTCCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAg                                                                                                                                         <  1:2624276/288‑1 (MQ=255)
                                                                                                                                        ggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGt                                                                                                                                                                                                                >  2:1509967/1‑215 (MQ=255)
                                                                                                                                        ggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGGTAACGCGATAAGCAt                                                                                                                                      >  1:1505138/1‑289 (MQ=255)
                                                                                                                                        ggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAt                                                                                                                                      >  1:3324683/1‑289 (MQ=255)
                                                                                                                                         gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAtctctgag                                                                                                                                                                     >  1:2545687/1‑253 (MQ=255)
                                                                                                                                         gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAtt                                                                                                                                     >  1:1931769/1‑289 (MQ=255)
                                                                                                                                           agggaAAATGAAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTa                                                                                                                                    <  1:1610584/288‑1 (MQ=255)
                                                                                                                                              gaCAATGGACCTCCAGTCAACCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAgg                                                                                                                                  <  1:808744/287‑1 (MQ=255)
                                                                                                                                               aCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACCCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcag                                                                                                                               <  1:3107283/289‑1 (MQ=255)
                                                                                                                                                cAATGGAACTCCATTCAACCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcagc                                                                                                                              <  1:2901433/289‑1 (MQ=255)
                                                                                                                                                 aaTGGAAGTCCGGGTAAACTCTTACATTATGTGCCCCCTCTGTTGCCAGGCGGGCTAACTTACCGTTCAACCGCCGTCATCACCGTGATTAGAAAAGCGTTAATAAACCCATGCGCCAGCGTAATGGCGGTAAAGGACTCCCAGGAATGGGCGGAGTAATCGAGCAATTGACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcagca                                                                                                                             <  2:2732674/289‑1 (MQ=255)
                                                                                                                                                   tGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccac                                                                                                                                                                                                                            >  2:1056493/1‑192 (MQ=255)
                                                                                                                                                    ggAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCACGCAGGCGAACTTTACGTTCAACCCGCGTCATCACCAGCATGATAAAACCGTTAATCAACACATACGCCAGCGTAATGGCCGGAAGCGACTTGTAGGCCTCGGCTGAGTAATCTAGAAATTTGCCCGCCTGCGCCGCGATTTCCACTGGACCGATCGGCGAGTCGATGGCTGAGTTTTTCACCCGGCTCTTAATCTCTAAGGTCATCGGCGGGTCGAGAACGCGATATGcctagtgtagacata                                                                                                                          >  2:2324100/1‑275 (MQ=255)
                                                                                                                                                       aCTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatca                                                                                                                                                                             >  1:2305409/1‑235 (MQ=255)
                                                                                                                                                       aCTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAAACAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGGGCAATTTACCCCCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGt                                                                                                                       <  1:1887293/289‑1 (MQ=255)
                                                                                                                                                          ccAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                  >  2:1796958/1‑179 (MQ=255)
                                                                                                                                                                aaaCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGtt                                                                                                                                                                                              >  2:1752825/1‑209 (MQ=255)
                                                                                                                                                                        aCATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGt                                                                                                      <  1:2276336/289‑1 (MQ=255)
                                                                                                                                                                                tGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACTCGATAAGCACTAGGCAGCAGTTCGTATCGATAAGCCCGCGGTAGCGtgtg                                                                                              >  2:1598870/1‑286 (MQ=255)
                                                                                                                                                                                tGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            >  1:661007/1‑243 (MQ=255)
                                                                                                                                                                                 gCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACCCGATAAGCCTTTGGCAGCAGTCCGTATCGAAAAGCcggcggcacctgtaag                                                                                             >  2:2276336/1‑279 (MQ=255)
                                                                                                                                                                                 gCCCCCAAGATTGCCAGGCAGGCTATCTTTACGTCCAACCAGCATCAGCCCCAGCATGATAAAAGCGTTAAACAACAACTACGCCAGCGTAATGGCGTTAAACGACTCCCAGGCATGGTCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAgg                                                                                             <  2:1972762/289‑1 (MQ=255)
                                                                                                                                                                                    ccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               >  1:1748728/1‑204 (MQ=255)
                                                                                                                                                                                      ccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGa                                                                                                                                                                                                                    >  1:455004/1‑165 (MQ=255)
                                                                                                                                                                                      ccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGa                                                                                                                                                                                                                    <  2:455004/165‑1 (MQ=255)
                                                                                                                                                                                                 ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcag                                                                                                                               <  1:2412600/239‑1 (MQ=255)
                                                                                                                                                                                                 ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcag                                                                                                                               >  2:2412600/1‑239 (MQ=255)
                                                                                                                                                                                                      gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGa                                                                                                                                                        >  2:2768913/1‑209 (MQ=255)
                                                                                                                                                                                                      gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGa                                                                                                                                                        <  1:2768913/209‑1 (MQ=255)
                                                                                                                                                                                                                cGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAgg                                                                                                                                  >  2:1547415/1‑221 (MQ=255)
                                                                                                                                                                                                                cGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAgg                                                                                                                                  <  1:1547415/221‑1 (MQ=255)
                                                                                                                                                                                                                    cAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            >  2:1465075/1‑207 (MQ=255)
                                                                                                                                                                                                                      aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCCTTTTTTTACCCTCGCGGCa                                                        >  1:1318531/1‑289 (MQ=255)
                                                                                                                                                                                                                               atcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               >  1:1482193/1‑161 (MQ=255)
                                                                                                                                                                                                                                 caCCAGCATGATCAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGCTAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAAt                                              >  1:1146554/1‑288 (MQ=255)
                                                                                                                                                                                                                                            tAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               >  2:1997761/1‑148 (MQ=255)
                                                                                                                                                                                                                                                 gCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACCCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               >  1:350525/1‑143 (MQ=255)
                                                                                                                                                                                                                                                    ttAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            >  2:686442/1‑175 (MQ=255)
                                                                                                                                                                                                                                                      aaTCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                 <  2:1210963/200‑1 (MQ=255)
                                                                                                                                                                                                                                                            cacaTACGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            <  1:2057312/167‑1 (MQ=255)
                                                                                                                                                                                                                                                                   gCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGAAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAgg                                                                                                                                  <  1:3224059/170‑1 (MQ=255)
                                                                                                                                                                                                                                                                      aGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaa        >  1:638752/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                         ttAATGGCGGTAAAGGACTCCCAGGCAGGGGCTGAGTAATCGAGCAATTTCCCCGCCTGGGCCGCCATAGCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaa       <  2:3031001/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                         gTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACa     >  1:768189/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          tAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTa                                                                                                                                    <  1:498563/161‑1 (MQ=255)
                                                                                                                                                                                                                                                                             tGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGGAAAcctgt  >  1:3281072/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                   
TTGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCA‑CTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAG‑ATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAAGCTCTCCCAGGCATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCC  >  CP042583/559377‑559931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A