Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F20 I0 R1
|
33 |
26.4 |
1163560 |
84.9% |
987862 |
142.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC JC |
NC_000913 |
568,268 |
IS1 (–) +9 bp |
100% |
intergenic (+21/‑39) |
renD → / → emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 258675 | NA (NA) | 29 (1.030) |
28/264 |
NT |
100% |
noncoding (1/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
568268 = |
0 (0.000) | intergenic (+21/‑47) |
renD/emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| * |
? |
NC_000913 |
= 568276 | 0 (0.000) | 20 (0.720) |
17/262 |
NT |
100% |
intergenic (+29/‑39) |
renD/emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 |
= 1050545 |
NA (NA) | noncoding (768/768 nt) |
IS1 |
repeat region |
CTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258537‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACG > NC_000913/568268‑568400
CTGCTGTCCGGCCGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTTAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAA < 2:387584/143‑1
TGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAAC > 1:5524/1‑143
TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTAAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAG < 2:76765/143‑1
GTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAAAAGAAGCCACTGGAGCACCTAAAAAACACCATCATACATTAAATAAGTAAATTAGCAACATAACACAAACAGTAGTACAATT > 1:406557/1‑143
cccTTACGCACCACCCCGACAGTAGCCGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGT < 1:372488/140‑1
TTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGAAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTAGGCAGCAAAACCCAAACTGTAGTACAATTCTCTCCAGTTTG > 1:536936/1‑143
AGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCTGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTAT < 1:388286/143‑1
AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTCAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGAAAAGAATATGCTATGAACa > 1:247593/1‑142
GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTA > 2:288049/1‑143
AGGGACAGCTTATAGAAACAGTAGCCACTGGAGTACCTCAAAAACATCATCATACACTAAATCAGTAAGGTGGCAGCAGCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATA < 1:202926/143‑1
AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAAAACTTATA > 1:210050/1‑143
GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATT > 2:53285/1‑143
ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACCGGACAGAATATGCTATGAACCCTTATAATTA > 2:239822/1‑143
AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAACCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACAATTATAGTTATC > 1:483012/1‑143
CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTT < 2:5524/143‑1
TGATAGAAACAGAAGCCACTGGAGCAGCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCGTCACCCAAACTGTAGTACAATTCTCTCCAGTTTGGACAGGAAAGAATATGCTATGAACCCTCATATTTATCTTG > 2:551786/1‑143
ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTACGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTCGAACAGGAAAGAATATGCTATGAACACTTATAATTATATTGGT > 1:237563/1‑143
ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACGCAAACTGTAGTACAATTCTCGACAGTATGAACAGGAAAGAATATGCTAAGAACCCATATATTTATCTTGat > 1:236633/1‑141
TAGTAACAGAAGCTACTGTAGCACCTCATAAACATCATTATACACTATATCAGTAAGTTGGCAGCATCACACAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTG < 1:312688/143‑1
TAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTG > 2:129328/1‑143
AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCAAAGAACCATACAATATATCCTGGTGGTG > 1:399545/1‑143
AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATACTATGAACCCTTATATTTATCTTGGTGGTGCAAT > 1:339337/1‑143
GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGAAGTACAATTCTCTCCAGTTTGAACAGGAACGAATATGCTATGAACCCTTATATTTAACCTGGTGATGCAATACTT > 2:357777/1‑143
CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCACTACTTG > 2:236943/1‑143
CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTGGTACCATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCATATATTTAGCTTTGTGGTTCAAAACTTGCAGAGGTCATTG > 1:393650/1‑143
caattcCACCATCATTATGTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTGATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGT < 1:572071/137‑1
TACACTAAATCATTAAATTGCCATCTGCACCCAAACTGTAGTACAATTCTCTCCAATTTGAACAGGAAAGAATATGCTATGACCCCTTAAATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAA < 1:208124/143‑1
CACTAAATCAGTAAGTTGGCAGCATCACCCATACTGTATTATAATTCTCTTCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGT < 1:291877/143‑1
ACTAAATCAGTAAGTTGGCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTAGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTT > 1:297324/1‑143
TTGTCAGCATCACCCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTA < 1:411505/143‑1
CAGCATCTCCCAAACTGTAGTACAATTCTCTCCATTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTAGCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACG < 1:30744/143‑1
CTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258537‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACG > NC_000913/568268‑568400
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
