Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
87 |
31.3 |
1776092 |
98.2% |
1744122 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,889,110 |
T→C |
K330K (AAA→AAG) |
cysI ← |
sulfite reductase, hemoprotein subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,889,110 | 0 | T | C | 100.0%
| 137.4
/ NA
| 37 | K330K (AAA→AAG) | cysI | sulfite reductase, hemoprotein subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (18/19); total (18/19) |
CAGTTATCATCAATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAATTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGG > NC_000913/2889033‑2889186
|
cAGTTATCATCAATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTg < 2:519889/81‑1 (MQ=255)
aGTTATCATCAATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGa > 1:519931/1‑81 (MQ=255)
aGTTATCATCAATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGa > 1:519926/1‑81 (MQ=255)
gTTATCATCAATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGAt > 2:519941/1‑81 (MQ=255)
tcatcaATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATccc < 2:519891/80‑1 (MQ=255)
tcatcaATGCCCTTAACCCAGCCAATACGATCGACTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATcccc < 1:519890/81‑1 (MQ=255)
tcaATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCcgcg < 1:519892/81‑1 (MQ=255)
caATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCcgcgc > 1:519929/1‑81 (MQ=255)
aaTGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCcgcgc < 1:519893/80‑1 (MQ=255)
aTGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGa > 1:519945/1‑81 (MQ=255)
tGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGAc < 1:519898/81‑1 (MQ=255)
tGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGAc < 2:519896/81‑1 (MQ=255)
tGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGAc < 1:519897/81‑1 (MQ=255)
tGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGAc < 1:519895/81‑1 (MQ=255)
tGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGAc < 2:519894/81‑1 (MQ=255)
ccAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTc < 1:519899/81‑1 (MQ=255)
cAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTcc > 2:519943/1‑81 (MQ=255)
cAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTcc > 1:519935/1‑81 (MQ=255)
gCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGc > 1:519927/1‑81 (MQ=255)
ccAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCt > 1:519940/1‑81 (MQ=255)
aaTACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCTGCGCGACGCTCCACTTCCGCttt < 2:519900/81‑1 (MQ=255)
aaTACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGAT‑CCCGCGCGACGCTCCACTTCCGCttt > 1:519936/1‑80 (MQ=255)
gATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACg > 2:519932/1‑81 (MQ=255)
aTCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGt > 1:519933/1‑81 (MQ=255)
tCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGtc < 2:519901/81‑1 (MQ=255)
gCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGtct > 2:519942/1‑80 (MQ=255)
ccTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGtctc > 2:519947/1‑80 (MQ=255)
gTCCGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAAccc > 2:519934/1‑81 (MQ=255)
cGGTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAAccccc < 2:519902/80‑1 (MQ=255)
ggTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCAc > 1:519944/1‑81 (MQ=255)
ggTGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCAc > 2:519938/1‑81 (MQ=255)
tGAACTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCAcgc > 2:519937/1‑81 (MQ=255)
aaCTCATATGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACgcgc < 2:519903/81‑1 (MQ=255)
atatGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCa < 2:519904/80‑1 (MQ=255)
tatGGACGGATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGc < 1:519905/81‑1 (MQ=255)
gATCGGTTCAAACTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTAttt < 2:519906/81‑1 (MQ=255)
aaaCTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTgg < 2:519907/80‑1 (MQ=255)
|
CAGTTATCATCAATGCCCTTAACCCAGCCAATACGATCGCCTCGTCCGGTGAACTCATATGGACGGATCGGTTCAAATTTGATCCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGG > NC_000913/2889033‑2889186
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
