Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F27 I0 R1 98 139.2 2835800 97.9% 2776248 226.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,173,3610C.84.3% 276.9 / 33.0 83pseudogene (2/442 nt)gatCpseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base C (1/12);  new base . (47/23);  total (48/35)
Fisher's exact test for biased strand distribution p-value = 7.85e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.
*NC_0009132,173,3620C.84.5% 273.2 / 29.9 83pseudogene (1/442 nt)gatCpseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base C (1/11);  new base . (47/23);  total (48/35)
Fisher's exact test for biased strand distribution p-value = 1.72e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCA  >  NC_000913/2173125‑2173599
                                                                                                                                                                                                                                              ||                                                                                                                                                                                                                                             
aTTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCAAAGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGCGGAACAGATTCCCACGATGCCCGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATaccaccg                                                                                                                                                                                                                                              <  2:613767/239‑2 (MQ=255)
    gccgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGTGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGGGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATaccaccgccgg                                                                                                                                                                                                                                          >  2:1007932/1‑234 (MQ=255)
    gccgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGGGGGATAAAAATCAGGCTTG‑CCGAT‑CC‑CCCCGCCGt                                                                                                                                                                                                                                        >  2:895048/1‑239 (MQ=255)
      cccaaGTGGGGTGTGCAACCAAATAGTTGGGGTCGCGATCCACGGGTTGAGGCTCATAAGGAGGACCCCCGAGATAAAGGGGCGAAACAGATTTCCACGATGCACGGCGACCGCCACCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATaccaccgccgtat                                                                                                                                                                                                                                        <  2:627123/235‑8 (MQ=255)
                     cAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAc                                                                                                                                                                                                                        >  1:863966/1‑238 (MQ=255)
                      aaaCCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGc                                                                                                                                                                                                                      <  2:1067682/239‑1 (MQ=255)
                                gtggCGTGGCGATCACAAGGGTGATGCCAAAAATGATCACACCCGAAATAAAGGTGCGGAACAGATTCCCGGGATGCCCGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAACCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAgg                                                                                                                                                                                                            <  2:709099/236‑1 (MQ=255)
                                    cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGCATGTCCCAGCAGCAACGCCGGATCAAGGCCaa                                                                                                                                                                                                        >  2:939082/1‑239 (MQ=255)
                                     gccgcggcccACAGGGGGGTGCTCAAAAGGAGGACACCCGAGATAAAGGTCGGGAAAAGATTTCCACGTTGCCCGGCGACCGCCATCGCCACGAAGAGGCG‑ATTGGTGGCAAGATCGCAACACGGCAGCACCTGATTACCCGGCACACAAACGGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCaa                                                                                                                                                                                                        <  2:1322438/230‑1 (MQ=255)
                                        gcgATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAg                                                                                                                                                                                                    >  2:534434/1‑239 (MQ=255)
                                        gcaacccACAGGGTGATGCTCATAAGGATGACACCCGAGATTAAGGTGCGGAACAGATTCCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGAAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAg                                                                                                                                                                                                    <  1:303058/234‑1 (MQ=255)
                                          gagcaacaGGTGGATGCCCAAAATGATGCCCCCCGGATTTAAGGGGGGGAACAGATTTCCAGGAGGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAACCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAgg                                                                                                                                                                                                   <  2:507181/233‑1 (MQ=255)
                                          gATCCACAGGGTGATGCACAAAATGAGGACCCCCGAGATTAGGGTGCGGAAAAGATTTCCCCGATGCACGCCGACCGCCAGCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAgg                                                                                                                                                                                                   <  2:1139541/238‑1 (MQ=255)
                                                agggttGATGCTCATAATGATGACACCGGAGATTAAGGGGCGGAACAGATTTCCAGGAGCAACGCCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCGGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCt                                                                                                                                                                                            <  2:510426/234‑1 (MQ=255)
                                                 aGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCaa                                                                                                                                                                                                                         >  2:1374717/1‑209 (MQ=255)
                                                 aGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCaa                                                                                                                                                                                                                         <  1:1374717/209‑1 (MQ=255)
                                                   ggTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGCTaccaccgcc                                                                                                                                                                                                                                            >  1:239987/1‑187 (MQ=255)
                                                        tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGGTAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCACCGCCGGATCAAGGCCAATCAGGAACTCCTGAccgcc                                                                                                                                                                                     >  1:718761/1‑238 (MQ=255)
                                                        tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg                                                                                                                                                                                    >  1:1322154/1‑239 (MQ=255)
