Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F60 I1 R1	19	89.3	3633172	97.5%	3542342	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	3,890,075	IS5 (–) +4 bp	coding (1346‑1349/1416 nt)	tnaA →	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	162 (1.560)	45/276	0.3	98.7%	noncoding (1/1195 nt)	IS5	repeat region
*	?	NC_000913	3890075 =	2 (0.020)	162 (1.560)	45/276	0.3	98.7%	coding (1346/1416 nt)	tnaA	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
*	?	NC_000913	3652036 =	NA (NA)	420 (4.050)	81/276	0.0	99.5%	noncoding (1195/1195 nt)	IS5	repeat region
*	?	NC_000913	= 3890078	2 (0.020)	420 (4.050)	81/276	0.0	99.5%	coding (1349/1416 nt)	tnaA	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

Only 100 of 162 total aligned reads displayed.

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289975‑2290113

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAA  >  NC_000913/3890075‑3890211

caacTCTCTTTTCTGGTCTGACGGCGCGTACTGCTGAATTCACTGTCGGCGAAGGTTAGTTGATGACTCATGATGAACCCTTTTCTATGGCTCCAGCTGACACACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                          <  1:1084886/136‑1

AAACTCTCTCTTCTGGTCTGACGGCGCTAACTGCTGAATTCACTGTCTGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACATACATGATCTCATTTCAGGGACTTGTTCGCACCTTCCT                                                                                                                                          <  1:282158/140‑1

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                          <  1:282241/140‑1

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAAATCAATGTCGGCGAAGGAAAGTAGATGACTCATGATGAACCCTGTACTATGGCTCCAGATTACAAACATGATAACATAACAGGGACATGATCGCACCATCCT                                                                                                                                          >  2:1661825/1‑140

 AAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                                                                                         >  2:694623/1‑140

 AAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                                                                                         <  2:1621033/140‑1

  caacaCTTTTCTGGTCTGACGGCGCTTACAGCTGAATCCACTGTCGGCGAAGGTAAGTTGCTGACTCAGGATGAACCCTGTTCTATGGCTCCAGATGACAAACATAAACGCATATCAGGGACTTGTTCGCAACTTCCTaa                                                                                                                                        <  2:875581/135‑3

  agTCTCTTTTCTGGTCTGACGGCGCTTAATGCTGAATTCACTGTCGGCGAAGGTAAGTTGTTGACTCATGTTGAACCCTGTTCTATGGATCCAGATGACAATCATGATCTCATATCAGGGACTTGTTCGCACCTTACTTA                                                                                                                                        >  2:679187/3‑140

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:1096347/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:1401484/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:525065/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  1:1557388/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACAGCTGAATACACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACAAGAACTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:387711/140‑1

   ATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  2:318446/140‑1

   ATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  1:120078/140‑1

         TTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATT                                                                                                                                 <  2:1502033/140‑1

               GTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTT                                                                                                                           >  2:363312/1‑140

                    ACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGT                                                                                                                      >  1:1571833/1‑140

                     CGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTA                                                                                                                     <  2:1376625/140‑1

                      GGCGCTTACTGCTGAATTCTCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTAC                                                                                                                    <  2:1050804/140‑1

                      GGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTAC                                                                                                                    <  1:1008426/140‑1

                      GGCGATTACTGCTGAATTCACGGTCGGAGAAGGTAAGTTGATCACTCATGATGAACCATGTTCTATGGCTCCAGAAGAAAAACATGATCTCATATCAGGGACTTGTTCGCACCTTACTTAAAGGATTAACCTTTACGTAC                                                                                                                    <  2:925176/140‑1

                             ACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGA                                                                                                             <  1:1316685/140‑1

                             ACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGA                                                                                                             <  1:430223/140‑1

                                         ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTC                                                                                                 >  2:1561707/1‑140

                                         ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTC                                                                                                 >  1:664801/1‑140

                                             TCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGGTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTACCCTTTACGTACGAACCGAAAGTATTGCGTCACTT                                                                                             <  2:560374/140‑1

                                              CGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTC                                                                                            >  1:1237907/1‑140

                                                GCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTACTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATAGAGTCACTTCAC                                                                                          >  2:792116/1‑140

                                                    AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCA                                                                                      <  1:1125590/140‑1

                                                      GTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGAACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAA                                                                                    <  2:140210/140‑1

                                                                  CTCATGATGTACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGT                                                                        <  2:1568460/140‑1

                                                                     ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTA                                                                     <  2:937844/140‑1

                                                                     ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTA                                                                     <  2:937880/140‑1

