Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F9 I0 R1 86 138.2 2894862 96.7% 2799331 224.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,173,3610C.88.6% 384.6 / 25.9 105pseudogene (2/442 nt)gatCpseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base C (1/11);  new base . (62/31);  total (63/42)
Fisher's exact test for biased strand distribution p-value = 1.44e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.
*NC_0009132,173,3620C.88.7% 379.9 / 18.9 105pseudogene (1/442 nt)gatCpseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base C (0/7);  new base . (62/31);  total (63/42)
Fisher's exact test for biased strand distribution p-value = 7.88e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

Only 100 of 112 total aligned reads displayed.

GCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCA  >  NC_000913/2173129‑2173599
                                                                                                                                                                                                                                          ||                                                                                                                                                                                                                                             
     cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccaccgc                                                                                                                                                                                                                                             >  2:381343/1‑229 (MQ=255)
     cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccaccgc                                                                                                                                                                                                                                             <  1:381343/231‑3 (MQ=255)
              gtgCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc                                                                                                                                                                                                                           <  1:117877/238‑1 (MQ=255)
              gtgAAAACCAATAGTTTGCGGCGGGATCCACAGGGTGATCCTCAGAATAATGACACCCGAAATTAAGGGGCGAAACAGATTCCCACGAGGAACGGCGCCCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc                                                                                                                                                                                                                           <  2:961486/238‑1 (MQ=255)
               tgCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAgcagca                                                                                                                                                                                                                          >  1:501061/1‑238 (MQ=255)
               tgCAAACCAATAGTTTGCGTCGCGATCCACAGGCAGATGCTCATAATGATGACACCCGAGATTAGGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGCTCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CAGCCGTATGTCCCAgcagca                                                                                                                                                                                                                          >  2:147481/1‑238 (MQ=255)
                  aaaCAAATAGGTTGCGTCGCGATCAACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTACACGATGCCCGGCGACCGCCATCGCCCCGAAGAAGCCGAAGGTTACAAGATCGCCAAACGCCAGCACCTCATTACCCGG‑CAGCCAACAAGCAAT‑TAAAATGGTGAGAGGCACAAAAATCAGGCGTGCCGA‑ACC‑CACCGCACTATGCCCCAGGGGCAACg                                                                                                                                                                                                                       >  2:890430/1‑238 (MQ=255)
                     ccAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCgg                                                                                                                                                                                                                   >  1:811263/1‑239 (MQ=255)
                       aaTAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGa                                                                                                                                                                                                                  >  1:1015318/1‑238 (MQ=255)
                             ttGCGTCGCGATCCACAGGGTGAAGCTCAAAAGGATGACACCCGAGATTAAGGGGGGAAACAGATTTCCACAAGGCCCGGCGACCGCCATCGCCACGAAGAAGCCGATGGGGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGc                                                                                                                                                                                                           <  2:1242107/239‑1 (MQ=255)
                             gtGCGTGGCGATCCACAGGGTGAGGCTCATAAGGAGGACCCCCGAGATGAAGGTGCGGAACAGATTGCCACGATGCGCGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGc                                                                                                                                                                                                           <  2:1097361/238‑1 (MQ=255)
                              tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCATCAACGCCGGATCAAGGc                                                                                                                                                                                                           >  2:252662/1‑238 (MQ=255)
                              tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc                                                                                                                                                                                                          >  2:143650/1‑239 (MQ=255)
                              tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc                                                                                                                                                                                                          >  2:1270052/1‑239 (MQ=255)
                              tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc                                                                                                                                                                                                          >  1:991836/1‑239 (MQ=255)
                              tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGAATGTCCCAGCAGCAACGCCGGATCAAGGcc                                                                                                                                                                                                          >  1:61001/1‑239 (MQ=255)
