Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F1 I1 R1
|
765 |
39.6 |
1867486 |
94.4% |
1762906 |
108.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,600,609 |
(C)5→6 |
coding (132/471 nt) |
bcp → |
peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,600,604 | 1 | . | C | 97.0%
| 110.8
/ ‑3.5
| 33 | coding (127/471 nt) | bcp | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (13/19); total (13/20) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
TGGAGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑C‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAG > NC_000913/2600466‑2600730
|
tGGAGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGa > 2:602651/1‑139 (MQ=255)
tGGAGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGa > 1:349116/1‑139 (MQ=255)
ttAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccc < 2:90938/139‑1 (MQ=255)
ttAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccc > 2:230872/1‑139 (MQ=255)
aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccccgg < 2:851250/139‑4 (MQ=255)
aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccccgg < 1:230872/139‑4 (MQ=255)
aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccccgg < 2:531598/139‑4 (MQ=255)
aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccccgg > 1:830781/1‑136 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTg < 1:500695/137‑1 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTg > 2:500695/1‑137 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTa < 2:139551/139‑1 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTa < 2:830781/139‑1 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTa < 1:921417/139‑1 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTa > 1:7787/1‑139 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTa < 1:602651/139‑1 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTa < 2:7787/139‑1 (MQ=255)
ccACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTa < 1:62154/139‑1 (MQ=255)
aCTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACa < 2:349116/139‑1 (MQ=255)
aCTGAAAGACCGTGAAAACGTACCGAGATTTAGCTTTCCGCATCATGACAGAGATAAAAGTAATTTGATCGACTTCCAGGGACAGCGTCTTCTGGTTTATTTATACCCGAGAGCCATGA‑CTGCCCGGCTGTACCGTAcg < 2:560099/139‑2 (MQ=255)
gAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGc > 2:457806/1‑139 (MQ=255)
gTGATATCGCACCGAAATTTAGCTTGCCGAATCAAGACGGAGAACTAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTgctgct < 2:599433/139‑1 (MQ=255)
aaTTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATgg < 1:457806/139‑1 (MQ=255)
aaTTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccccgg > 1:769471/1‑98 (MQ=255)
aaTTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccccgg < 2:769471/101‑4 (MQ=255)
aCAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgt < 2:258386/139‑1 (MQ=255)
gTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTg > 2:225698/1‑139 (MQ=255)
aaTTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGt > 2:781061/1‑139 (MQ=255)
aTTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTa < 1:715421/139‑1 (MQ=255)
aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGa > 2:313822/1‑74 (MQ=255)
aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGa < 1:313822/74‑1 (MQ=255)
aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGaaa > 1:220502/1‑139 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTa < 1:661196/47‑1 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTa > 2:661196/1‑47 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGaaaaa > 1:859769/1‑139 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccccgg > 1:218029/1‑39 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cccccgg < 2:218029/42‑4 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cc > 2:277233/1‑37 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑c‑cc < 1:277233/37‑1 (MQ=255)
cGTGTTCTGGATTATTTCTACCCGAAAGACATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCCGGGTATCAGAACCGATAAAACCGaaaaa > 2:28026/1‑139 (MQ=255)
gtatATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATgg < 1:579174/68‑1 (MQ=255)
gTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATgg > 2:579174/1‑71 (MQ=255)
gTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGc > 1:462650/1‑112 (MQ=255)
gTTTATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGc < 2:462650/112‑1 (MQ=255)
tttATTTCTACCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGtt < 2:859769/139‑1 (MQ=255)
aCCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg < 1:401641/90‑1 (MQ=255)
aCCCGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg > 2:401641/1‑90 (MQ=255)
cGAAAGCCATGACC‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAag < 2:220502/139‑1 (MQ=255)
|
TGGAGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑C‑CCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAG > NC_000913/2600466‑2600730
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
