Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F36 I0 R1
|
151 |
8012.5 |
7490824 |
98.1% |
7348498 |
134.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
12.0% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 12.0%
| 170.5
/ 2.1
| 106 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (26/64); new base G (13/3); total (39/67) |
| Fisher's exact test for biased strand distribution p-value = 1.15e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 119 total aligned reads displayed.
CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797345‑3797618
|
cAGCTCCCGCTTTATGCAGTCGTTGCTGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGTGTGTCTTGAGTATTATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCATCCCGGCGGCgttag < 7:193226/140‑1 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtag‑t > 1:893614/1‑138 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCTTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttag‑ttt > 2:119797/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCgtgtgttt > 5:112454/1‑132 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCgtttg‑ttt > 5:366389/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttat‑tta > 4:799933/1‑138 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtat‑ttt > 3:855771/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtag‑ttt > 5:554928/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCCCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCgtttg‑ttt > 5:196281/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGGCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCggtagatt > 3:355692/1‑135 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGACATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggttg‑ttt > 5:845126/1‑137 (MQ=255)
cGCTTTATGCAGTCGTTGCAGCAGGCGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGGCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTAtttt < 8:520688/140‑1 (MQ=255)
tttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTG‑tttttttt > 1:457353/1‑138 (MQ=255)
tttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTAAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGTCGTTAT‑GTtttttt > 1:712458/1‑138 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAACGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTgg < 2:881064/138‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGATTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTgg < 3:529213/138‑1 (MQ=255)
tGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTtct > 8:235460/1‑140 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTAGAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCACGGCGGCGTTAGTTTATTTTTgttg > 6:894236/1‑135 (MQ=255)
aGTCGTTGCAGGAGGCTCTTAATAAAAATGAATTCCAGCTTCTGCTTGGGTGTCATGAGTATAATCAGCTCACAGACGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑GTATTTTTGGTtctc < 5:770946/138‑1 (MQ=255)
cggtGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGGCATGAGTATAATCAGCTCAAAGCAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGt < 5:224750/135‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGt < 6:40296/138‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTT‑TTATTTTTGGTTATCatt > 5:470754/1‑136 (MQ=255)
agcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTTGTTGTCAGTTgggag > 2:741019/1‑135 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATaa < 6:442940/138‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCTTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑TTTTTTTTGGGTCTCAGTTGGGTGCTaaaa > 6:332074/1‑138 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCGGTTG‑GTAGTGTTGGGTCGCCGTTGGGTGAGTAAAc > 6:646880/1‑138 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCGTTAG‑TTTTTTTTGGTTCTAAGTTGGCTGATAAACCTc > 2:644623/1‑138 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTG‑TTTTTTTTGGTTCTCAGTTGGCTGATaaaaaga > 3:577826/1‑135 (MQ=255)
aaataaAAATGAATGCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCa < 3:801519/137‑1 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTG‑GTTTTTTTGGTTATGAGTTGGGGGGTAAAACTAACCAGATAc > 4:170005/1‑138 (MQ=255)
gAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTTTTTTTTGTTGTCAGTTGGCTGATAAAACTCACCAGATAATc > 2:179534/1‑138 (MQ=255)