                                                             aTAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCTGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGCACt                                                                                                                                                                                >  2:186028/1‑238 (MQ=255)
                                                             aTAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACt                                                                                                                                                                                >  1:1109333/1‑238 (MQ=255)
                                                             aTAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACt                                                                                                                                                                                >  1:133796/1‑238 (MQ=255)
                                                              tAATGATGACCCCCGAGATTAAGGTGCGAAACAGATTCCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTc                                                                                                                                                                              <  1:895048/239‑1 (MQ=255)
                                                               aaTGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTc                                                                                                                                                                              >  1:485580/1‑238 (MQ=255)
                                                               aaTGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTc                                                                                                                                                                              >  1:869249/1‑238 (MQ=255)
                                                               aaTGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTc                                                                                                                                                                              >  1:77518/1‑238 (MQ=255)
                                                                    tgaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGt                                                                                                                                                                        >  2:947313/1‑239 (MQ=255)
                                                                    tgaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGt                                                                                                                                                                        >  2:484996/1‑239 (MQ=255)
                                                                    tgaCACCCGAAATTAAGGGGCGAAACAAATTCCCACGAGGCACGGCGACCGAACTCCCCACGAAGAACCG‑GATGGGGCCAAGATCGCCAAAGGGCAGCACCTGATTACCCGGCCCACAAACAACAATAAAAAGGGTGAGTGGGAAAAAAAACAGGCTTG‑CCAATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGt                                                                                                                                                                        <  2:1237122/239‑1 (MQ=255)
                                                                       cacCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa                                                                                                                                                                      >  1:756587/1‑238 (MQ=255)
                                                                       cacCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa                                                                                                                                                                      >  2:1084410/1‑238 (MQ=255)
                                                                       cacCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa                                                                                                                                                                      >  1:1280890/1‑238 (MQ=255)
                                                                         cccGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACg                                                                                                                                                                   >  1:37455/1‑239 (MQ=255)
                                                                                  agggTGCGGAACAGTTTCCCCCGTTGCCCGGCGACCGCCACCGCCCCGAAGAAGCC‑GATGGTGGCAAGACCGCCAAACGGCAGCACCTGATTCCCCGGCCCACAAACACAAATTAAAATGGTGAGTGGGATAAAAATCGGGCTTG‑CCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  2:564366/237‑1 (MQ=255)
                                                                                  acggTGCTGAAAAGGTTCCAACGTTCCACGGCGACCGCCATCCCCACAAAGAAGCC‑GATGGTGGAAATATCTCCAAACGGCAGCACCTTATTCCCCGGACCACAAACAGAAATTAAAATGGGGAGTGGAATAAAAATCAGGCTTG‑CGGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  2:12640/237‑1 (MQ=255)
                                                                                  aaGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  1:917009/239‑1 (MQ=255)
                                                                                  aaGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCCGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAg                                                                                                                                                           >  1:98704/1‑238 (MQ=255)
                                                                                  aaGGTGAGAAACCGTTTTGCACGTTGCAGTGAGACCGCCTGCGCCCAGAAGACGCC‑GAGGGTGGCAAGACCCCCAAACGGCCGCACCTGATTCCCCGGCACACAAACAGCAATTAAAATGGTGAGGGGCATAAAACTCAGGCTTC‑CCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGAACAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc                                                                                                                                                          <  2:542617/239‑1 (MQ=255)
                                                                                    ggTGCGGAACAGATTTCCACGATGAACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACACCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACggc                                                                                                                                                           >  2:827127/1‑234 (MQ=255)
                                                                                        cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCtt                                                                                                                                                    >  2:574384/1‑239 (MQ=255)
                                                                                                aTTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCACACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGTAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGCTCCTGCTTAGCGTTgg                                                                                                                                            >  1:837030/1‑239 (MQ=255)
                                                                                                aTTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATgg                                                                                                                                            >  1:840488/1‑239 (MQ=255)
                                                                                                     cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTACACGACTACGAGCCTGCTTAGCGCTGGGCGtt                                                                                                                                       >  2:59299/1‑239 (MQ=255)
                                                                                                     cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGtt                                                                                                                                       >  2:274896/1‑239 (MQ=255)