                                                                     ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTA                                                                     <  1:1371876/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTATAGAAGTTTAAT                                                                   <  2:1651000/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTTAT                                                                   <  1:1099917/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  1:1372535/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  2:520266/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  1:762084/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  1:1154233/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  1:1717059/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  1:1035898/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACGTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  2:913090/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTAGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  1:588868/140‑1

                                                                         tgcACCCTGTTCTATGGCTCCAGATGACATACAAGATCTCATATCTGGGACTTGTTCGCACCTTCATTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1741810/137‑1

                                                                         aGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTAAAACGATTAACCATTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAACTTTAAATA                                                                 <  2:1086393/139‑1

                                                                         TGATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:213200/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAATCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGATAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1300428/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:63014/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1622135/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1803976/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:214193/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1295328/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:233983/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  1:1621774/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  1:611702/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:645891/140‑1

                                                                         TGAACCCTGTACTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:117999/140‑1

                                                                          GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAA                                                                <  2:1349681/140‑1

                                                                                TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTAC                                                          >  1:1043501/1‑140

                                                                                  TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       >  1:1480681/1‑61

                                                                                   TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTTCGTACGAAACGAAAGTATTGCGTCAATTCACCGC‑AAACTTAAAGAAGTTTAATTAATACTACAGAG                                                      <  2:151033/140‑1

                                                                                   TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGA                                                       <  1:1299955/140‑1

                                                                                   TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGA                                                       <  2:458275/140‑1

                                                                                    CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAG                                                      <  2:1571833/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAGAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     >  2:44236/1‑140

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  2:1182324/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  1:1610422/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  1:854409/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  1:854455/140‑1

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCTGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGACCCGAAAGTATTGCGTCACTTCACCGAAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   <  1:914270/140‑1

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   >  1:988080/1‑140

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAA                                                                             >  1:980672/1‑114

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAA                                                                             <  2:980672/114‑1

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCATCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   >  1:1504763/1‑140

                                                                                            CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATA                                              >  1:735489/1‑140

                                                                                            CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATA                                              >  1:485970/1‑140

                                                                                            CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTACCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATA                                              >  1:736816/1‑140

                                                                                             CAGATGACAAACATGATCTCATAACAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAA                                             <  2:662564/140‑1

                                                                                                 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGAT                                         <  2:1081073/140‑1

                                                                                                    CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATAGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTAAAGAGTTGCTATAAGTATGat                                      >  2:18953/1‑138

                                                                                                       ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGC                                   <  2:1447019/140‑1

                                                                                                       ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGC                                   <  1:1744456/140‑1

                                                                                                         aaGATCTCATATCAGGGACTTGTTCGCACCTTCCTTCAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAAGACTACAGAGTGGCTATAAGGATGTTAGCCA                                 <  2:183204/138‑1

                                                                                                         ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCA                                 <  1:1780170/140‑1

                                                                                                         ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCA                                 <  1:1273684/140‑1

                                                                                                         ATGATCTAATATCAGGGACTTGTTCGCACCTTCCTTATAGGATTAAACTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTATTACTACAGAGTGGCTATAAGGATGTTAGCCA                                 <  1:871776/140‑1

                                                                                                          TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATAGCGTCACTTCACCGCAAAACTTAAAGAAGTTAAATAAAAACTACAGAGAGGCTATAAGGATGATAGCCAC                                >  2:58128/1‑140

                                                                                                            ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTC                              >  1:1215545/1‑140

                                                                                                                CATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGATAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTT                          <  1:44236/140‑1

                                                                                                                   ATCAGGTACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCTAAAGTATTGCGACACTTCACAGCAAAACTTAAAGAACTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACACTCTTACC                       >  2:705423/1‑140

                                                                                                                        GGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACA                  <  1:1001328/140‑1

                                                                                                                        GGACTTGTTCGCAACTTCCTTATAGGATTAACCTTTACGTACGATCCGTAAGTATTGCGTCACTTCTCCGCAATACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTTTAAGGATGTTAGCCACTCTCTTACCCTACA                  <  2:857838/140‑1

                                                                                                                           CTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCC               >  1:715274/1‑140

                                                                                                                           CTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCC               >  2:1298053/1‑140

                                                                                                                           CTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCC               >  1:715484/1‑140

                                                                                                                                        TCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGTAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAA  >  2:892778/1‑140

                                                                                                                                        TCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAA  >  1:1188435/1‑140

                                                                                                                                        TCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAA  >  1:939892/1‑140

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289975‑2290113

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAA  >  NC_000913/3890075‑3890211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A