Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F9 I0 R1 83 124.0 2465218 96.8% 2386331 230.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,173,3610C.96.7% 385.6 / 2.7 90pseudogene (2/442 nt)gatCpseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base . (57/30);  total (58/32)
Fisher's exact test for biased strand distribution p-value = 2.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.
*NC_0009132,173,3620C.96.7% 384.8 / ‑0.9 90pseudogene (1/442 nt)gatCpseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base C (0/2);  new base . (57/30);  total (58/32)
Fisher's exact test for biased strand distribution p-value = 1.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAA  >  NC_000913/2173125‑2173593
                                                                                                                                                                                                                                               ||                                                                                                                                                                                                                                        
aTTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccac                                                                                                                                                                                                                                           <  1:1010378/237‑1 (MQ=255)
aTTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGGGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCCCGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccaccg                                                                                                                                                                                                                                         <  1:738641/239‑2 (MQ=255)
      cgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccaccgccgta                                                                                                                                                                                                                                    <  1:377512/238‑7 (MQ=255)
         cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGt                                                                                                                                                                                                                               >  1:95412/1‑238 (MQ=255)
            ttggtggtgCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTAATAATGATGCCCCCCGAGATTAAGGTGCGAAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTccc                                                                                                                                                                                                                            <  1:19600/232‑1 (MQ=255)
                  gtgCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAgcagca                                                                                                                                                                                                                     >  1:1039245/1‑239 (MQ=255)
                  gtgAAACCCAAGAGTTGGCGTCGCGATCAACAGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGCGGAACAGATTTCCACGCTGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCAAAAAAACAGAAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc                                                                                                                                                                                                                      <  1:690365/238‑1 (MQ=255)
                             tAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGAGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCa                                                                                                                                                                                                          >  1:667736/1‑239 (MQ=255)
                                  tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc                                                                                                                                                                                                     >  1:933513/1‑239 (MQ=255)
                                  tGCGTCGCGATCCACAGGGCGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGACCAAGGcc                                                                                                                                                                                                     >  2:798316/1‑239 (MQ=255)
                                  tGCGTCGCGATCCACAGGGCGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACAGCCATCGCCACGAAGAAGCCGATGATGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAACCAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGc                                                                                                                                                                                                      >  1:1181930/1‑238 (MQ=255)
                                    cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCaa                                                                                                                                                                                                   >  1:215538/1‑239 (MQ=255)
                                    cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCaa                                                                                                                                                                                                   >  1:180056/1‑239 (MQ=255)
                                       cgcgATCCACAGGGTGAGTCTAATAATGAGGGCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCCGGGCGACCGCCAACGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATc                                                                                                                                                                                                 <  2:519940/238‑1 (MQ=255)
                                        gcgACCCACAGGGTGATGCCCATAATGATCACCCCCGAGATGAAGGTGAGGACCAGGTTCCCACGAGGCACGGCGACCGCCAGCGCCACGAAGAAGCCGATGGGGGCAAGATCGCAAAA‑CGGCAGCACCT‑GATTACCCGCCACACAAACAGCAATTAAAA‑TGGGGAGGGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAg                                                                                                                                                                                               <  2:1106877/239‑1 (MQ=255)
                                         gtaTCCTCAGGGGGATGCTCATAATGAGGCCACCCGAGATTAAGGTGCGGAACAGATTGCCACGATGCCCGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAg                                                                                                                                                                                               <  2:572473/236‑1 (MQ=255)
                                                      gATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccg                                                                                                                                                                                  >  1:227327/1‑238 (MQ=255)
                                                      gATGCTCATAATGATGACACACGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAacg                                                                                                                                                                                  >  2:1019556/1‑238 (MQ=255)
                                                       aTGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGCACTCCTGAccgcc                                                                                                                                                                                >  1:839955/1‑239 (MQ=255)
                                                        tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGGTGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAcccccg                                                                                                                                                                               >  2:513009/1‑239 (MQ=255)
                                                        tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg                                                                                                                                                                               >  2:930849/1‑239 (MQ=255)
