Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I2 R1	766	64.2	3232166	90.9%	2938038	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,291,973	T→C	G146G (GGA→GGG)	ccmH ←	heme lyase, CcmH subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,291,973	0	T	C	100.0%	265.2 / NA	73	G146G (GGA→GGG)	ccmH	heme lyase, CcmH subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/36); total (37/36)

CGCCCTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATATCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAGCAGCACG  >  NC_000913/2291838‑2292108

cgcCCTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCg                                                                                                                                        >  1:993077/1‑139 (MQ=255)

 gcCCTGTCCAGCAAGGCAGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATTATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCgg                                                                                                                                       <  2:993042/139‑1 (MQ=255)

  cccTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGc                                                                                                                                      >  2:43321/1‑139 (MQ=255)

  cccTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGc                                                                                                                                      <  1:650960/139‑1 (MQ=255)

       tCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCt                                                                                                                                 >  2:835344/1‑139 (MQ=255)

                 ccGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCgg                                                                                                                       >  2:798381/1‑139 (MQ=255)

                    gAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑c                                                                                                                  >  1:1047613/1‑139 (MQ=255)

                       ccTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCt                                                                                                               <  2:1616046/139‑1 (MQ=255)

                                 ggCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGTTAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGa                                                                                                     <  1:224203/139‑1 (MQ=255)

                                     tgctgcCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGc                                                                                                                      >  1:417074/1‑120 (MQ=255)

                                     tgctgcCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGc                                                                                                                      <  2:417074/120‑1 (MQ=255)

                                               ttttCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGcac                                                                                       <  1:43321/139‑1 (MQ=255)

                                               ttttCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGcac                                                                                       <  1:798381/139‑1 (MQ=255)

                                               ttttCACCTGCCGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGcac                                                                                       <  2:1047613/139‑1 (MQ=255)

                                                    aCCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCtt                                                                                                                           <  1:1531183/100‑1 (MQ=255)

                                                    aCCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCtt                                                                                                                           >  2:1531183/1‑100 (MQ=255)

                                                     ccTGCTGATAACTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCAcgcg                                                                                 <  2:1051446/139‑1 (MQ=255)

                                                         ctgATAATTGTCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAcc                                                                             >  1:88738/1‑139 (MQ=255)

                                                         ctgATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAcc                                                                             >  2:882540/1‑139 (MQ=255)

                                                          tgATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAccc                                                                            <  2:993077/139‑1 (MQ=255)

                                                          tgATAATTCCCTGTCTGCTAGTCGCTGACACCAGCCACAGTTGACGTCACCACAGTACCCGGCAGAAAAACAAGATACACGGCACGCTTACCTGCCGGCA‑‑TGCTTTGATCAGGAAACGCTTCCCGCCCCGCGGGTAccc                                                                            >  1:833123/1‑139 (MQ=255)

                                                             tAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGAc                                                                         >  2:1279459/1‑139 (MQ=255)

                                                                   ccAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCcgcg                                                                   >  1:710741/1‑139 (MQ=255)

                                                                   ccAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCcgcg                                                                   >  1:294648/1‑139 (MQ=255)

                                                                     aGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 <  2:88738/139‑1 (MQ=255)

                                                                     aGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 <  1:1404607/139‑1 (MQ=255)

                                                                     aGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 <  1:882540/139‑1 (MQ=255)

                                                                       tCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCg                                                               >  1:183986/1‑139 (MQ=255)

                                                                        cTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTAcc                                                                                                                             >  2:710565/1‑78 (MQ=255)

                                                                        cTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTAcc                                                                                                                             <  1:710565/78‑1 (MQ=255)

                                                                         tGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCggg                                                             <  2:183986/139‑1 (MQ=255)

                                                                         tGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCggg                                                             <  2:294648/139‑1 (MQ=255)

                                                                           gtagtaGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCg                                                           >  1:1411795/1‑139 (MQ=255)

                                                                             agtagCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGta                                                         <  1:1506876/139‑1 (MQ=255)

