Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F84 I1 R1
|
23 |
34.8 |
1446234 |
89.3% |
1291486 |
142.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
568,268 |
IS1 (–) +9 bp |
intergenic (+21/‑39) |
renD → / → emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
19796 = | NA (NA) | 37 (0.940) |
32/282 |
0.2 |
100% |
noncoding (768/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
= 568276 |
0 (0.000) | intergenic (+29/‑39) |
renD/emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| * |
? |
NC_000913 |
= 258675 | NA (NA) | 35 (0.880) |
28/284 |
0.4 |
100% |
noncoding (1/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
568268 = |
0 (0.000) | intergenic (+21/‑47) |
renD/emrE |
DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19938‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC < NC_000913/568276‑568143
AGCGGCATAACCTGAAACTGAGGCAGCACCGGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC < 1:495234/143‑1
GGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTAC < 2:260293/143‑1
CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGA > 2:453701/1‑143
CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAA > 1:260627/1‑143
AATCTGAGGCATTGCCTGGCACGGTTGTGATGGAAGTCGCTGTCTTTCTCAAAATCTGTTGAGCTGCATGACAAAGTCATAGGGCATTATTTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTC < 2:434567/143‑1
agcCAGTACCTGCCCCGGCCGGGACGGTAGTCTCTCTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCTGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCA < 1:191152/140‑1
GGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTCTGAACTCAACTCAC < 2:441765/143‑1
GCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACCCAACTCACCTGTTTCATCA > 1:413257/1‑143
ACGGAAGTCGCTGGCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCA < 2:387880/143‑1
CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGCGCTGCATGACAAAGTCCTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATTAT‑TGTGTTCCCAT > 1:422612/1‑143
GGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATT > 1:571869/1‑143
agcCGCTGTCGTTCTCAAAAGCGGGGGAGCTGCATGCCAAAGTAATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGAT < 1:405030/140‑1
TCGTTCTCAAAATCGGTGGTGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAAGAAGGGGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTT < 1:582171/143‑1
TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTT < 2:519641/143‑1
TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑GGTGTTCCCATTGATGTTCTTTT > 1:178194/1‑143
TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATA < 1:676997/143‑1
TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCAGCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATA < 1:357665/143‑1
TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTAACA‑CATCTGGCTTCCGATTGATGTTCTTTTATATACCCTCAA < 1:138240/143‑1
AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGT < 1:287213/143‑1
ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATC < 1:387415/143‑1
TGACAGAGTCATCGGGCACTGTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCG < 2:174034/143‑1
GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCACTAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCCT‑TGTGTTCCCATTGATGTTCTCTCATATACCCTCAATACCCGTTCCACCGC > 2:27399/1‑143
ACAAAGTCCTCGGGCATTATCTGAACATAAAACACTATCAATAAGGTGGGGTCAGTAACTACAGTTTGCACTCAACTCACCTGTTTACTCAT‑TGTGTTCCCATCGATGTTCTTTTCTCTACCCTCAAGACCCGTGTCGTCGCG > 2:715644/1‑143
CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGG < 2:304448/143‑1
TCGGGCAATATCCGAACACAAAACACTATCAATAAGTTCGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGG < 2:234856/143‑1
GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGA < 2:370464/143‑1
CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACACTCAATACCCGTTTCATCGCGGCCCTCTAGCGACA > 2:398347/1‑143
ATTATCTGCACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACAC < 2:253733/143‑1
TGAACATAAAACACTATCAATATGTTGGAGTCAGTACCGACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTA < 1:131104/143‑1
TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTA < 1:632185/143‑1
AACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTAATCGCGGCATTCTTGCGACACTCCTTAAA > 2:207448/1‑143
CATAAAACACTATCAATAAGTTGGAGTCATAACCTACAATTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTCCTATATACCCTCAATACCCGCTTCATCGCGGCACTATGGCGACCCTCCTTACAAA > 2:404833/1‑143
TAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATC < 1:83051/143‑1
CAATCAGTTCGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATCCCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCT < 2:272560/143‑1
CAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTGCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCT < 2:359625/143‑1
AATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGATTCCTCGGCGTATTCTTTCGTCTGTCCTTAAGAATCAGATTCGTGCTC > 1:488197/1‑143
TGGAGTTATTACCTACAGTTTGGACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTC < 2:78550/143‑1
GTCATTACGTATAGTTTGAACTCATCTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC < 2:438490/143‑1
AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19938‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC < NC_000913/568276‑568143
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
