Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F71 I1 R1	18	85.1	3251134	97.2%	3160102	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	3,890,075	IS5 (–) +4 bp	coding (1346‑1349/1416 nt)	tnaA →	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	113 (1.230)	39/276	0.3	97.3%	noncoding (1/1195 nt)	IS5	repeat region
*	?	NC_000913	3890075 =	3 (0.030)	113 (1.230)	39/276	0.3	97.3%	coding (1346/1416 nt)	tnaA	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
*	?	NC_000913	3652036 =	NA (NA)	160 (1.740)	36/276	0.5	98.1%	noncoding (1195/1195 nt)	IS5	repeat region
*	?	NC_000913	= 3890078	3 (0.030)	160 (1.740)	36/276	0.5	98.1%	coding (1349/1416 nt)	tnaA	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

Only 100 of 113 total aligned reads displayed.

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289975‑2290113

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAA  >  NC_000913/3890075‑3890211

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                          >  2:910835/1‑140

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                          <  2:591162/140‑1

 AAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT                                                                                                                                         <  1:1053742/140‑1

  acTCTCTTTTCAGGTCTGACGGCGCTTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACCAACAGGCTCTCATATCAGGGACTTGTTCGCACCTTCCTaa                                                                                                                                        >  2:493321/3‑138

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGTCTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:758144/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:1498186/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:678565/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:263960/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:105193/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:689732/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:29529/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:739190/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:758121/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:1563760/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  1:543971/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  1:154677/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:1292906/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  1:1131193/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:1392169/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                        <  2:366982/140‑1

   ATCTCTTTTCTTGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  2:305161/140‑1

   ATCTCTTTTCTGGTCTGTCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  2:830260/140‑1

   ATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  2:1319741/140‑1

   ATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  1:1356/140‑1

   ATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  2:813963/140‑1

   ATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  2:305416/140‑1

   ATCTCTTTTCTGGTCTGACGGCGCTTACTCCTGAATTCACTGTCGGCGAACGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATCATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA                                                                                                                                       <  1:158742/140‑1

    TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAA                                                                                                                                      >  1:741602/1‑140

    TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAA                                                                                                                                      >  1:1338071/1‑140

    TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAA                                                                                                                                      >  2:1321448/1‑140

        TTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGAT                                                                                                                                  <  1:567252/140‑1

         TTTCTGGTCTGTCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATT                                                                                                                                 <  2:667914/140‑1

         TTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATT                                                                                                                                 <  1:1239576/140‑1

         TTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGAAGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATT                                                                                                                                 <  2:808871/140‑1

           TCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAA                                                                                                                               <  2:684717/140‑1

                      GGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTAC                                                                                                                    <  2:1505110/140‑1

                          CTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAAC                                                                                                                <  2:943226/140‑1

                          CTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAAC                                                                                                                <  2:1227996/140‑1

                                         ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTC                                                                                                 >  2:753499/1‑140

                                         ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTC                                                                                                 >  1:141573/1‑140

                                                    AGGTACGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTCCGAACCGAAAGTATTGCGTCACTTCACCGCA                                                                                      <  2:1111616/140‑1

                                                    AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCA                                                                                      <  2:1486045/140‑1

                                                    AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCA                                                                                      <  2:225913/140‑1

                                                    AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCA                                                                                      <  1:1356085/140‑1

                                                    AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCA                                                                                      <  2:904191/140‑1

                                                    AGGTAAGATGATGACTCATGATGACCCCTGGTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGGATTGCGTCACTTCACCGCA                                                                                      <  2:904488/140‑1

                                                     GGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAA                                                                                     >  2:536809/1‑140

                                                      GTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAA                                                                                    <  2:446694/140‑1

                                                       TAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAg                                                                                   <  2:141573/140‑2

                                                       TAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAA                                                                                   <  1:594167/140‑1

                                                       TAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAA                                                                                   <  1:594086/140‑1

                                                       TAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAA                                                                                   <  1:1131222/140‑1

                                                             GATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAA                                                                             <  1:1446576/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  2:1252292/140‑1

                                                                       GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAT                                                                   <  2:88074/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:389237/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:405879/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:448132/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1078403/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1065861/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1037462/140‑1

                                                                         TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTGTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTA                                                                 <  2:1137825/140‑1

                                                                          GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAA                                                                <  1:296113/140‑1

                                                                          GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAA                                                                <  2:945349/140‑1

                                                                               CTGATCTATGGCACCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTACCTTAAAGGATAAACCATTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTA                                                           <  2:1273609/140‑1

                                                                                   TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGA                                                       <  1:131730/140‑1

                                                                                    CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAG                                                      <  2:1470404/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  2:723206/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  2:427609/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  2:1325539/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  2:1325545/140‑1

                                                                                     TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGT                                                     <  2:427515/140‑1

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   <  1:1327526/140‑1

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   >  2:779919/1‑140

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   >  2:116371/1‑140

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   >  2:113593/1‑140

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   <  2:1133114/140‑1

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGG                                                   >  2:739154/1‑140

                                                                                            CCAGATGACAAACATGTTCTCATATCAGGTACTTGTTCGCACCTTCCTTAAAGGATTAACATTTACGTACGAACCGAAAGTATTGCGTCACGTCACCGAAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATA                                              <  2:1249017/140‑1

                                                                                            CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATA                                              >  1:9459/1‑140

                                                                                                         ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCA                                 <  2:373213/140‑1

                                                                                                         ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCA                                 <  1:576360/140‑1

                                                                                                         ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAAATAATACTACAGAGTGGCTATAAGGATGTTAGCCA                                 <  1:878987/140‑1

                                                                                                          TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCAC                                <  1:1006808/140‑1

                                                                                                            ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAATAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTC                              >  1:92464/1‑140

                                                                                                            ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTC                              >  1:92195/1‑140

                                                                                                              CTCATATCAGGGACTTGTTCGCACCTTCCTTAAATGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTC                            <  2:226589/140‑1

                                                                                                              CTCATATCAGGGACATGTTCGCACCTTCCTTAAAGGATTACCCTTTACGTACGTACCGAAAGTATTGCGTCACTTCACCGCAAAAATTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAATGATGTTAGCCACTCTC                            <  2:778147/140‑1

                                                                                                                CATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTT                          <  2:1460189/140‑1

                                                                                                                CATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTT                          <  1:1044899/140‑1

                                                                                                                CATATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTT                          <  1:1044615/140‑1

                                                                                                                   ATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATA                                                              <  2:1047194/101‑1

                                                                                                                   ATCAGGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATA                                                              >  1:1047194/1‑101

                                                                                                                       GGGACTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTAC                   >  1:1497341/1‑140

                                                                                                                           CTTGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCC               >  2:429503/1‑140

                                                                                                                             TGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTC             >  1:995234/1‑140

                                                                                                                             TGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTC             >  1:814213/1‑140

                                                                                                                             TGTTCGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTC             >  1:1009980/1‑140

                                                                                                                                 CGCACCTTCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATA         >  1:186556/1‑140

                                                                                                                                        TCCTTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTTAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAA  <  2:898099/140‑1

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289975‑2290113

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAAGGATTAACCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAA  >  NC_000913/3890075‑3890211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A