Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F9 I0 R1 89 94.4 2603848 74.4% 1937262 227.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,173,3610C.83.9% 175.9 / 19.1 56pseudogene (2/442 nt)gatCpseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base C (6/3);  new base . (41/6);  total (47/9)
Fisher's exact test for biased strand distribution p-value = 1.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.
*NC_0009132,173,3620C.84.2% 173.8 / 16.0 56pseudogene (1/442 nt)gatCpseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base C (5/3);  new base . (41/6);  total (47/9)
Fisher's exact test for biased strand distribution p-value = 1.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

TAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACC  >  NC_000913/2173127‑2173597
                                                                                                                                                                                                                                                   ||                                                                                                                                                                                                                                            
tAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGAAaccaccgcc                                                                                                                                                                                                                                           >  1:186470/1‑236 (MQ=255)
  gccgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGTTAAAAATCAGGCTTGCCGCTaccaccgccgt                                                                                                                                                                                                                                         >  1:1045686/1‑234 (MQ=255)
       cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACCC‑AAACAG‑CAATTAAAATGGTGAGGGGGTTAAAAATCAGGCTTGCCGAAACCAcgcccgt                                                                                                                                                                                                                                         >  1:1211688/1‑236 (MQ=255)
               tgtgCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTTCCGAAAC‑‑CCCCGCCGTATGTCCCagcagc                                                                                                                                                                                                                          >  2:880455/1‑239 (MQ=255)
                         aaTATTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACCCCCGAGTTTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAt                                                                                                                                                                                                                <  1:149893/239‑1 (MQ=255)
                                tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATAC‑‑CCCCGCCGGTTGTCCCAGCAGCAAGGCCgcgccaagccc                                                                                                                                                                                                         >  1:241911/1‑229 (MQ=255)
                                  cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGAAGCAACGCCGGATCAAGGCCa                                                                                                                                                                                                        >  1:282561/1‑238 (MQ=255)
                                       cgccccACAGGGTGATTCCCATAATGATGACCCCCGAGATTAAGGTGCG‑‑‑‑‑AAACAGATTCCCACGATGACCGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAg                                                                                                                                                                                                   <  1:969122/234‑1 (MQ=255)
                                                   tGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGAAACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑cc                                                                                                                                                                                      >  1:491165/1‑238 (MQ=255)
                                                    gATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACCC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCG‑TACC‑CACCGCCGCATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑ccg                                                                                                                                                                                     >  1:871493/1‑238 (MQ=255)
                                                    gATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGCAAAGCCGGCTCAAGGCCAAACAGGAACCCCTGaaca                                                                                                                                                                                      >  2:879099/1‑235 (MQ=255)
                                                     aTGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑ccgcc                                                                                                                                                                                   >  1:4443/1‑239 (MQ=255)
                                                      tGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTccctgtacctt                                                                                                                                                                                   >  1:142647/1‑230 (MQ=255)
                                                      tGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACCCCTAA‑ccgccg                                                                                                                                                                                  >  1:332718/1‑239 (MQ=255)
                                                      tGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGCATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAAGTCCGTA‑cccccg                                                                                                                                                                                  >  1:236447/1‑239 (MQ=255)
                                                           aTAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACGG‑CACTTAAAATGGTGCGTGGGCTAAAAATCAGCCTTCCCGA‑ACC‑CCCCGCCGATGGTCCAGGCAGCAAAGCCGGATCGAGGCCAACCAGAAAACCCTAC‑CCCCCGaaat                                                                                                                                                                              >  2:934915/1‑236 (MQ=255)
                                                           aTAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTAA‑CCCCCGAACt                                                                                                                                                                              >  1:328510/1‑238 (MQ=255)
                                                             aaTGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTc                                                                                                                                                                            >  1:250114/1‑238 (MQ=255)
                                                                  tgaCACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGC‑CACAAAACAG‑AAATTAAAATGGTGAGGGGGATAAAAATCAGGCTTCCCGATACCACCC‑‑CCGTATGCCCCAGACGCAAGCCCGAAACAGGACCACT‑ACGAACTCCTAAGCCCCCGACCCTCGCCTga                                                                                                                                                                      >  2:1238804/1‑238 (MQ=255)
