Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F61 I1 R1	6	99.1	3449044	98.9%	3411104	135.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	4,561,269	G→A	S41S (AGC→AGT)	yjiR ←	putative DNA‑binding transcriptional regulator/putative aminotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,561,269	0	G	A	100.0%	295.7 / NA	74	S41S (AGC→AGT)	yjiR	putative DNA‑binding transcriptional regulator/putative aminotransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (36/38); total (36/38)

TCCACCGGGCGCTGCACCGGACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTGCTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTATTCCTTAT  >  CP009273/4561132‑4561405

tCCACCGGGCGCTGCACCGGACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACt                                                                                                                                        <  1:1622316/140‑1 (MQ=255)

tCCACCGGGCGCTGCACCGGACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACt                                                                                                                                        <  2:1647163/140‑1 (MQ=255)

   aCCGGGCGCTGCACCGGACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGAt                                                                                                                                     >  2:1127719/1‑140 (MQ=255)

             gCACCGGACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCg                                                                                                                           <  2:1202152/140‑1 (MQ=255)

                  ggACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTc                                                                                                                      <  2:1162126/140‑1 (MQ=255)

                  ggACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTc                                                                                                                      <  2:1582694/140‑1 (MQ=255)

                  ggACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTc                                                                                                                      <  2:482600/140‑1 (MQ=255)

                  ggACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTc                                                                                                                      <  2:1411269/140‑1 (MQ=255)

                   gACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTcc                                                                                                                     >  2:657763/1‑140 (MQ=255)

                        gTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACt                                                                                                                >  1:448498/1‑140 (MQ=255)

                         tCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACtt                                                                                                               >  1:893354/1‑140 (MQ=255)

                                  gTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTgcgc                                                                                                      >  2:824673/1‑140 (MQ=255)

                                  gTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTgcgc                                                                                                      >  2:824699/1‑140 (MQ=255)

                                  gTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTgcgc                                                                                                      >  2:839766/1‑140 (MQ=255)

                                  gTACTGGCGGCTGGGCTTTACGATGTCCGACAAAATAACCCTAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTgcgc                                                                                                      >  2:370356/1‑140 (MQ=255)

                                         cggcTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCg                                                                                                                           >  2:228205/1‑112 (MQ=255)

                                         cggcTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCg                                                                                                                           <  1:228205/112‑1 (MQ=255)

                                          ggcTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACgg                                                                                              <  2:726652/140‑1 (MQ=255)

                                             tGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCaa                                                                                           >  2:103248/1‑140 (MQ=255)

                                             tGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCaa                                                                                           >  2:1569202/1‑140 (MQ=255)

                                                     aCGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTccc                                                                                   <  2:1500641/140‑1 (MQ=255)

                                                     aCGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTccc                                                                                   <  1:606668/140‑1 (MQ=255)

                                                     aCGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTccc                                                                                   <  2:448498/140‑1 (MQ=255)

                                                          gtgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGa                                                                              <  1:1569202/140‑1 (MQ=255)

                                                          gtgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGa                                                                              <  1:1545899/140‑1 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTc                                                                                                                      <  2:1032300/99‑1 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTc                                                                                                                      >  1:1032300/1‑99 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGa                                                                              >  1:1469924/1‑139 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGa                                                                              <  2:1469924/139‑1 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGAc                                                                             >  2:249066/1‑140 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGAc                                                                             >  2:248077/1‑140 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGAc                                                                             >  1:623326/1‑140 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGAc                                                                             >  1:36957/1‑140 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGAc                                                                             >  1:1693723/1‑140 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGAc                                                                             >  1:1566749/1‑140 (MQ=255)

                                                           tgCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGAc                                                                             >  2:843148/1‑140 (MQ=255)

                                                               aCAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATa                                                                         <  2:152887/140‑1 (MQ=255)

                                                               aCAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATa                                                                         <  2:1305927/140‑1 (MQ=255)

                                                                 aaaaTAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACa                                                                       >  2:401200/1‑140 (MQ=255)