                                                                                 gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCACGCGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGtata                                                       >  1:1105956/1‑139 (MQ=255)

                                                                                 gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGt                                                                                >  2:376115/1‑112 (MQ=255)

                                                                                 gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGt                                                                                <  1:376115/112‑1 (MQ=255)

                                                                                 gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 >  1:1244228/1‑127 (MQ=255)

                                                                                 gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 <  2:1244228/127‑1 (MQ=255)

                                                                                 gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 <  1:897298/127‑1 (MQ=255)

                                                                                 gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 >  2:897298/1‑127 (MQ=255)

                                                                                   tGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGAc                                                   >  1:153175/1‑139 (MQ=255)

                                                                                   tGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGAc                                                   >  1:663784/1‑139 (MQ=255)

                                                                                     aCGCCAGCCACAATTGACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGAccc                                                 >  2:1521104/1‑139 (MQ=255)

                                                                                      cGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAc                                                                              >  1:421613/1‑109 (MQ=255)

                                                                                      cGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAc                                                                              <  2:421613/109‑1 (MQ=255)

                                                                                         cagccaCAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGca                                                                                        <  2:1422297/96‑1 (MQ=255)

                                                                                         cagccaCAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGca                                                                                        >  1:1422297/1‑96 (MQ=255)

                                                                                            ccaCAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCgcc                                          <  1:1595980/139‑1 (MQ=255)

                                                                                            ccaCAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCgcc                                          >  2:42434/1‑139 (MQ=255)

                                                                                                   tAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCCACGCCGCGAGCGGGCGTATATGACCCAACCgccaatgcca                                   <  2:980961/139‑1 (MQ=255)

                                                                                                          accacAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAAc                                                                                                  <  2:1497503/69‑1 (MQ=255)

                                                                                                          accacAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAAc                                                                                                  >  1:1497503/1‑69 (MQ=255)

                                                                                                            cacaATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGc                                                                                                                      <  2:880593/49‑1 (MQ=255)

                                                                                                            cacaATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGc                                                                                                                      >  1:880593/1‑49 (MQ=255)

                                                                                                            cacaATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCact                          >  2:1379965/1‑139 (MQ=255)

                                                                                                                aTACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTg                      <  2:651463/139‑1 (MQ=255)

                                                                                                                 tACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCgg                                                              >  2:1145265/1‑98 (MQ=255)

                                                                                                                 tACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCgg                                                              <  1:1145265/98‑1 (MQ=255)

                                                                                                                   cccGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 >  1:521209/1‑93 (MQ=255)

                                                                                                                   cccGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg                                                                 <  2:521209/93‑1 (MQ=255)

                                                                                                                      ggCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGca                                                                                        <  2:267181/67‑1 (MQ=255)

                                                                                                                      ggCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGca                                                                                        >  1:267181/1‑67 (MQ=255)

                                                                                                                      ggCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCactact                       <  1:1163046/132‑1 (MQ=255)

                                                                                                                      ggCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCactact                       >  2:1163046/1‑132 (MQ=255)

                                                                                                                           aaaaaCAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCcac           >  1:966896/3‑139 (MQ=255)

                                                                                                                           aTAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCcac           >  2:285584/1‑139 (MQ=255)

                                                                                                                            tAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCcaca          <  2:966896/139‑1 (MQ=255)

                                                                                                                             aaaCAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTg                                                                                                            <  2:615579/40‑1 (MQ=39)

                                                                                                                             aaaCAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTg                                                                                                            >  1:615579/1‑40 (MQ=255)

                                                                                                                               acaacaTACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCAcagca       >  2:636610/1‑139 (MQ=255)

                                                                                                                                  acaTACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAgcagca    <  2:663784/139‑1 (MQ=255)

                                                                                                                                  acaTACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAgcagca    <  2:153175/139‑1 (MQ=255)

                                                                                                                                    atacCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAGCAGCACg  <  1:835344/139‑1 (MQ=255)

CGCCCTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATATCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAGCAGCACG  >  NC_000913/2291838‑2292108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A