Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9101112 F55 I0 R1
|
156 |
414.6 |
11700970 |
99.6% |
11654166 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP006881 |
2,235,729 |
C→T |
5.3% |
E26K (GAA→AAA) |
U712_11225 ← |
Transcriptional regulatory protein resD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 2,235,729 | 0 | C | T | 5.3%
| 1318.6
/ 34.6
| 356 | E26K (GAA→AAA) | U712_11225 | Transcriptional regulatory protein resD |
| Reads supporting (aligned to +/- strand): ref base C (167/169); new base T (8/11); total (176/180) |
| Fisher's exact test for biased strand distribution p-value = 6.39e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.21e-02 |
Only 100 of 363 total aligned reads displayed.
ATCAGTCCCCGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTCCGGCAAG > CP006881/2235580‑2235878
|
aTCAGTCCCCGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTc < 2:4754669/150‑1 (MQ=255)
aTCAGTCCCCGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTc < 2:5394414/150‑1 (MQ=255)
aGTCCCCGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGtc < 2:5058057/150‑1 (MQ=255)
ccccGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGtcatc > 2:1198613/1‑150 (MQ=255)
cccGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGtcatca < 1:1098274/150‑1 (MQ=255)
cccGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGtcatca > 1:5240211/1‑150 (MQ=255)
ccGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTTGTCATCaa < 1:5464886/150‑1 (MQ=255)
ggCATNATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAact > 1:5806224/1‑150 (MQ=255)
ggCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAact > 2:1826105/1‑150 (MQ=255)
atcatcAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTTGTCATCAactact < 2:486282/150‑1 (MQ=255)
atcatcAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAactact > 1:4917189/1‑150 (MQ=255)
caGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTTGTCATCAACTACTAatat < 1:4178594/150‑1 (MQ=255)
caGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTTGTCATCAACTACTAatat < 2:124088/150‑1 (MQ=255)
aGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGTGGCGAATTCTGGCTTCGTCATCAACTACTAATAtt < 1:4004143/150‑1 (MQ=255)
aTCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATAtttt > 2:3600281/1‑150 (MQ=255)
tCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATAttttt < 1:4743510/150‑1 (MQ=255)
aGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGtt < 2:4402127/150‑1 (MQ=255)
gCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGttt < 1:3258400/150‑1 (MQ=255)
cAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTttc < 2:404866/150‑1 (MQ=255)
cAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTttc > 1:3008645/1‑150 (MQ=255)
cAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCAGTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTttc < 1:2186583/150‑1 (MQ=255)
aaaaTTAAGTCATAATTGGCTTCAAGGCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTACAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTttcg < 2:2503727/150‑1 (MQ=255)
aaTTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTttcgtt < 2:39280/150‑1 (MQ=255)
aaTTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGATTCGTCATCAACTACTAATATTTTTGTttcgtt < 1:2803030/150‑1 (MQ=255)
aTTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTttcgttc > 2:3495821/1‑150 (MQ=255)
aTTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATAATTTTGTttcgttc > 1:2927735/1‑150 (MQ=255)
aTAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTc > 1:862770/1‑150 (MQ=255)
tAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAANNCGGCGAATTCTGGCTTTGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTcc > 1:828922/1‑150 (MQ=255)
tAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTcc > 1:4454837/1‑150 (MQ=255)
tGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGt > 1:3609577/1‑150 (MQ=255)
tGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAAGTCTGGCTTCGTCATCAACTACTAAAATTTTTGGTTCGTTCGTTTGGACCATGt > 1:1703768/1‑150 (MQ=255)
ggCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGtt > 1:2397568/1‑150 (MQ=255)
cTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGtttt > 2:229618/1‑150 (MQ=255)
cTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGtttt > 1:1489685/1‑150 (MQ=255)
ttCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTc > 2:5009748/1‑150 (MQ=255)
aaGCCCTTTGGCAATGGCTNCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTcccc < 2:5833354/150‑1 (MQ=255)
cAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCtt < 1:4870142/150‑1 (MQ=255)
cAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCtt > 1:3887247/1‑150 (MQ=255)
cAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCtt > 1:4418801/1‑150 (MQ=255)
aaTGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTc < 2:1604076/150‑1 (MQ=255)
aaTGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTATTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTc < 2:4494813/150‑1 (MQ=255)
aTGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCt < 2:4234881/150‑1 (MQ=255)
ggCTTCATCACGATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTACGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTGCCCCTGCTTTCCTTCTGt < 1:3386817/150‑1 (MQ=255)
gCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGtt < 1:1993023/150‑1 (MQ=255)
gCTTCATCACCATTTTCAGCTTCACCTATAGCATATTTTTCTCGTACAAGATACTTTATTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCTTTTGGACCATGTTTTCCCCCTGCTTTCCTTCTGtt < 1:373553/150‑1 (MQ=255)
ttCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTAc < 2:5593851/150‑1 (MQ=255)
tcatcaCCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACt < 2:3245510/150‑1 (MQ=255)
tcaCCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTc > 2:3833285/1‑150 (MQ=255)
aTTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCAtttt < 1:5105182/150‑1 (MQ=255)
aTTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCAtttt < 2:2339802/150‑1 (MQ=255)
ttCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATc < 2:4613760/150‑1 (MQ=255)
cAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCaa < 2:2837646/150‑1 (MQ=255)
ccATCTATAGCATAATTTTCACGTCCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGt < 2:861309/149‑1 (MQ=255)
cATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTg > 1:124110/1‑150 (MQ=255)
aTCTATATCATAATTTTCATGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTTGCTTCCTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTTCATGTTTTCCTCCTCCTCTACTTCTGTTACTTTAATTTTATCAAATCGTga < 1:4335082/150‑1 (MQ=255)
aTCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTTCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTgg > 2:3097732/1‑149 (MQ=255)
aTCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTga > 2:1305033/1‑150 (MQ=255)
aGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGt < 2:4311164/150‑1 (MQ=255)
tgtAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGCATCCTGACTTCGTCATCAGCTACTAATATTTTTGTTTCGTACGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGttt < 2:1018987/148‑1 (MQ=255)
aTAATTTTCACGTTCAAGATACATTCTTAAAAGGCGTCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTg < 1:5580683/150‑1 (MQ=255)
aTAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTg < 2:4562284/150‑1 (MQ=255)
aTAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTg > 1:2553503/1‑150 (MQ=255)
aaTTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTTGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTgag > 2:2103442/1‑150 (MQ=255)
aaTTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTgag > 2:5248838/1‑150 (MQ=255)
aaTTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTgag < 1:1303220/150‑1 (MQ=255)
aTTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTgaga < 1:5412147/150‑1 (MQ=255)
cACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTTGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGGAAGTTTGAGAACtgt > 2:5177241/1‑150 (MQ=255)
cACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACtgt > 2:1637629/1‑150 (MQ=255)
tCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGc < 1:1826105/150‑1 (MQ=255)
tCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGc > 1:1018183/1‑150 (MQ=255)
cAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTATTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCt < 2:1908685/150‑1 (MQ=255)
cAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCt < 2:4127724/150‑1 (MQ=255)
aGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCttt > 2:3279500/1‑150 (MQ=255)
aGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCttt > 2:3043007/1‑150 (MQ=255)
tACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCaa < 1:2618177/150‑1 (MQ=255)
cATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAg > 2:931336/1‑150 (MQ=255)
aTTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAgg > 1:410716/1‑150 (MQ=255)
ttCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGa > 2:763962/1‑150 (MQ=255)
ttCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGa > 2:4446387/1‑150 (MQ=255)
tCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGAc < 2:2725545/150‑1 (MQ=255)
ttAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTa > 1:162142/1‑150 (MQ=255)
tAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTAt > 1:4568288/1‑150 (MQ=255)
tAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTAt < 2:3744666/150‑1 (MQ=255)
tAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTACAAAGGACTAt < 1:3854715/150‑1 (MQ=255)
aaaaGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATg < 2:4418801/150‑1 (MQ=255)
aGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCAt > 1:5688101/1‑150 (MQ=255)
aGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCAt > 1:3164391/1‑150 (MQ=255)
cggcgAATTCTGGCTTTGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAg < 1:3147285/150‑1 (MQ=255)
ggcgAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGa > 2:2195064/1‑150 (MQ=255)
aaTTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGa > 2:2803451/1‑150 (MQ=255)
ttCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAACTCGTGAGAAAGTTTGAGAGCTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAg > 2:1975018/1‑150 (MQ=255)
ttCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAg < 2:1733670/150‑1 (MQ=255)
tGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTcc > 1:4632336/1‑150 (MQ=255)
tGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTcc < 2:3818026/150‑1 (MQ=255)
tGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTcc > 2:2645676/1‑150 (MQ=255)
gCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTCCgg > 1:2751613/1‑150 (MQ=255)
gCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTCCgg > 1:5308234/1‑150 (MQ=255)
ttCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTCCGGCa > 2:3172731/1‑150 (MQ=255)
ttCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTCCGGCa > 1:232217/1‑150 (MQ=255)
ttCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTCCGGCa < 2:2605898/150‑1 (MQ=255)
|
ATCAGTCCCCGGCATCATCAGATCAAGCAAAATTAAGTCATAATTGGCTTCAAGCCCTTTGGCAATGGCTTCATCACCATTTTCAGCTTCATCTATAGCATAATTTTCACGTTCAAGATACATTCTTAAAAGGCGGCGAATTCTGGCTTCGTCATCAACTACTAATATTTTTGTTTCGTTCGTTTGGTCCATGTTTTCCCCCTGCTTTCCTTCTGTTACTTTCATTTTATCAAATCGTGAGAAAGTTTGAGAACTGTGTCGCTTTCAAAGGACTATGCATAAGAATGAAGTCCGGCAAG > CP006881/2235580‑2235878
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