                                                        tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg                                                                                                                                                                               >  1:1203156/1‑239 (MQ=255)
                                                        tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg                                                                                                                                                                               >  1:50719/1‑239 (MQ=255)
                                                        tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg                                                                                                                                                                               >  1:643835/1‑239 (MQ=255)
                                                             aTAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACt                                                                                                                                                                           >  1:581566/1‑238 (MQ=255)
                                                             aTAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACt                                                                                                                                                                           >  1:496952/1‑238 (MQ=255)
                                                                     gaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTa                                                                                                                                                                 >  2:879207/1‑239 (MQ=255)
                                                                     gaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTa                                                                                                                                                                 >  2:381323/1‑239 (MQ=255)
                                                                       cacCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACAGCCGAACT‑TCGCCTGTaa                                                                                                                                                                >  1:311670/1‑238 (MQ=255)
                                                                        ccccGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAAc                                                                                                                                                              <  1:817609/238‑1 (MQ=255)
                                                                        ccccGAGATAAGGGTGCGGAACAGATTTCCACGATGCGCGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGAATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAAc                                                                                                                                                              <  1:780089/238‑1 (MQ=255)
                                                                         cccGAGATTAAGGTGCGTATCAGATTTCCACGATGCACGGCGACCGCCATCGCTACGAAGAAGCCGCTGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTAAAAGGCACACAAAAAGCAATTACAT‑TGGTGAGTGGGATACAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCATCAATGCCGGATCCACACCAATCAGACACTCACGACAACTGAACT‑CGTCCTGTaacgc                                                                                                                                                             >  2:440033/1‑236 (MQ=255)
                                                                         cccGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACg                                                                                                                                                             >  1:622084/1‑239 (MQ=255)
                                                                                  aaGGTGCGGAACAGATTTCCACGATGCCCGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGc                                                                                                                                                    <  1:1167437/239‑1 (MQ=255)
                                                                                  aaGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCCCCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGc                                                                                                                                                    <  1:368886/239‑1 (MQ=255)
                                                                                  aaGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGc                                                                                                                                                    <  1:1009512/239‑1 (MQ=255)
                                                                                  aaGGGGCGGAAAAGATTCCCACAATGCCCGGCCACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAC‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGc                                                                                                                                                    <  1:525432/239‑1 (MQ=255)
                                                                                    ggTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGcc                                                                                                                                                   >  1:767596/1‑238 (MQ=255)
                                                                                        cggccgagttttCCACGATGCACGGCGCCCGTCATCGCCACGAAAAAGCCGATGGCGGCAAGATCGCCAAA‑CGACAGCACCT‑CATTACCTGCCACACAAACAGCAATTGAAC‑TGTGTAGTGTCTTAAAAATCAGTCTTCCCGATAC‑‑CTGCGCCGTATGTCCCAGCAGCAACGCCGGATCAACCCCAAACAGGAACTCCTGCCCGCACCACC‑TCGCCTGTCAACCACTACGCGCCCGcc                                                                                                                                               >  2:218033/10‑237 (MQ=255)
                                                                                        cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAgg                                                                                                                                                                                              <  1:711772/192‑1 (MQ=255)
                                                                                        cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAgg                                                                                                                                                                                              >  2:711772/1‑192 (MQ=255)
                                                                                        cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCtt                                                                                                                                              >  2:195629/1‑239 (MQ=255)
                                                                                        cGGAACAGATTTCCACGATGCACGGCGACAGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCCACT‑GATTACCCGGCACACAAACCGCAATTAAAA‑TGGGGAGTGGGCTAAAAATCAGGCTTGCCCATACCA‑‑CCACCGTATGTCCCAGACGAAACGCCGGACCGAGGCCAATCAGGAACTCCTCACCGCACAACT‑TCGCCTGTAAACGACTACGAGCCTGCtt                                                                                                                                              >  2:630857/1‑239 (MQ=255)
                                                                                              aGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGAAAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt                                                                                                                                        <  1:105866/239‑1 (MQ=255)
                                                                                               gATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTaaa                                                                                                                                                               >  1:295680/1‑215 (MQ=255)
                                                                                                aTTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATgg                                                                                                                                      >  1:1201590/1‑239 (MQ=255)