ttCCAGCTCCTGCTTGGGTTTCAAGAGTAAAATCTTCTCCAAGAACCCGAAATTCTGATGACGCTTCTTCAACCCAACCCGGCTTCGTTAG‑TTATCTTTGGTTCTCAGTATGCTGATAAAACTCACCAGATACACGA‑Gaa < 7:844950/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGTAGCTGAAATTCTGATGACGCTTCTTCTAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCga‑g < 2:456976/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCga‑g < 5:620951/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCga‑g < 6:146339/138‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑Gaaaa < 7:122169/140‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑Gaaaa < 8:409291/140‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGATCAAAGAAGCTGATATTCTGATGACGCTTCTTCAAGGCTACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑Gaa < 5:608143/138‑1 (MQ=255)
cgCTACTGCTTGGGTGTCAGGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCGCAGTTGGCTGATAAAACTCACCAGATACTCGA‑Gaaaa < 6:378590/137‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACa < 8:734392/140‑1 (MQ=255)
gCTACTGCTT‑GGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACa < 5:676298/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACa < 5:438276/138‑1 (MQ=255)
cTTGTGTGTCATGAGTATAATCACAGCAACGATGCAGAAATTCTGATGACGCTTCTTCAAGGCAACCCGCCGGCGTTAG‑TTATTATTGGATCTCAGTTGGCTTATAAAACTCACCAGATACTCGA‑GAAAACAAAtataac < 7:657063/140‑3 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGTCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAAtata < 1:796682/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAAtata < 1:194218/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAAtata < 6:550952/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAAtata < 5:382564/138‑1 (MQ=255)
ggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAT‑GTATTTTTTGTTGTCAGATTGCTGATCAAAAAGACCCAATACTACA‑GAAAACAAATAaaacta > 1:977234/1‑138 (MQ=255)
tgtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTGTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATAtacctac‑c > 4:177515/1‑138 (MQ=255)
tgtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATAtacctac‑c < 6:724409/138‑1 (MQ=255)
tgtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATAtacctac‑c < 6:509361/138‑1 (MQ=255)
gtCATGAGTATTATCAGCTCAAAGAAGGTGAAATTCTGATTACGCTTCTTCATGGCAACCCGGCGGCGTTAG‑TTTTTTTTTGTTCTGAGTTGGCTGATATAACTCACCAGATACGCGA‑GAAATCATTTATACCTAC‑CGtt < 7:360227/140‑1 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTTGTTCTGAGTTGGCTGATAAAACTCACCAGAATCTAGA‑GAAAACAAAAATACCTAC‑Cggtt > 1:732629/1‑135 (MQ=255)
aTGAGTATAATAAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGTCAACCCGGCGGCGTTAG‑TTATTTTTGGGTCTCAGTTGGGTGATAAAACTCACCAGATACTCGA‑GAACACAAATATACCTAC‑CGTTAAc < 8:677281/140‑1 (MQ=255)
gAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTTGTTGTCAGTTGGGGGATAAAACACACCAGATACTAGA‑GAAAAAAAATATAACTAA‑CGTTaaa > 6:355260/1‑137 (MQ=255)
gAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTGAGTTGGCTGATAAAAAGCACCAGATAATCGA‑TAAAACAAAAAAACCTAC‑CGTTaaa > 2:733119/1‑137 (MQ=255)
aGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACg < 6:540267/138‑1 (MQ=255)
aGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACg < 4:946043/138‑1 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGAT‑TTTTTTTTTGTTCTCAGTTTGGTGTTAAAACACACCAGATAAGCGA‑GAAAACAAATAAACCTAC‑CCTTAACGTTGt > 6:674244/1‑138 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCg < 2:872756/138‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCg < 2:666703/138‑1 (MQ=255)
tCAGCGCAAAGAAGCTGAAATTCTGATGTCGCTTCTTCAAGGCATCCCGGCGGCGTTAG‑TTATTTTTGGTGCTCAGTTGGCTGATAAAACTCACCAGATACTCGC‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCgg < 2:925218/138‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑GTTTTTTTTGTTGTGAGGTGGGGGGTAAAACTCACCCGCTACTAGC‑TCAAACAAATATAACAAA‑CGTTTAAGGTGTGGGGTccc > 7:651604/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTTTTTTTGGTTGTAAGTTGGGTGGTTAAACTCACCAGCTACTCGA‑GAAAACAAATATACCAAC‑CGTTAACGGTGTGGGGTgccc > 8:3337/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTG‑TTATTTTTGGTTGTCATTTTGCTGTTAAAACTCACCAGATACTAGA‑GAAAAAAAATATACCAAC‑CGTTTACGTTGTAGGTTccc > 5:718004/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTG‑GTTTTTTTGGTTGTCAGTTGGCTGATAAAACTGACCAGATACTCGA‑GAAAACAAATATACCTTA‑CGTTAACGTTGTCGGTTacc > 4:402184/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑GTATTTTTGGTTCTCAGTTGGGTGATAAAACGCACCAGCTACTCGG‑GCAAACAAATATACCTAC‑CGTTAACGTTGTGGGTTgcc > 4:408332/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑GTATTTTTGGTTCACAGTTGGCTGTTAAAACGCACCAGCAAATAGA‑GAAAACAAATATAACTAC‑CGTTAACGTTGTCGGTTccc > 4:526124/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCACGGCAACCCGGCGGCGTTTG‑GGTTTTTTTGGTGTGAGTGGGCTGGTAAAACCCACCCGCTACGCGA‑GAAAACAAATATTCCGACACGTTACGGTTGGGGGTGccc > 5:182033/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTGTCAGTTGGCTGATTAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTaccc > 1:565787/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAG‑TTATTTTTGGTTCTCAGTTGGGTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTcccc > 4:852356/1‑138 (MQ=255)