                               ggttCGCGACCCACGGGGGGATGCTCAAAATGATGACCCCCGAGATTAAGGTGCGAAACAGATTTCCACGATGCACGGCGACCGCCATCGCCAGGAAGAAGCCGATGGTGGCAAGATCGCCAAAGGGCAGCACCTGATTACCCGG‑CACACAAGCAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCa                                                                                                                                                                                                         <  1:930032/236‑1 (MQ=255)
                                     cgATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAgg                                                                                                                                                                                                   >  1:486507/1‑239 (MQ=255)
                                          cacaGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGCGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGACCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACt                                                                                                                                                                                               >  1:495296/1‑238 (MQ=255)
                                                    tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg                                                                                                                                                                                    >  2:1013958/1‑239 (MQ=255)
                                                         aTAATGATGACACCCGTGATTAAGGTGCGCAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGCCAGCACCTGATTACCCGG‑CACACCAACAGCAAT‑TAAAATGGTGAGTGGGATACAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACACCGGCTAAAGGCCACTCAGGCACTCCTGACCGCCCAACt                                                                                                                                                                                >  2:1086717/1‑238 (MQ=255)
                                                         aTAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACt                                                                                                                                                                                >  1:364413/1‑238 (MQ=255)
                                                         aTAATGAGGACCCCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACtt                                                                                                                                                                               <  1:202269/239‑1 (MQ=255)
                                                           aaTGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGACCTTc                                                                                                                                                                              >  1:1292930/1‑238 (MQ=255)
                                                            atgatgACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGc                                                                                                                                                                            <  1:139784/239‑1 (MQ=255)
                                                            atatggccacCCGAGATAAGGGTGAGGAACAAATTCCCCCGAGGCACGGCGACCGCCAACGCCACGAAAAAGCCGATGGGGGAAAGACGGCCAAAGGGCAGCACCAGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGGGAGTGGGAAAAAAACCAGGCTGGCCGAGACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGc                                                                                                                                                                            <  2:251223/232‑1 (MQ=255)
                                                                tgaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAAATCCTGACCGCCGAACTTCGCCTGt                                                                                                                                                                        >  1:359428/1‑239 (MQ=255)
                                                                 gaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTa                                                                                                                                                                       >  1:87944/1‑239 (MQ=255)
                                                                 gaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTa                                                                                                                                                                       >  1:1279637/1‑239 (MQ=255)
                                                                  acacCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa                                                                                                                                                                      >  1:1418010/1‑239 (MQ=255)
                                                                  acacCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa                                                                                                                                                                      >  2:992775/1‑239 (MQ=255)
                                                                   cacCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa                                                                                                                                                                      >  2:31232/1‑238 (MQ=255)
                                                                    ccccGAGATTAAGGTGCGAAACAGATTCCCAGGATGCACGGCGCCCGCCACCGCCCCGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc                                                                                                                                                                    <  2:486507/238‑1 (MQ=255)
                                                                        gagaTTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACt                                                                                                                                                                >  1:3406/1‑239 (MQ=255)
                                                                          gaTTAAGTTGCGGAACAGATTCCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGGGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTa                                                                                                                                                               <  1:903647/238‑1 (MQ=255)
                                                                              agggggggaaaCAGTTTCCCACGATCTCCGGCCACCGCCATCGCCGCGAAGAGGCGGAGGTGGGCAGAACCGCCAAACGCCGGCACCTGATCACCCGG‑CACCCAACCAGCATT‑TAAATGGGTGGGGGGAAAAAAAATCGGGCTGGCGGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  2:1046303/230‑1 (MQ=255)
                                                                              aaGGTGCGGAAAAGTGTCCCACAATGCGCGACTACCCCCACCCCCACGAAGAAGCCGATGGTGCCAAGATCGCAAGATGGCAGCACCTAATCACCGGG‑CACACAAACATCAAT‑TAAAATGGGGGGTGGGATAAAAATCAGGGTTGCCGAAAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAGCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  2:501061/239‑1 (MQ=255)
