Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F71 I1 R1
|
21 |
57.4 |
2535598 |
87.8% |
2226255 |
142.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
568,268 |
IS1 (–) +9 bp |
intergenic (+21/‑39) |
renD → / → emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
19796 = | NA (NA) | 49 (0.730) |
41/280 |
0.6 |
100% |
noncoding (768/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
= 568276 |
0 (0.000) | intergenic (+29/‑39) |
renD/emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| * |
? |
NC_000913 |
= 258675 | NA (NA) | 57 (0.840) |
46/282 |
0.4 |
100% |
noncoding (1/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
568268 = |
0 (0.000) | intergenic (+21/‑47) |
renD/emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19938‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTCCCATTC < NC_000913/568276‑568137
AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC > 2:53717/1‑143
cgtCATAACCTGAATTTGAGGCAGCATCTGTCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:223868/140‑1
ACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAATTCGTTGTCGTTCTCAAAATCGTTGTATCTGCATGACAATGTTTTCGGGAATTATCTGAACAGAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTG < 1:923988/143‑1
CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAGAATCGGTGGAGCTGCCTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAATAAGCTGGAGGCATTACCTACAGGTTGAA > 2:1114250/1‑143
CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCACTATCTGAACATAAAACACTATCAATAAGTTGGAGACATTACCTACAGTTTGAA > 2:1125574/1‑143
CTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAAC < 1:1057810/143‑1
GGCAGCCCCTGGGCCGGCTGGGACGGAAGTCGCTGTCGCTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCAC < 2:785603/143‑1
CTGGCACGGCTGGGACGGAAATCGCTGTAGTTGTATAAGTTGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTCGAGTCATTACCTACAGTTTGAACTCAACTCAACTGTTTCA > 2:85269/1‑143
CACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATAAATAAGTTGGAGTCATTACATACAGTTTGAACTCAACTCACATGTTTCAT‑CAT > 1:367031/1‑143
ACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAATCATTACCTACAGTTTGAACTCAACTCAACTGTTTCAT‑CATT > 1:456113/1‑143
GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCC > 1:1266285/1‑143
AGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCTTTATTATGTTATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGAT < 1:768577/143‑1
AGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGTCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGAT < 1:325237/143‑1
CGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGTGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTT > 1:255244/1‑143
CGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACATACAGTTTGCAATCAATTTACCTGTTTCAT‑CATTGTGTTCCCATTGATGTg > 1:217043/1‑142
GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGATCCCATCGATGTTC > 2:1133428/1‑143
CTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTAAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGAAGTTCT > 2:1032878/1‑143
TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATAC < 1:53717/143‑1
AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCT < 1:701278/143‑1
atttGTGGAGCTTGATGACAAATTCATCGGGCATTATCTGAACATAACACACTATCAATAAGTTGGTGTCATTACCTATAGTTTGATCTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATATCCTCA < 2:104847/139‑1
ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGCGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATTCCCTCA > 2:778637/1‑143
ATCGGCGGTGCTGCATGACAAAGTCATCGGGCATTATCTTAACATAAAACACTATCATTATTTTTGTTTTATTACTTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCA < 1:607721/143‑1
GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGATGCCCTTGATGCTATTACTGAGACCCTCAATAC > 2:1081374/1‑143
gggGCTGTATGTCATAGTCAGCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTGGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTTATGTTCTTTTATATACCCTCAATACCC < 2:512212/140‑1
GGAGCTGCATGACAAAGTCATCGTGCATTATCTGAATATGAAACACTATCAATAAGGTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTGTCAT‑CATTGTGTTCCCATTGATTTTCTTTTATATACCCTCAATACCC < 2:277530/143‑1
AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCCACTCACCTGGTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCCATACACGT > 2:737667/1‑143
TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTGCCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTC < 2:432264/143‑1
CATGACAAAGTCATCGGTCATTATCTGAACATAATACACTATCAATAATTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCAT < 1:17752/143‑1
GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGC < 2:773896/143‑1
actAAGTCATCGGACATTATCTCAACATAAAACACTATCAATAAGTTGTAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATACTTTGT‑TGCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCG < 2:255244/140‑1
ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGTGTCATTACCTACAGTTTGATCTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCG < 1:798415/143‑1
ACAAAGTCAGCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGTAGTCATTACCTACAGTTTGAAGTCAACTCACCTGTTTCAT‑CAGTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCG < 1:1155811/143‑1
catAGTCATCGCGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGG < 2:617897/140‑1
AAGTCATCGTGCATTATCTGATCGTAACACACTATACATAAGTTGTAGTCATTACCTACAGTTTGAACTCAACTCACCAGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCA < 2:487594/143‑1
tTCATCGGTCATTATTTGAACATTATACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACT < 1:1239544/142‑1
cactTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGA < 2:722337/139‑1
TATCTCAACATAAAACACTATCAATAAGTTGTTGTCATTTCCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTC < 1:142754/143‑1
TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATATCCGTTTCATCACGGCACTCTGTCGACACTCCTTA > 2:654515/1‑143
ACATAGAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAA < 2:864646/143‑1
TAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATC < 1:957086/143‑1
AAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGTCGACACTCCTTAAAAATCA > 2:1235846/1‑143
TATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACACGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGa > 2:966665/1‑142
ATCAATAAGTCGGAGTCATTACCTACAGTTTGAACTCAACTCACCTTTTTCAT‑CATTGTGTTCCCATTGCTGGTCCCCTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTG < 1:777109/143‑1
TCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATAACATAAATACACGTTTCATAACGGCACACTGGCGACACTCCTTAGAAATCAGATTAGTGC > 1:764676/1‑143
AGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTTTGTTCTCTTTGATGTTATTTAATATACCCTCAATACCCGTTTCATCGCGGCAGGCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCT < 1:449859/143‑1
TTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTCAAAATCAAATCAGTGCTCACCTct > 2:1139002/1‑141
GTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATTTCTTTTTCATCGTGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC < 1:660833/143‑1
GTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC < 1:1166441/143‑1
ATTACCTAGAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATCCCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTCCCA < 2:776507/143‑1
ACCTACAGTTTGAACTCAACTCATCTGTTTCAT‑CATTGGGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACCCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTCCCATTC < 2:325425/143‑1
AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19938‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAGTTTGAACTCAACTCACCTGTTTCAT‑CATTGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTCCCATTC < NC_000913/568276‑568137
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
