Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I2 R1
|
777 |
59.2 |
2955938 |
92.5% |
2734242 |
106.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,153,047 |
A→G |
D370G (GAT→GGT) |
fabF → |
3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,153,047 | 0 | A | G | 100.0%
| 225.7
/ NA
| 64 | D370G (GAT→GGT) | fabF | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (35/29); total (35/29) |
CAAGCCGTGTGTTGGTAAGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGATAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTAATGGTTCTTTGATCTTTAAAAAG > NC_000913/1152918‑1153174
|
cAAGCCGTGTGTTGGTAAGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGa > 2:1105963/1‑139 (MQ=255)
ttGGTAAGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCg < 2:1273295/139‑1 (MQ=255)
ggTAAGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGAt < 1:150501/139‑1 (MQ=255)
cTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGCAGAATCTTTCTTCCCCCTCCCGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCCACCTGGGACACCCCGAAGGAAGGtgcggttttgat > 1:516798/1‑128 (MQ=255)
aaaTCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTAc < 1:1323273/139‑1 (MQ=255)
aTGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACg > 2:1348696/1‑139 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTCCTCCATCCTGGCGCAGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGcgcg > 1:968613/1‑139 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCCGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGcgcg > 2:792793/1‑139 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTTCGATCTGGATTTCGCACCGCACGAAGcgcg > 2:55341/1‑139 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTAc > 2:765417/1‑126 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTAc < 1:765417/126‑1 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAg < 2:1063815/135‑1 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGcgcg > 2:1209093/1‑139 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGcgcg > 2:772592/1‑139 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGcgcg > 2:443459/1‑139 (MQ=255)
gTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCCCCAACCATCCACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAg > 1:1063815/1‑135 (MQ=255)
ttAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTa > 2:555062/1‑139 (MQ=255)
ggTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCg < 2:516798/139‑1 (MQ=255)
cggcggGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCggaat < 1:443459/139‑1 (MQ=255)
cggcggGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCggaat < 1:555062/139‑1 (MQ=255)
cggcggGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCggaat > 2:722547/1‑139 (MQ=255)
cggcggGTGCAATAGGATCCATCTACTCCCTCCTGGCGCTGCGCGAACAGGCTGTTCCGCCAACCAACAACCT‑GGGTCACCCGGATGAAGGTTGCGGTCTGGGTTTTGTACCGCACGAAGCGCGTCATGTTAACggaat > 1:600340/1‑139 (MQ=255)
gCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAAc < 1:893684/72‑1 (MQ=255)
gCAGTAGAATCTATATACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAAc > 2:893684/1‑72 (MQ=255)
cAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATacac < 1:1209093/139‑1 (MQ=255)
aGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACAct < 1:722547/139‑1 (MQ=255)
gAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCtgt < 1:772592/139‑1 (MQ=255)
tctatctaCTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGt < 1:1163528/108‑1 (MQ=255)
tctatctaCTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGt > 2:1163528/1‑108 (MQ=255)
tctatctaCTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCg > 2:920146/1‑118 (MQ=255)
tctatctaCTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCg < 1:920146/118‑1 (MQ=255)
tctatctaCTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTa > 1:584684/1‑139 (MQ=255)
tatctaCTCCATCCGGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCTTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAAc > 2:729783/1‑139 (MQ=255)
tctaCTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTc > 2:514224/1‑139 (MQ=255)
cTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATaca < 2:424870/122‑1 (MQ=255)
cTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATaca > 1:424870/1‑122 (MQ=255)
cTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATac < 1:225946/121‑1 (MQ=255)
cTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATac > 2:225946/1‑121 (MQ=255)
cTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCcttc > 1:1065764/1‑139 (MQ=255)
cTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCcttc > 1:1265338/1‑139 (MQ=255)
tCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACAct < 2:1182117/123‑1 (MQ=255)
tCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACAct > 1:1182117/1‑123 (MQ=255)
cATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCcttcggc < 2:1065764/139‑1 (MQ=255)
ccTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCcttcggcttc > 2:553176/1‑139 (MQ=255)
cTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCcttcggcttcg < 1:514224/139‑1 (MQ=255)
ggCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGt < 1:729783/139‑1 (MQ=255)
gcgcTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAAcc < 1:566562/46‑1 (MQ=255)
gcgcTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAAcc > 2:566562/1‑46 (MQ=255)
gcgcTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTTCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCggaat < 1:1126841/104‑1 (MQ=255)
gcgcTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCggaat > 2:1126841/1‑104 (MQ=255)
gcgcTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCgga < 1:921847/102‑1 (MQ=255)
gcgcTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCgga > 2:921847/1‑102 (MQ=255)
cgcgATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCcttcggc > 2:156536/1‑126 (MQ=255)
cgcgATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCcttcggc < 1:156536/126‑1 (MQ=255)
cgcgATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTa > 1:583369/1‑139 (MQ=255)
gATCAGGCTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTAATg < 2:1265338/139‑1 (MQ=255)
cTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCggaatgga > 1:392122/1‑91 (MQ=255)
cTGTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCggaatgga < 2:392122/91‑1 (MQ=255)
gTTCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTAATGGTTCTTTGa < 1:553176/139‑1 (MQ=255)
ttCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGtt < 2:696459/39‑1 (MQ=255)
ttCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGtt > 1:696459/1‑39 (MQ=255)
ttCCGCCAACCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTAATGGTTCTTTGAt > 2:1342480/1‑139 (MQ=255)
aaCCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTAATGGTTCTTTGATCTTTaaa < 1:1348696/139‑1 (MQ=255)
aCCATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTAATGGTTCTTTGATCTTTaaaa > 2:780582/1‑139 (MQ=255)
cATCAACCT‑GGGTAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTAATGGTTCTTTGATCTTTAAAAAg > 1:123393/1‑139 (MQ=255)
|
CAAGCCGTGTGTTGGTAAGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCATCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCT‑GGATAACCCGGATGAAGGTTGCGATCTGGATTTCGTACCGCACGAAGCGCGTCAGGTTAGCGGAATGGAATACACTCTGTGTAACTCCTTCGGCTTCGGTGGCACTAATGGTTCTTTGATCTTTAAAAAG > NC_000913/1152918‑1153174
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A