                                                                                                aTTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTACCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATgg                                                                                                                                      >  1:192504/1‑239 (MQ=255)
                                                                                                 ttcccACGAGGCCCGGCGCCCGCAGTGCACACGAAGAAGCCGAGGGGGACAAGAGCGCAAAA‑CGCCAGCCCCT‑GATAACCCGGCACAAAAACAGCAATTAAAA‑GGGTGAGGGGGATAAAAATAAGGCTGGCCGAAACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt                                                                                                                                        <  2:1175439/233‑1 (MQ=255)
                                                                                                     cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGtt                                                                                                                                 >  1:925418/1‑239 (MQ=255)
                                                                                                          tGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc                                                                                                                            >  2:712316/1‑239 (MQ=255)
                                                                                                          tGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc                                                                                                                            >  2:1198640/1‑239 (MQ=255)
                                                                                                              cGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGCGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccgtcc                                                                                                                        >  1:743606/1‑239 (MQ=255)
                                                                                                                  gACCCCCACCGCCACGAAGAAGCCGATGGTGGAAAGATCACCAAA‑CGGCGGCCCCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGAAAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatga                                                                                                                    <  2:332731/239‑1 (MQ=255)
                                                                                                                   ccccccAGCGCCACGAAGAAGCCGAGGGTGGCAAGATCGCCAAA‑CGGCAGCACTT‑GATTCCCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTGGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgat                                                                                                                   <  2:1203156/235‑1 (MQ=255)
                                                                                                                    ccGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgatg                                                                                                                  >  2:438406/1‑239 (MQ=255)
                                                                                                                    ccGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgatg                                                                                                                  >  1:1131220/1‑239 (MQ=255)
                                                                                                                                   tgaagCCGATGGTGGAAAGATCGCCAAA‑CGCCAGCCCCG‑GATTCCCCGGCACACAAACAGCAATGAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGt                                                                                                   <  1:652848/238‑1 (MQ=255)
                                                                                                                                   agcagcgaaTGGTGGAAAGAACGCAACA‑CGGCAACCCCT‑GATTCCCCGGCACACAAACAGCAATTAAAA‑TGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc                                                                                                     <  2:1071924/229‑1 (MQ=255)
                                                                                                                                   agagcccGATGGGGGAAAGAACGCCAAA‑CGGC‑GCCCCTGGATTCCCCGGCACACAAACAGAAATTAAAA‑GGTTGGGTGGGAAAAAAATCAGTCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc                                                                                                     <  2:496952/232‑1 (MQ=255)
                                                                                                                                         cGATGGTGGCAAGATCGCCAAA‑CGCCAGCACCT‑GATTACCCGGCACACAAACAGAAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCAtt                                                                                             <  1:674494/239‑1 (MQ=255)
                                                                                                                                           aTGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTa                                                                                            >  1:967763/1‑238 (MQ=255)
                                                                                                                                                ggCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAgcagca                                                                                      >  2:593802/1‑239 (MQ=255)
                                                                                                                                                  cAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATc                                                                                    >  2:987696/1‑239 (MQ=255)
                                                                                                                                                  cAAGAT‑GCCAAACCGGCGGCACGG‑GATTGCCGGCCACGAAGACAGCAAGTAGAA‑GGGTGAGGGGTAAAAAAACCAGGCTTGCGGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCAt                                                                                     <  2:622084/238‑1 (MQ=255)
                                                                                                                                                        cGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGCTGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTgcc                                                                              >  1:53972/1‑239 (MQ=255)
                                                                                                                                                        cGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTgcc                                                                              >  1:1223571/1‑239 (MQ=255)
                                                                                                                                                         gCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTgcc                                                                              >  2:191478/1‑238 (MQ=255)
                                                                                                                                                          ccAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTgccg                                                                             >  1:1029388/1‑238 (MQ=255)
                                                                                                                                                                               taacccgCACATAAACCGCAATTAAAATTGGGGAG‑GGGAAAAAAATCAGGCTTGCTGATTCC‑CCCGACGGTATGTCCCAGCAGCAACGCCGAAAAAAGGCCAATAAGGAACCTGTGACCGCCGACCT‑TCCCCTGTAAGCGACTACGAGCCTGCTTAGCGCTGGGCGTTAAACCATCCATGATGGGTTTAACCACCCGGGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGc                                                            <  2:181048/231‑1 (MQ=255)
                                                                                                                                                                                 cccGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCaa                                                       >  1:1070721/1‑239 (MQ=255)
                                                                                                                                                                                  ccGGCACACAAACAGCAATTAAAA‑TGGTGGGTGGAATAAAAATCAGGCTTCCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAAt                                                      <  1:1040311/239‑1 (MQ=255)