                                                                   gaCACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTa                                                                                                                                                                     >  1:66222/1‑239 (MQ=255)
                                                                        ccGCGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑CTTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGCGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGCAACGCCCGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACg                                                                                                                                                                 >  1:81862/1‑238 (MQ=255)
                                                                                      cG‑‑‑‑‑GAACCGATTTCCACGATGCACGGAGACCGCCCTCGACACGAAGAAGACGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCGCCC‑AAACAG‑CCATTACAATGGAGCGTGGGGTAAAAATCCGGCTTGTCGCTACCA‑‑CCGCCGATTGTCCCAGAGGCAAAGCCGGTTCAAGGCCAATATGGAACTCCTGA‑CCGCCGACATTTGCCTGTACACGACCAcacacctcctt                                                                                                                                                  >  2:224773/1‑229 (MQ=255)
                                                                                      cG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCCCAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGCTCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCCCCTGAAAACACCTACGAAccgtcct                                                                                                                                                  >  2:1090771/1‑234 (MQ=255)
                                                                                                 agtttcccACGATCCACGGCGCCCGCCATCGCCACGAAGAAGCCGATGGT‑GGAAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAA‑AAACAG‑CAATTAAAAGGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt                                                                                                                                            <  1:1090771/233‑1 (MQ=255)
                                                                                                          cGACGCGCGGCGCCCGCCCCTCCCAAGAAAAAGCCGACGGTGGGCAGAATCGAGAAACGG‑AGCTCATGAATTCCCCGCCCAAC‑AAACAA‑AATTTAAATGGGGGGGTGGGAAAAAAACCGGGCTGCGCGTTAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCAAATCCGGAACTCCTGA‑CCGCCGATCTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTa                                                                                                                                    <  2:949782/239‑1 (MQ=255)
                                                                                                             tGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGC‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGCGAGTGGGATAAAAATCAGGCTTGCCGCAACCA‑‑CCGACGTATGTCCACGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCCCCGAACTCCGCCCGTAAACGACGAAGAGCCGCCTTAGCGAGGGGGGTAAAAca                                                                                                                                >  2:686013/1‑238 (MQ=255)
                                                                                                               cACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcca                                                                                                                               >  1:1040657/1‑238 (MQ=255)
                                                                                                                    cGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg                                                                                                                         >  1:895065/1‑239 (MQ=255)
                                                                                                                              cGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTaa                                                                                                               >  1:281528/1‑239 (MQ=255)
                                                                                                                                   cGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc                                                                                                           >  1:71704/1‑238 (MQ=255)
                                                                                                                                           ccGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGGTAAACCATCCAGGATGGGTTTAATAACCCGGGGCAt                                                                                                  >  2:981990/1‑239 (MQ=255)
                                                                                                                                             ggtggggggCAAGACCGCAAAACGGCAGCCCCGT‑ATTACCCGGCACAA‑AAAAAG‑CAATTAAAATGGGGAGTGGGATAAAAAGCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCa                                                                                                   <  1:156374/230‑1 (MQ=255)
                                                                                                                                                ggt‑ggCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGCTGGGCGTTAAACCATCCATTCTGGGTTTAATCACCCGTGGCATTagca                                                                                             >  1:599567/1‑239 (MQ=255)
                                                                                                                                                              ccAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc                                                                                                                                                                                                                          >  2:93110/1‑102 (MQ=255)
                                                                                                                                                              ccAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc                                                                                                                                                                                                                          <  1:93110/102‑1 (MQ=255)
                                                                                                                                                                         caCCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTAcc                                                                      >  1:815209/1‑238 (MQ=255)
                                                                                                                                                                           ccTG‑ATTCCCCGGACCAA‑AAAAAC‑AAATAAAAATGGTGGGGGGAAAAAAAATCGGGCTTGCCGA‑ACC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACCCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGcc                                                                   <  1:981990/239‑1 (MQ=255)
                                                                                                                                                                                    cccGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCACCATCACTGCCGCCGTTTTTACCGCCAGCTGCaa                                                           >  1:825902/1‑239 (MQ=255)
                                                                                                                                                                                       ggCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCAGGATGGGTTTAATCACCCGTGGCTTTAGCAGCATCACTGCCCCCGTTTTTACCGCCAGCTGCAATac                                                        >  1:22748/1‑239 (MQ=255)