                                                                               gggggggaaaCAGTTTCCCACGATGCCGGGCGCCCGCCACCGCCACGAAGAGGCCGATGGTGGCAAGACCGCCAAACGGCAGCCCCTGATTACCCGG‑CCCACAAACAGCAAT‑TAAAAGGGTGAGTGGGATAAAAATCAGGCTGGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  2:80474/230‑1 (MQ=255)
                                                                                gtggcgaaccAGTTTCCCACGGTGCGCGGCGCCCGCAATCCCAACGAAGACGCCGATGGTGGCAGTACCGCCAAAGGGCACCACCTAATTACCCGG‑CACCAAAACAGCAAT‑AAAAATGGTTAGTGGAATAAAAATCAGCCTTGCCAATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  2:1128237/228‑1 (MQ=255)
                                                                                ggTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAg                                                                                                                                                           >  1:78900/1‑236 (MQ=255)
                                                                                    cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  1:1060978/233‑1 (MQ=255)
                                                                                    cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          >  2:1060978/1‑233 (MQ=255)
                                                                                          aGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAAAAGCCGATGGTGGAAAGATCGCAAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt                                                                                                                                              <  1:695939/239‑1 (MQ=255)
                                                                                           gATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg                                                                                                                                                >  1:80474/1‑236 (MQ=255)
                                                                                            aTTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGATTAGCGATgg                                                                                                                                            >  2:850976/1‑239 (MQ=255)
                                                                                              ttCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGc                                                                                                                                          >  1:502550/1‑239 (MQ=255)
                                                                                              ttCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGc                                                                                                                                          >  1:1119109/1‑239 (MQ=255)
                                                                                                      tGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc                                                                                                                                  >  1:365060/1‑239 (MQ=255)
                                                                                                       gCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcca                                                                                                                                 <  1:1270052/239‑1 (MQ=255)
                                                                                                        cACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg                                                                                                                                                >  1:305275/1‑223 (MQ=255)
                                                                                                           ggCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGACCAAGGCCAATCAGGAACTCCTGACCGCCGCACTTCGCCTGTAAACGACTACGAGCCTCATTAGCGATGGGCGTTAAAccatcaa                                                                                                                             >  2:205100/1‑237 (MQ=255)
                                                                                                              aaCCGCCATCGCCACGAAAAACCCGATGGTGGCAAAACCCCAAAACGGCACCACCTGATTCCCCGG‑CAACAAAACAGAAAT‑AAAAATGGTGAGTGGGAAAAAAACCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatga                                                                                                                          <  2:1168577/238‑1 (MQ=255)
                                                                                                               aCCGCCATCGCCAGGAAGAAGCCGATGGAGGAAAGACCGCCAAACGGCGACACCTAATAACCCGG‑CAAACAAACAGAATT‑TAAAATGTTGGGTGGGATAAAAATCAGCCTTCCCG‑TACC‑CACCGCCGTATGTCCCAGCAGCAACGCCGAATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgat                                                                                                                         <  2:1418010/239‑1 (MQ=255)
                                                                                                                  gCCAGCGCCACGAAGACGCCGATGGTGGCAAGATCGCAAAACGGAAGCACCTGATTCCCCGG‑CACACAAACAGAAAT‑TAAAATGGTGAGTGGGATAAAAAGCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATggg                                                                                                                      <  2:897018/239‑1 (MQ=255)
                                                                                                                    caccGCCACGAAGAAGCCGAGGGGGGCAAGACCCCAAAAGGGCAGCACCTGATTACCGGG‑CACACAAACAGCAAT‑AAAAATGGTGAGTGGAATAAAAACCAGGCTGGCCGTTAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGtt                                                                                                                    <  2:78900/236‑1 (MQ=255)
                                                                                                                        cccAAGAAGAAGCAGAGGGGGGCAAGGCCGCAAAACGGCAGACCCGGATAACCGGG‑CACACAAACAGCAAT‑AAAAATGGGGGGTGGGATAAAAACCAGGCTGGCCGAT‑CC‑CGCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt                                                                                                                <  2:209453/238‑1 (MQ=255)
                                                                                                                          cACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGAGAGTGGGATAAAAATCACGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACCACGAGCCTGCTTAGCGATGGGCGTTAACCCATCCATGATGGGTTTAATc                                                                                                               >  1:463482/1‑238 (MQ=255)
                                                                                                                              aagacgCCGATGGTGGTAAAATCCATAAACGGCTGCCCCTGATTCCCCGG‑ACCACAGTGTGCATT‑AAACGTGGTGAGGAGCAAAAAAAACGGGTTGCCCGAT‑CC‑CCCCGCCGTATGTCCCAGCCGCAACGCCGTGTCAAGGCCAATCAGGAACGCCTGATCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCCTTAAACCATCCATGATGGGTTTAATCACCCg                                                                                                          <  2:466591/239‑1 (MQ=255)
