Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I2 R1
|
12 |
27.9 |
1984062 |
98.2% |
1948348 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
3,291,610 |
IS3 (–) +5 bp :: +T |
coding (270‑274/1092 nt) |
yraK → |
putative fimbrial adhesin YraK |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
315229 = | NA (NA) | 46 (1.400)
+T |
42/158 |
0.0 |
100% |
noncoding (1/1255 nt) |
IS3 |
repeat region |
| ? | NC_000913 |
3291610 = |
0 (0.000) | coding (270/1092 nt) |
yraK |
putative fimbrial adhesin YraK |
| * |
? |
NC_000913 |
= 2171428 | NA (NA) | 43 (1.290) |
37/160 |
0.1 |
100% |
noncoding (1258/1258 nt) |
IS3 |
repeat region |
| ? | NC_000913 |
= 3291614 |
0 (0.000) | coding (274/1092 nt) |
yraK |
putative fimbrial adhesin YraK |
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/315307‑315229
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCA > NC_000913/3291610‑3291688
|
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 2:349953/80‑1
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 2:96208/80‑1
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 2:67675/80‑1
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:67676/80‑1
ATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 2:96164/1‑79
CTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACT < 1:182650/80‑1
TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGAC < 1:96192/81‑1
TTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACAT > 2:555087/1‑81
TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGA > 2:555118/1‑81
ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGAC < 2:96200/80‑1
AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGTATA > 2:555101/1‑81
AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGAT < 1:349943/80‑1
GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATAT < 1:54866/81‑1
TCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATAT > 2:555102/1‑80
ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTAC < 1:54857/81‑1
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCA < 2:349939/81‑1
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTC < 2:96213/80‑1
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAAC < 2:67635/78‑1
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAAC < 2:54862/78‑1
ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAAC < 1:349931/78‑1
GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAAT > 1:555105/1‑80
GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAAT > 2:555117/1‑80
AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGA < 1:96189/81‑1
AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATG < 1:349941/80‑1
GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGAC < 1:349933/81‑1
GAGTCTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGA > 1:555106/1‑80
AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGA > 1:555148/1‑79
ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTG > 2:555122/1‑81
ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCT < 2:182601/80‑1
CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATAT < 2:96186/81‑1
CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATAT > 2:555121/1‑81
TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATAT > 2:555128/1‑80
AGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTA > 2:555116/1‑80
CCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAA < 2:349949/81‑1
CCGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATACTACAAACTCAATGACAGCCTGGATATTAAAA > 2:555112/1‑81
CGCGTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAAC < 1:96199/81‑1
GTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCAC < 2:782526/81‑1
GTGTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCA > 2:555111/1‑80
GTCCACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACAT > 1:555110/1‑81
CACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTA > 2:555104/1‑80
ACTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACA < 2:182613/81‑1
CTATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAG > 1:555167/1‑81
TATTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGG > 2:555107/1‑81
TTGCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGG < 2:54861/79‑1
GCTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAA < 2:349921/80‑1
CTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAAC < 2:54852/81‑1
CTGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAA < 2:96191/80‑1
TGGGTAAGATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAAC > 2:555125/1‑80
ATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCA < 2:555075/81‑1
ATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCA < 1:555076/81‑1
ATCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTC > 1:555129/1‑79
|
GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/315307‑315229
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCA > NC_000913/3291610‑3291688
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