                                                                                                                                                                                         ggcaaaaaaCAGACAATTAAAAGGGTGGGTGGAATAAAAACCAGTCTGCCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATac                                                        <  1:427962/233‑1 (MQ=255)
                                                                                                                                                                                         cacac‑aAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTTTAAACGACTACCAGCCTGCTTACCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCTTGGCATTAGCCGCCGCAATGCCCCCATTTTTACCGCCACATGCaaaccc                                                       >  2:544156/1‑234 (MQ=255)
                                                                                                                                                                                         cacac‑aAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACCGCCGCCGTTTTTACCCCCACCTGCaaacaa                                                       >  2:758736/1‑234 (MQ=255)
                                                                                                                                                                                            ac‑aAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGCTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTTA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCtt                                                   >  1:1020658/1‑239 (MQ=255)
                                                                                                                                                                                               aaaCAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCACCTGCAATACACCTTTg                                                 >  1:304835/1‑239 (MQ=255)
                                                                                                                                                                                                    g‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATa                                                         >  1:149089/1‑226 (MQ=255)
                                                                                                                                                                                                      cAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCg                                           >  1:586175/1‑239 (MQ=255)
                                                                                                                                                                                                        aTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACGCCCAGCTGCAATACACCTTTGACATCGTa                                         >  1:797362/1‑239 (MQ=255)
                                                                                                                                                                                                        aTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTa                                         >  1:479582/1‑239 (MQ=255)
                                                                                                                                                                                                        aTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCCCCGTTTTTACCGCCACCTGCAATACACCTTTGACATCgca                                         >  1:75628/1‑237 (MQ=255)
                                                                                                                                                                                                             aaTGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAAccc                                     >  1:721231/1‑238 (MQ=255)
                                                                                                                                                                                                                ggTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGAc                                               >  1:6969/1‑225 (MQ=255)
                                                                                                                                                                                                                    aGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGAt                             >  1:1023423/1‑239 (MQ=255)
                                                                                                                                                                                                                    aGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAAGGGCGCTAAACCATCCATGATGGGTTTAATCACCCGTGGAATTACCAGCATCCCTTCCGCCGCTTTTACCGCCAGCCGCAAAACCCCTTTGAAAACGAAACCcccggg                                >  2:1057523/1‑234 (MQ=255)
                                                                                                                                                                                                                    aGTGGAAAAAAAACCGGGCTTGCCGAT‑CC‑CCCCGCCGTATGTCCCAGAAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                              <  1:879099/238‑1 (MQ=255)
                                                                                                                                                                                                                           tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGCGGATGCCGCTa                      >  1:419317/1‑239 (MQ=255)
                                                                                                                                                                                                                           tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCAAGGATGCCGTTa                      >  1:413530/1‑239 (MQ=255)
                                                                                                                                                                                                                                   aGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg                                                                                                                                              >  1:162066/1‑111 (MQ=255)
                                                                                                                                                                                                                                         gCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATcac        >  1:936852/1‑239 (MQ=255)
                                                                                                                                                                                                                                         gCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCCAGGATGCCGATAATCAGCCCCATcac        >  1:120666/1‑239 (MQ=255)
                                                                                                                                                                                                                                                 ccccccGCCGTATGCCCCGGCGACAACCCCGGATAAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCCCCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAAcc  <  1:263508/237‑1 (MQ=255)
                                                                                                                                                                                                                                                   ||                                                                                                                                                                                                                                            
TAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACC  >  NC_000913/2173127‑2173597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A