acacaagATGAAATTCTGATGACGCTGCATCAAGGCAACAAGGAGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGCTTCAACTCACCAGATACTCGA‑GAAAACAATTATACCTAC‑AGTTAACGTTGTCGGTTCCCCttt < 8:231381/136‑1 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑TTATTTTTGGTTGTGAGTTGGCTGATAAAACACACCACATACTCGAGGAAAACAAA‑AAACCTAA‑CGGTTAAGGTGTCGGGTcccca > 6:757174/1‑137 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTAAAGGCAACCCGGCGGCGTTAG‑TTTTTTTTTGTTGTCTTTTGGGTGTTAAAACAAAACATATAATAGT‑TAAAAAAAATATACCTAA‑CTTTAAAGTTGTTGGTTtcccg > 2:171427/1‑137 (MQ=255)
agaagCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTG‑TTATTTTTGGGTCGAAGTTGGGTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTTACGTTGTCGGGTCCCCttt > 4:128644/1‑138 (MQ=255)
tGAAATTCTGATGACTCTTCTTCAAGGCAACCCGTCGGCGTTAG‑TTATTTTTGGTTCTCAGTTCGCTGATATACCTCACCAGATCCTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTcc < 6:4495/138‑1 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTcc < 6:96335/138‑1 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTcc < 4:934225/138‑1 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTcc < 6:757551/138‑1 (MQ=255)
tGAAATTCTGAAGACGCTTCTTCAAGGCAACCCGGCGTCGGTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTcctg < 8:214530/140‑3 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTT‑TTTTTTTTGGTTCTCAATTGGGTGATAAAAAACACCACAAACACGA‑CCAAACAAAATAAACAAC‑CCTTAAAGTTGTCGGTTACCCATTCactacg > 6:12947/1‑133 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTTATTTTGGTTCTCAGTTGGCGGATAAAACTCACCAGCTTATAGA‑GAAAACAAATATACCGAC‑CGTTTACGTTGTCGGTTGCCCTTTCacggcg > 4:83224/1‑133 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTTGTTGTAAGTTGGCGGAATAAAAACACAACCTAATCGA‑GAAAACAAAAATAACTAC‑AGGTTACGGTGTAGGGTACCCATTCAGGccc > 6:394667/1‑137 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGGTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 5:656547/138‑1 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGAGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCTGTTCCCCTTTCAGTCCgg < 6:113327/138‑1 (MQ=255)
tgatgaCGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAACACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCGCTTTCAGTCCGGCTCAAAtt < 8:571322/140‑1 (MQ=255)
tgaCGCTTCTTCAAGGCACCCCGGCGGCGGTTG‑TTATTTTTGGGTCTCAGTTGGCTGATTAAACTCACCAGATACTCGC‑GACAACAAATATACCTAC‑CGTTAACGGTGTAGGTTGCCCGTTCAGTCCGGCGCAAATTa > 4:572869/1‑138 (MQ=255)
cGCTTCTTCAAGGCAACCCGGCGGCGTTAT‑TTATTTTTTGTTAAAAGTTGGGGGAAATAAAAAAACACATTCAACA‑CAAAACAAAAAAACCAAA‑CGTTAAAGTTGGAGGTTACCCGATCAGACCCGCGCAAATTAACa > 2:517492/1‑138 (MQ=255)
ccaggcggcGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCAttttt < 4:153994/135‑1 (MQ=255)
ccGGCGGCGTTAG‑TTATTTTTGGTTGTCAGTTGGCTGATAAAAAACACCAGATAATCGA‑GAAAAAAAATATACCAAC‑CCTTTACGTTGTAGGTTCCCCCTTAAGGCCGGGGCAAAATACCATCGAAACAGCCattttt > 4:428062/1‑138 (MQ=255)
gcggctTTAG‑TTATTTTTGGTGCTCAGTTGGCTGATAAAACTCACCAGATACTCTA‑GAAAACAAATATTCCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:573433/138‑1 (MQ=255)
gcggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAGCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:259694/138‑1 (MQ=255)
gcggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 3:625479/138‑1 (MQ=255)
gcggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:847574/138‑1 (MQ=255)
gcggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:579893/140‑1 (MQ=255)
gcggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:574684/140‑1 (MQ=255)
gcggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:235460/140‑1 (MQ=255)
gcggcgTAAG‑TTATTTATGGCTCTCAGTTGGCAGATAAAACTCACCAGATACTCGA‑TAAAACATATATACCTAC‑CGTTAACGTTGGCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 6:907509/138‑1 (MQ=255)
ggcgTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:799933/138‑1 (MQ=255)
ttag‑ttaTTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATca < 5:195875/138‑1 (MQ=255)
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CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAG‑TTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGA‑GAAAACAAATATACCTAC‑CGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797345‑3797618
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