                                                                   aaTAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGc                                                                     >  2:938116/1‑140 (MQ=255)

                                                                    aTAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGcc                                                                    <  2:1313708/140‑1 (MQ=255)

                                                                    aTAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGcc                                                                    <  2:1468130/140‑1 (MQ=255)

                                                                    aTAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGcc                                                                    <  2:1312610/140‑1 (MQ=255)

                                                                     tAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGccc                                                                   >  1:243797/1‑140 (MQ=255)

                                                                     tAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGccc                                                                   <  1:657763/140‑1 (MQ=255)

                                                                              cgcgGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAAt                                                          >  1:1078255/1‑140 (MQ=255)

                                                                                  gCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGt                                                      <  1:843148/140‑1 (MQ=255)

                                                                                            gatgaGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCa                                            <  2:105473/140‑1 (MQ=255)

                                                                                              tgaGCTTCATCGTCTCCATCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCaga                                          <  1:938116/140‑1 (MQ=255)

                                                                                              tgaGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCaga                                          <  2:1391855/140‑1 (MQ=255)

                                                                                              tgaGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCaga                                          <  2:1637202/140‑1 (MQ=255)

                                                                                              cgaGCTTCCTCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGAGACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACACCCCTTGCTCAATCCGTTCGGCAAGCaga                                          <  2:730819/139‑1 (MQ=255)

                                                                                                   ttCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGc                                     <  1:641253/140‑1 (MQ=255)

                                                                                                     cATCGTCTCCAGCGTCTGATACGCCTGCTGCACTGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCa                                   >  1:1353770/1‑140 (MQ=255)

                                                                                                     cATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCg                                                                                 >  2:145140/1‑94 (MQ=255)

                                                                                                     cATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCg                                                                                 <  1:145140/94‑1 (MQ=255)

                                                                                                            tcCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCg                                                                                                                           >  1:1269042/1‑45 (MQ=255)

                                                                                                            tcCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCg                                                                                                                           <  2:1269042/45‑1 (MQ=255)

                                                                                                            tcCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGc                                     <  1:1237846/131‑1 (MQ=255)

                                                                                                            tcCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGc                                     >  2:1237846/1‑131 (MQ=255)

                                                                                                            tcCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTg                            >  1:809871/1‑140 (MQ=255)

                                                                                                            tcCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTg                            >  1:1373585/1‑140 (MQ=255)

                                                                                                            tcCAGCGTCTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTg                            >  1:1319397/1‑140 (MQ=255)

                                                                                                                    cTGATACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAAcgcg                    >  2:1618338/1‑140 (MQ=255)

                                                                                                                       aTACGCCTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCa                 <  1:401200/140‑1 (MQ=255)

                                                                                                                            ccTGCTGCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTg            <  2:1642809/140‑1 (MQ=255)

                                                                                                                             ctgctgCACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGt           <  1:1050651/140‑1 (MQ=255)

                                                                                                                               gctgcACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTAt         <  2:1358782/140‑1 (MQ=255)

                                                                                                                                ctgcACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTAtt        >  2:28793/1‑140 (MQ=255)

                                                                                                                                 tgcACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTATTc       <  2:664378/140‑1 (MQ=255)

                                                                                                                                 tgcACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTATTc       >  1:1452417/1‑140 (MQ=255)

                                                                                                                                   cACGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTATTCCt     >  2:526458/1‑140 (MQ=255)

                                                                                                                                     cGGTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTATTCCTTa   >  2:1216902/1‑140 (MQ=255)

                                                                                                                                      ggTACTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTATTCCTTAt  <  1:1010632/140‑1 (MQ=255)

TCCACCGGGCGCTGCACCGGACGCGTCATCGGCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGTGCTGATACTGACGCCGTGCTCCTGACTTAAGCTGCGCACCGACGGCAATTTCTCCCCGTGACGATACAGCCCTTGCTCAATCCGTTCGGCAAGCAGAGTCGCCAGATGTTGATAACGCGTCATGCTGTATTCCTTAT  >  CP009273/4561132‑4561405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A