Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F13 I0 R1
|
125 |
11120.0 |
6942704 |
98.3% |
6824678 |
135.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
20.2% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 20.2%
| 159.9
/ 12.0
| 108 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (24/60); new base G (22/2); total (46/62) |
| Fisher's exact test for biased strand distribution p-value = 2.40e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
CTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAT > NZ_CP022686/3797348‑3797616
|
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCCACCCGGCGGC‑gggagttt > 3:462106/1‑139 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttagttt > 4:858727/1‑139 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAATTTCTGAGGACGCTTCTTCAAGGCACCCCGGCGGC‑gttagttt > 1:88241/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑ggtagttt > 2:508720/1‑137 (MQ=255)
ccGCTTTATGCAGGCGGTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTAt < 5:201260/138‑1 (MQ=255)
cGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTAtttt < 4:39933/140‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGtt < 3:629078/140‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGATTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCGTCTTAAAGGCAACCCGGCGGC‑GGTATTTATTTTAgg > 5:504155/1‑138 (MQ=255)
gTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGCTGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTAATTTTGGTTCTGA‑gg > 8:448368/1‑139 (MQ=255)
gTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCa < 6:346475/138‑1 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTTTTTTTTTTTGTTGTGA‑Gtt > 3:440009/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTTTTTTTTGGTGTCA‑Gtt > 3:431761/1‑140 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑Gt < 6:606463/138‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTg < 7:551828/140‑1 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTTTTTTTGGGTGTCA‑Gtt > 6:108688/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑Gtt > 2:42597/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGTTATTTTTTGTTCTGA‑Gtg > 1:218785/1‑137 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGGATTTTTTTTTTGTTATCA‑Gtt > 5:72308/1‑138 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGGTATTTTTGGGTCTCA‑GTTggagg > 4:598053/1‑137 (MQ=255)
gcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCTGCTCTAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGa < 1:238933/138‑1 (MQ=255)
gcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGa < 1:644080/138‑1 (MQ=255)
gagGTGATTAATAAATCTGAATTCCAGCTACTGCTTGGGTGTCATTAGTATAATCAGCTCTAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATaa < 7:85163/139‑1 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATaa < 1:876130/138‑1 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGTTTATTTTGGTTATAA‑GTTGGCTGATtaa > 1:321520/1‑138 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCATGGCAACCCGGCGGC‑GGTATGTATTTTTTGTTCTCA‑GTTGGCTGATtaatc > 6:211011/1‑136 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTATTTATTTTTGGGTCTCA‑GTTGGCGGATTAAACTc > 3:837974/1‑140 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCA‑GGTGGCGGTTAAAAc > 2:836577/1‑138 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTTGTTCTCA‑GTTGGCTGTTAAAACta > 6:304063/1‑137 (MQ=255)
aaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTTTTTTTGTGTCGAA‑GTTGGCTGGTAAAACTCACCACATa > 5:334348/1‑138 (MQ=255)
taaTTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCga < 4:670952/139‑1 (MQ=255)
ttCCAGCTTCTGCTTGGGTGTCATGAGTATAATCAGCTCATAGAAGCTGAAATTCTGATGACGCTTCTTCAAGTCAACCCTGCGGC‑GTTAGTTATTTATGGTTCTCA‑GTTGGCTGATAAATCTCACCAGATACTCgag < 5:321791/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCgag < 6:9050/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCgag < 5:80830/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCgag < 1:304152/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaa < 3:246229/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:635604/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:255233/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGGTATTTTTTGGTGTCA‑GGTGGGTGTTAAAACTCACCCGATTCGCGAGaa > 3:471181/1‑140 (MQ=255)
atCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGAGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:3174/139‑1 (MQ=255)
tCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaaa < 7:357020/140‑1 (MQ=255)
cctgCTACTGCTTGGGTGTCATGATTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCAGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:584855/135‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 8:167141/140‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 4:814446/140‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATCAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:497662/138‑1 (MQ=255)
ccAGCTACTGCTTGGGTGGCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 7:513861/140‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 8:631862/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 8:724482/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 6:56880/138‑1 (MQ=255)
tACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTTTTATTTTTTGGTGTGA‑GTTGGGTGATAAAACAGACCCCATACTGGAGaaaaaca > 1:49819/1‑135 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATTTTTTTTTTGTTCTGA‑GTTGGCGGATAAAACTAACCCCATACTAGAGAAAAAAAAaata > 5:154936/1‑138 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 5:797726/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTAGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 6:821964/138‑1 (MQ=255)
gggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTTGTTCGAA‑GGTGGCGGATAAAACTCACCAGTAACTCGAGAAAACAAATAtaac‑tac > 8:699694/1‑140 (MQ=255)
ggtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑Gt < 4:35586/139‑1 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGaa < 3:479955/120‑1 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAATTATTTTTTGTTGTCA‑GTTGGCTGGTAAAACTAGACAGATTATCGTGAAAACAAAAAAACC‑TACC‑Gttt > 8:119111/1‑139 (MQ=255)
cgTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTTATAAAACTCACCAGATACTCGAGAAAACAAATATCCC‑TACC‑GTTAACg < 6:205831/137‑1 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTGTCA‑TTTTGGTTATTAAAATCACCAGATAAAAGAGAAAAAAAATATAAA‑AACCGGTTAACGtgt > 1:723910/1‑136 (MQ=255)
aaaTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGt < 2:144782/137‑1 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCgg < 5:474641/138‑1 (MQ=255)
acAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCgg < 5:478434/137‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGt < 1:42597/138‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCGAGGCAACCCGGCGGC‑GTTATTTATTTTTGGTTGTGA‑TATGGGGGATTAAACACCCCAGATACTCGAAGAAACAAATATAAC‑AAAC‑GTTTAAGTTGTggggg > 1:143146/1‑136 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGtt < 6:481745/138‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGGTATTTTTGGTTGTCA‑GGTGGCTGATAAAACTCACCCGATACTCGAGAAAACAAATATACC‑TACC‑GTTCACGTTGTCGGGTccc > 8:562908/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGGTTTTTTTTGG‑TGGGA‑GGGGGGTGATTAAAAAGACCCCATACGCGAGAAAACAAAAAAAAC‑TACC‑CGTTACGTTGTggggtggc > 3:58095/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTATTTTTTGTTGTCA‑GTTGGGTGATAAAAATACCCACCAAAACGTAACAAAAAATATAAC‑AACC‑GTGAACGTGGTCGGGTcgc > 3:350595/1‑138 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTTGTTAGCA‑GGTGGCTGATAAAACTCACCAGATAATCGAGAAAACAAATATACA‑TTCA‑GGTTACGTTGTCGGTTacc > 8:623864/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGGTCTCA‑GTTGGCTGATTAAACTCAACAGATGCTCGAGAAAACAAATATACC‑TACC‑GTTTACGTTGTCgggtgcc > 8:623294/1‑135 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTTTTTTTTGGTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑GACC‑GTTAACGTTGTCGGGTcccc > 4:577058/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTATTTTTTGTTGTAA‑GTTTGCTTATAAAAATCAACAAAAACAAGAGAAAACAAAAATACC‑AACC‑GTTAACGTTGTCGGTTaccc > 3:858943/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTTTTTTGAATTTTGGTTTAT‑AAACTAACCAGATTAACGCGAAAAAAAAAATAAC‑TACC‑GTTAACGTTGTAGGGTgccc > 7:539126/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GGTAGTTATTTTTGGGTCTCA‑GTTGGGGGATAAAACTACCCACATAAACGAGAAAACAAATATAAC‑TACC‑GGTAACGTTGTCGGTTgcc > 2:528980/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGGTATGTTTGGTTCTAA‑GTTGGGGGATAAAACTGCACAGATACACGAGAAAACAAATATAAC‑AAAC‑CTTTACCTTGTAGGttagcc > 6:352810/1‑134 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGGTTTTTTTGGGTGTAA‑GGGGGCTGGTAAAACTGACCCGAGACGCGAGCTAACCAAAATAAC‑GTCC‑GTGTACGTTGTggggggccc > 2:329321/1‑132 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCATCCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCttt < 7:397664/140‑1 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGGTTTTTTTGGGTCTAA‑GTTGGGTGATAAAACTCCCCAGATACTCGAGCAAAACAATATACC‑TTAC‑GTTAAAGGTGTGGGGTcccca > 2:732011/1‑137 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGA‑GGTTGTTTTTTTTGGTTCTGA‑GTTTTGGGATAAAACTCCACAGCAACTCGCGCACAAAAATATTCC‑GACC‑GGTTACGTTGTGGGGTgcccg > 6:405939/1‑137 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTTGTTGTAA‑GTTGGCTGATAAAACTCCACAGCTACGCGAGAAAACAAATATACC‑TACC‑GTTAAAGTTGTCGGGTGCCCGTTAAGTGCg > 8:285913/1‑140 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGTTATTTTTGGTTATCA‑GTTGGCTGATAAAAATCACCAGATACACGAGAAAACAAATATACC‑AAAC‑CTTAACTTTGTCGGTTACCCGTTAAGtgcc > 3:205277/1‑137 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTATTTTTGGTTATCA‑GTTGGCGGATAAAACGCACCAGATACTCGAGAAAACAAATATACC‑GACC‑GTTAACGTTGTCGGTTGACCCTTCAGTCCg > 6:147724/1‑138 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTTGTATTTTTGGTTATAA‑GTTGGCTGATAAAACTCAACACCTACTCGAGAAAACAAATATAAC‑TACC‑GTTAACCTGGGCGGTTGACCATTGAGTCCg > 6:245194/1‑138 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCt < 7:394380/140‑1 (MQ=255)
tgatgaCGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAAtt < 4:640815/140‑1 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGCGGC‑GGTTTTTTTTTTTTGTTGTCA‑GTTGGCGGGTAAAAAACACCAGATACTCGAGAAAAAAAAAAAACCATCCC‑GTTAAC‑TTGTAGGGTCCCCCTTGAGTCCGGCACAAATTAACaa > 8:233968/1‑139 (MQ=255)
ttcAAGGCAACCCGGCGGC‑GTGAGTTATTTTTGGTTGTGA‑TTTGGGTGATAAAACTCACCAGATAAAAGAGAAAAAAAAAATACC‑TACC‑CTTAACGGTTTGGGTTCCCCATTGAGTCCGGCTCAAATTAACATAGAAACa > 8:345281/1‑140 (MQ=255)
aaGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAg < 1:209620/138‑1 (MQ=255)
ggggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATCCTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:516263/136‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAACCAGCATTTTTTGaa < 1:631728/138‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:556889/138‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:323606/138‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:783897/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:539126/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:650860/140‑1 (MQ=255)
gcggc‑gGTAGTTTTTTTTTGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:41713/140‑1 (MQ=255)
caggc‑gTTAGTTAATTTTGGTTCTCA‑GTTGGCTGTTAAAACTCACCAGATACTCGAGAAACCAAATATACC‑TACC‑GTTAACGTTGTTGGTTACCCTTTCAGTCCGTCTCAAATTACCATCGACACAGCATTTTTTGAAGc < 7:525889/138‑1 (MQ=255)
ggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATTCTCGAGATAAGAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 1:857216/138‑1 (MQ=255)
ggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:714242/138‑1 (MQ=255)
ggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAt < 4:880678/140‑1 (MQ=255)
ggc‑gTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAt < 3:376673/140‑1 (MQ=255)
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CTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCA‑GTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACC‑TACC‑GTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAT > NZ_CP022686/3797348‑3797616
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