                                                                                                                                                                                  ccGGCACAAAAAAAACAATAAAAA‑TGGTGAGTGGAATAAAAATCATGCTGACCGATACCA‑‑CCGCCGTAGGTCCCAGCAGCACCGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAAt                                                      <  2:1029388/239‑1 (MQ=255)
                                                                                                                                                                                   gggCACACAACCAGCAATAAAAA‑GGGGGGGTGGAATAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATa                                                     <  1:1105000/238‑1 (MQ=255)
                                                                                                                                                                                                            ggTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGa                             >  2:999953/1‑239 (MQ=255)
                                                                                                                                                                                                             gTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAg                            >  1:712780/1‑239 (MQ=255)
                                                                                                                                                                                                             gTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAg                            >  1:787922/1‑239 (MQ=255)
                                                                                                                                                                                                             gTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAg                            >  2:517365/1‑239 (MQ=255)
                                                                                                                                                                                                               gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAg                            >  2:627240/1‑237 (MQ=255)
                                                                                                                                                                                                               gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                          >  1:787709/1‑239 (MQ=255)
                                                                                                                                                                                                                agggggAAAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa                          <  1:443617/235‑1 (MQ=255)
                                                                                                                                                                                                                aGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAg                            >  2:262412/1‑236 (MQ=255)
                                                                                                                                                                                                                   gggATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGc                       <  1:593802/238‑1 (MQ=255)
                                                                                                                                                                                                                    ggATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGcc                      <  1:879207/238‑1 (MQ=255)
                                                                                                                                                                                                                    ggATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGcc                      <  1:381323/238‑1 (MQ=255)
                                                                                                                                                                                                                       tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATa                  >  2:709523/1‑239 (MQ=255)
                                                                                                                                                                                                                       tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATa                  >  1:689005/1‑239 (MQ=255)
                                                                                                                                                                                                                            aTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAg             <  1:930849/239‑1 (MQ=255)
                                                                                                                                                                                                                               aGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcc           >  1:85249/1‑238 (MQ=255)
                                                                                                                                                                                                                                ggCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGTCGGATCAAGCCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGATTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCACTACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGccc          >  2:1013388/1‑238 (MQ=255)
                                                                                                                                                                                                                                 gCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcccc         <  1:712316/238‑1 (MQ=255)
                                                                                                                                                                                                                                    tcggcgaaaccccccGCCGTATGTCCAAGCAGCAACGCCGGACCAAGGCCAATCAGGAACTCCGGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCa        <  2:1131220/227‑1 (MQ=255)
                                                                                                                                                                                                                                     gCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa                                                                                                                              >  2:324008/1‑117 (MQ=255)
                                                                                                                                                                                                                                     gCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa                                                                                                                              <  1:324008/117‑1 (MQ=255)
                                                                                                                                                                                                                                      ccGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATcaca   >  1:1007900/1‑239 (MQ=255)
                                                                                                                                                                                                                                          gacacccccGCCGTAGGTCCCAACAGCACCGCCGGATCAAGGCAAATCAGGAACTCCTGACCG‑CGAACTGTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCAGGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACaa  <  2:454145/233‑1 (MQ=255)
                                                                                                                                                                                                                                               ||                                                                                                                                                                                                                                        
ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAA‑CGGCAGCACCT‑GATTACCCGGCACACAAACAGCAATTAAAA‑TGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAA  >  NC_000913/2173125‑2173593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A