                                                                                                                              aagaagCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGAAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCg                                                                                                          <  1:143650/239‑1 (MQ=255)
                                                                                                                                   gCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGAT‑AAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACTGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCAt                                                                                                    >  1:739279/1‑239 (MQ=255)
                                                                                                                                        tgggggCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTCGGTGGGATATAAATCAGGCTTGCCGATACCA‑‑CCACCGTATGTCCCAGCAGCAACGCCGGATCAACGCCAATCAGGAACTCCACACCGGCGAACTTCGCCGGTAAACGACTACGAGCCTGCTAAGGGATGGGCGATAAAACATGCATGGTGGGTTTAATCACCCGTGGCTTTagc                                                                                                >  2:1167455/1‑239 (MQ=255)
                                                                                                                                              cAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATc                                                                                          >  1:1098739/1‑239 (MQ=255)
                                                                                                                                                     gCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTgcc                                                                                    >  1:3721/1‑238 (MQ=255)
                                                                                                                                                       cAAACGGCAGCCCCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa                                                                                                                                    <  1:1334209/188‑1 (MQ=255)
                                                                                                                                                       cAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa                                                                                                                                    >  2:1334209/1‑188 (MQ=255)
                                                                                                                                                                     tgaatccccGC‑CACCAAAACACAAAT‑TAAAAGGGTGGGTGGGAAAAAAATCGGGTTGGCCGATAC‑‑CGCCGCCTTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAg                                                                   <  2:724201/233‑1 (MQ=255)
                                                                                                                                                                     tGATTACCCGG‑CACACAAACAGAAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAg                                                                   <  1:992775/239‑1 (MQ=255)
                                                                                                                                                                      gATTACCCGG‑CACACAAACAGAAAT‑TAAAAGGGTGAGGGGGATAAAAATCAGCCTGGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGc                                                                  <  1:570752/239‑1 (MQ=255)
                                                                                                                                                                        attcccGGCCACAAAAAAAGAAAT‑TAAAATGGTGGTTGGAAAAAAAACCAGGCTGGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAg                                                                   <  2:579789/234‑1 (MQ=255)
                                                                                                                                                                             ggg‑CCCACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAACCAGGCTTCCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATa                                                           <  1:1176031/238‑1 (MQ=255)
                                                                                                                                                                             cGG‑CACACCAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAAGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGATTAGCCATGGGCGTTAAACCATCACTGATGGGTTTAATCACCCGTGGCATTAGCAGCATCCCTGCCCCCCTTTCTACCGctcctcgcaat                                                            >  2:773439/1‑228 (MQ=255)
                                                                                                                                                                                 cacacaAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCATGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATaca                                                         >  1:1168552/1‑238 (MQ=255)
                                                                                                                                                                                  acacaAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATaca                                                         >  2:566986/1‑237 (MQ=255)
                                                                                                                                                                                  acacaAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATaca                                                         >  2:913493/1‑237 (MQ=255)
                                                                                                                                                                                      aaaCAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTAACCGCCGAACTTCGCCTGTAAACAACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCACCACTGCCGCCGTTTTTCCCGCGAGCTGCAAAACCCCttt                                                    >  2:1431541/1‑238 (MQ=255)
                                                                                                                                                                                       aaCACCAATATAAAGGGGTGA‑TGGGGTAAAAACCCGGGTTGCCGA‑ACCCCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAACCAGAAGCTCCTGCCCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTg                                                   <  2:926526/239‑1 (MQ=255)
                                                                                                                                                                                             aaT‑TAAAATGGTGAGTGGAATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGt                                            <  1:1017448/239‑1 (MQ=255)