                                                                                                          tGCACGGCGCCCGCCATCGCCACAAAGAAGCC‑GATGGTGGCACAAGCGCCAAACGGCAGCACCGGATTCCCCGCCACACAAACAGCAATTAAAAGGGTGAGGGGGAAAAAAATCAGGCTTG‑CCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAc                                                                                                                                   <  2:370054/238‑1 (MQ=255)
                                                                                                          tGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc                                                                                                                                  >  2:1015779/1‑239 (MQ=255)
                                                                                                          tGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGCGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc                                                                                                                                  >  1:572547/1‑239 (MQ=255)
                                                                                                                  acccgccaccgccaCGAAAAAGCC‑GATGGGGGAAAAATCGCAAAACGGCAGCCCCTGATTCCCCGGCACCAAAACACAAATAAAAATGTGGAGTGGAAAAAAAACCAGGCTTG‑CCGATCCCA‑‑CCGCCTTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAGACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatga                                                                                                                          <  2:576144/237‑1 (MQ=255)
                                                                                                                  aaCCGCCATCCCCACGAAGAAGCC‑GATGGTGGCAAGATCGCAAAACGGCAGCACCTGATTCCCCGGCACAAAAACAGCAATAAAAAGGGTGGGTGGGATAAAAATCAGGCTTC‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGGCTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg                                                                                                                           <  2:385892/237‑1 (MQ=255)
                                                                                                                    ccGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgatg                                                                                                                        >  2:480226/1‑239 (MQ=255)
                                                                                                                    ccGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg                                                                                                                           >  1:1067802/1‑236 (MQ=255)
                                                                                                                       ccATCGCCACGAAGAAGCC‑GATGGTGGAAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGt                                                                                                                     <  1:274896/239‑1 (MQ=255)
                                                                                                                          tCGCCACGAAGAAGCC‑TATGGTGGCAAGATCGCCAACCGGCAGCACCTGATTTCCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAATTCAGGCTGG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTa                                                                                                                  <  1:1007932/239‑1 (MQ=255)
                                                                                                                              ccacaagaagGCGGATGGGGGAAAGACGGCAAACCGGCAGCGCCGGCTTCCCCGGCACAAAAACAGCAATTAAAATGGGGCGTGGAAAAAAAACCGGGCTTG‑CCGATGCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt                                                                                                                <  2:982565/234‑1 (MQ=255)
                                                                                                                                 gaagaaGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc                                                                                                           >  1:1243676/1‑239 (MQ=255)
                                                                                                                                  aagaggCC‑GATGGGGGCAAGACCGCCAAACGGCAGCACTTAATTACCCGGCACAAAAACAGCAATTAAAAGGGTGAGTGGGAAAAAAACCAGGCTTG‑CCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCg                                                                                                          <  1:685938/239‑1 (MQ=255)
                                                                                                                                  aagaagCC‑GATGGGGGAAAGACCGCAAAACGGAAGCCCCTAATTACCCGGCACAAAAACAGAAATAAAAATGGTGAGGGGGATAAAAACCAGGCTTG‑CCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc                                                                                                           <  2:840488/238‑1 (MQ=255)
                                                                                                                                             ggggggCAAAATCGCAAACCGGCAGCACCGGATTACCCGACCCACAAACAGCAATAAAAATGGGGAGTGGGAAAAAAACCAGGCTTG‑CCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTag                                                                                                 <  2:485580/234‑1 (MQ=255)
                                                                                                                                                       aTCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACt                                                                                       >  1:1108902/1‑238 (MQ=255)
                                                                                                                                                                 ggCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGtttt                                                                            >  1:171093/1‑239 (MQ=255)
                                                                                                                                                                          tgctgccccGGCCCAAAAAAAGAAATAAAAAGGGTGAGTGGTAAAAAAACCA‑GCTTG‑CC‑CGACACCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAGCAGGAACTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAg                                                                   <  2:1280890/233‑1 (MQ=255)
                                                                                                                                                                          gatttACCCGGAACACAAAAACAAATAAAAAGGGTGATGGGGATAAAAATCGGTCTGG‑CGGAT‑CC‑CCCCGCCTTATGTCCCAGCAGCACGGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAg                                                                   <  2:1109333/236‑1 (MQ=255)
                                                                                                                                                                          agATTCCCCGGCACAAAAACAACAAAAAAAAGGGTGAGGGGGATAAAAACCGGGCTGC‑CCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAg                                                                   <  2:863966/238‑1 (MQ=255)
                                                                                                                                                                                 ccGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc                                                                                                                                                                    <  2:728761/135‑1 (MQ=255)
                                                                                                                                                                                 ccGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc                                                                                                                                                                    >  1:728761/1‑135 (MQ=255)
                                                                                                                                                                                   ggCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATac                                                          >  1:538852/1‑239 (MQ=255)
                                                                                                                                                                                   ggCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATa                                                           >  2:794639/1‑238 (MQ=255)
