Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
13 |
33.8 |
2116282 |
98.9% |
2093002 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
3,291,610 |
IS3 (–) +5 bp :: +T |
coding (270‑274/1092 nt) |
yraK → |
putative fimbrial adhesin YraK |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
315229 = | NA (NA) | 41 (1.160)
+T |
31/158 |
0.2 |
100% |
noncoding (1/1255 nt) |
IS3 |
repeat region |
| ? | NC_000913 |
3291610 = |
0 (0.000) | coding (270/1092 nt) |
yraK |
putative fimbrial adhesin YraK |
| * |
? |
NC_000913 |
= 2171428 | NA (NA) | 44 (1.230) |
32/160 |
0.2 |
100% |
noncoding (1258/1258 nt) |
IS3 |
repeat region |
| ? | NC_000913 |
= 3291614 |
0 (0.000) | coding (274/1092 nt) |
yraK |
putative fimbrial adhesin YraK |
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/315307‑315229
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTC > NC_000913/3291610‑3291686
|
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 2:76408/80‑1
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 2:417264/80‑1
ATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:110793/80‑1
ATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:110764/1‑79
ATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 2:210422/1‑79
CTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACT < 1:210393/80‑1
CTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACT < 1:210394/80‑1
GTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGA > 2:647542/1‑81
GTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGA > 1:647555/1‑81
TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGAC < 2:110797/81‑1
TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGA > 2:647547/1‑80
TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAG < 1:110785/81‑1
GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAG > 2:647565/1‑80
GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAG > 2:647584/1‑80
ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTA > 2:647550/1‑80
GACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGACCACTGGACATCAGACAGGATATTACAAACT > 2:647551/1‑80
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCA < 2:417256/81‑1
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTC < 2:210363/80‑1
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTC > 1:647576/1‑80
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTC < 1:110790/80‑1
GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGA > 1:647567/1‑80
GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGAAATCAGACAGGATATTACAAACTCAATGA > 2:647574/1‑80
AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGA > 2:647575/1‑79
TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGC < 1:60968/81‑1
TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCC > 1:647561/1‑81
ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTG > 1:647578/1‑81
ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCT < 2:417275/80‑1
CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGG < 2:110800/81‑1
CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTG < 1:76347/80‑1
ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATA > 2:647562/1‑81
ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGA < 2:110781/79‑1
AGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTA < 1:210361/80‑1
AGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTA > 1:647568/1‑80
GTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCAC < 1:210369/81‑1
GTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCAC < 1:60958/81‑1
TGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACA > 1:647564/1‑81
TCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATT < 1:110789/81‑1
TCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATT < 1:60992/81‑1
TCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATT < 1:210352/81‑1
TATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGG > 1:647579/1‑81
TATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGG > 1:647572/1‑81
TGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCA > 2:647559/1‑80
AAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATT > 1:647577/1‑81
AGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTC < 1:647524/81‑1
ATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTC > 2:647573/1‑79
|
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/315307‑315229
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTC > NC_000913/3291610‑3291686
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