                                                                                                                                                                                              aT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          >  2:1289385/1‑128 (MQ=255)
                                                                                                                                                                                              aT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTa                                           >  1:312306/1‑239 (MQ=255)
                                                                                                                                                                                              aT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGGAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTa                                           >  2:436769/1‑239 (MQ=255)
                                                                                                                                                                                               ataaaaaTGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  1:1289385/125‑1 (MQ=255)
                                                                                                                                                                                                  aaaaTGGGGAGTGGAAAAAAAACCAGGCTGGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAAcc                                        <  1:589636/239‑1 (MQ=255)
                                                                                                                                                                                                       ggTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGa                                   >  1:546519/1‑239 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgat                                                                                                                         <  2:483887/150‑1 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgat                                                                                                                         >  1:483887/1‑150 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt                                                                                                                >  1:847472/1‑159 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt                                                                                                                <  2:847472/159‑1 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTATCCCGCGAGGa                                >  1:484432/1‑239 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTACCCCGCGAGGa                                >  1:1682/1‑239 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                                >  1:1318516/1‑239 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                                >  1:584420/1‑239 (MQ=255)
                                                                                                                                                                                                          gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGCGGCATTAGCAGCATCACTGCCGCCGTTTTTCCCACCAGCCGCCATACACCTTTGACATAGTACCCCGCAAGGa                                >  2:639329/1‑239 (MQ=255)
                                                                                                                                                                                                          gAGTGGGAAAAAAATCAGGCTTGGCGATAC‑‑CCCGGCCTTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTTATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAgg                                 <  1:1431541/238‑1 (MQ=255)
                                                                                                                                                                                                                  tAAAGATCAGGCTTGACGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGCTCAAGGCCAATCAGGCACTCCTGCCCGCCGCACTTCGACTGTAAACGACTACGACCCTGCTTAGCGATGGCCGCTAAACCATCCCTGATGGGTTTAGTCACCCGTGGCATTAGCACCATCACTGCCGCCGTTCTTACCGCGAGCTGCACTACACCTTTCACATCGAAACCCGCGatgtggccgcg                         >  2:635872/1‑228 (MQ=255)
                                                                                                                                                                                                                          aGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcc                 >  1:1386300/1‑238 (MQ=255)
                                                                                                                                                                                                                          aGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcc                 >  2:623796/1‑238 (MQ=255)
                                                                                                                                                                                                                           ggCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcccc               >  2:696487/1‑239 (MQ=255)
                                                                                                                                                                                                                                   ccgatacccccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGATTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATcaca         <  1:850976/232‑1 (MQ=255)
                                                                                                                                                                                                                                    gtACCCCACCGCCGTAGGTCCCAGAAGCAACGCCGGACCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATcaca         <  2:1015318/237‑1 (MQ=255)
                                                                                                                                                                                                                                          ccccGCCGTTTGCCCCAGGAGCAACGCCGGATCAAGGCCAATCAGTAGCTCCGGTCCGCCGAACCTCGCCTGTAAACGACTACGCGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCa  <  1:147481/239‑1 (MQ=255)
                                                                                                                                                                                                                                          ||                                                                                                                                                                                                                                             
GCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGG‑CACACAAACAGCAAT‑TAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCA  >  NC_000913/2173129‑2173599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A