                                                                                                                                                                                    gccaaaaaaaAGAAATAAAAATGGGGAGTGGGAAAAAATTCAGGTTTG‑CCAAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACCCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATac                                                          <  2:1387593/232‑1 (MQ=255)
                                                                                                                                                                                      acacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATaca                                                         >  2:1299551/1‑237 (MQ=255)
                                                                                                                                                                                               gCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACAt                                               >  2:9056/1‑238 (MQ=255)
                                                                                                                                                                                               gCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATc                                              >  1:1154135/1‑239 (MQ=255)
                                                                                                                                                                                                  aTTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTa                                           >  1:616922/1‑239 (MQ=255)
                                                                                                                                                                                                             gAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                                >  1:499013/1‑239 (MQ=255)
                                                                                                                                                                                                             gAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                                >  2:1157261/1‑239 (MQ=255)
                                                                                                                                                                                                             gAGTGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                                >  2:747828/1‑239 (MQ=255)
                                                                                                                                                                                                              agtggataaaaaaTGAGGTTGG‑CCGA‑ACC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGTCCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                                <  1:827127/230‑1 (MQ=255)
                                                                                                                                                                                                               ggtgagaaaaaaaCAGGCTTGCCCGATCCCA‑‑CCGCCGTATGACCCAGCAGCAAGCCCGGAACAAGGCCAATCAGGACCTCTTGACCGCCGAATTTCGCCTGTAAACGACTACGAGCCTGCTGAGCGATGGGCGTTAAACCATCCATGATGGTTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                                <  2:499013/231‑1 (MQ=255)
                                                                                                                                                                                                                tGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatga                                                                                                                          >  2:927771/1‑146 (MQ=255)
                                                                                                                                                                                                                tGGGATAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatga                                                                                                                          <  1:927771/146‑1 (MQ=255)
                                                                                                                                                                                                                  gaaaaaaaaCCAGGCTGG‑CCCATAC‑‑CCCCGCCGTATGTCCCAGCAGCACCGCCGGATCAAGCCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGcc                            <  2:490034/234‑1 (MQ=255)
                                                                                                                                                                                                                    aTAAAAATCAAACTTT‑CCCATTCC‑CACCGCCGTTGGTCCCAGCAGCACCCCCGGACAAAGTCCAATCCGTACCCCCTGACCGCCGACCTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCAGCCATGATGGGTTTAATCCCCCGTGGCATTAGCAGCATCCCGGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGcc                            <  2:956480/237‑1 (MQ=255)
                                                                                                                                                                                                                     tAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATa                        >  1:82096/1‑239 (MQ=255)
                                                                                                                                                                                                                     tAAAAATCAGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATa                        >  2:1288935/1‑239 (MQ=255)
                                                                                                                                                                                                                             aGGCTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcc                 >  2:685603/1‑238 (MQ=255)
                                                                                                                                                                                                                                cTTG‑CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcccc               <  1:1157261/237‑1 (MQ=255)
                                                                                                                                                                                                                                     ccGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATccca         >  1:1227415/1‑239 (MQ=255)
                                                                                                                                                                                                                                      cGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACaa        <  1:484996/239‑1 (MQ=255)
                                                                                                                                                                                                                                        cgctccccccGCCGTATGTCCCAGCCGCAGCGCCGGATCAAGGCCAATCGGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACaa        <  2:77518/233‑1 (MQ=255)
                                                                                                                                                                                                                                              ccccGCCTTAATCCCCAGCAGCAACGCCGGCTCAAGGCCAATCAGCATCCCCTGACCGCCGAACTGCGCCTGAAAACGACTACGAGCCTGCTTATCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGAATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCa  <  1:574384/239‑1 (MQ=255)
                                                                                                                                                                                                                                              ||                                                                                                                                                                                                                                             
ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCC‑GATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTG‑CCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCA  >  NC_000913/2173125‑2173599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A