Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F13 I0 R1
|
206 |
15500.2 |
9478722 |
98.3% |
9317583 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
13.6% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 13.6%
| 263.0
/ 11.0
| 158 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (34/99); new base G (23/2); total (57/101) |
| Fisher's exact test for biased strand distribution p-value = 3.43e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 166 total aligned reads displayed.
GCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797347‑3797618
|
ccTCCCGCTTTATGCAGTCGGTTCAGCAGGTGCTTAATAAAAATGAATTCCAGCCACTGCTTGGGGGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATTACGCTTCTTCAAGGCAACCCGGCGGC‑gttagtt < 8:157314/139‑1 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑ggtagt > 6:345311/1‑138 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTAGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGTCCACCCGGCGGC‑ggtaatgt > 8:49631/1‑136 (MQ=255)
tCCCGCTTTATGCATTCGTTGCAGCAGGTGATTAATAAAAATGAATTACAGCTACTGATTGGTTGTCATTAGTATAATCATCTCAAAGAAGATGAAATTCTGATGACGCTTCTTCACTGCAACCCGGCGGC‑ggtagtt > 2:497146/1‑138 (MQ=255)
tCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttagtt > 2:1205883/1‑138 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttagtta > 6:707287/1‑138 (MQ=255)
gCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTGTGGTAttttt > 3:832706/1‑140 (MQ=255)
cTTTATGCAGTCGTTGCAGCAGGGGCTAAATAAAAATGAATTCCAGCTACTGCTAGGGTGTAATGAGAATAATCAGCTCAAAGAAGCTGAAATTATGATGACGCTTCTTCAAGGCAACCCGGCGGC‑CGTTGTTAGTTTTg > 8:938224/1‑140 (MQ=255)
ttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGt < 7:435156/140‑1 (MQ=255)
tATTCAGGCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGtt < 7:1108250/140‑1 (MQ=255)
aTGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGCAATCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGACCCGGAAATTCTGATGACGCGTCTTCAAGGCAACCCGTCCGA‑GGTATTTAttttttgggg > 4:71734/1‑135 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAATAATGAATTCCAGCTACTGCTTGGGTGTCATGCGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTGATTTTTGGttg > 6:695754/1‑137 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGATCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGGATGTAtttttttgtt > 1:544373/1‑133 (MQ=255)
gTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTGTTTTTTTTTTGttgtgatt > 7:51273/1‑134 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTGTCAGtt > 7:912922/1‑140 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGt < 2:1047462/138‑1 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATGTATTTTTTGTTATGAGtt > 1:292118/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTTTTTTTTTTTGTTGTGAGtt > 5:132408/1‑138 (MQ=255)
tggggttaattaaAATGTATTTCACCTTCTGCTTGGGTTGCATTATTATTATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 7:415311/135‑1 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGTTTGTCTGGTGGCTGATAAAACTc > 4:1167826/1‑140 (MQ=255)
cTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTGCTCAGTTGGCAGATaaaaaaca > 7:346894/1‑136 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTTTTTTTGGTTAGCAGTTGGCGGATAAAACta > 6:270751/1‑137 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGGGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTTGTTATCAGTTGGGTGATAAAACTCAcc > 4:1148165/1‑140 (MQ=255)
aaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCATCTCATAGAATCTTATATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑TTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATAc < 7:15073/140‑1 (MQ=255)
aaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTATTTATTTTTTGTTGTCAGTTTGCGGATAAAACACAACAGCTaa > 3:22539/1‑139 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGATTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GTTAGTTATTTTTGGGGATAAGTGGGCGGATAAAAATCACCAGATagag > 8:1073878/1‑137 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGa > 4:1111029/1‑121 (MQ=255)
aaTTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATAcaagag > 4:101245/1‑135 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCTGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 4:1023149/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 5:45339/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 1:818502/138‑1 (MQ=255)
ttCCAGATACTGCTTGTTTGTCATGAGTATAATCATCTAAAAGAAGCTGAAATTATTATGACGCTTCTTCAATGAAACCCGGGGGC‑GTTAGTTATTTTTGTTGCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 5:1072526/138‑1 (MQ=255)
tgacAGCTACTGCTTGGGTGTCAGGAGTATAATCAGCGCAAAGAAGCTGAAATTCTGATGACGCGTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 6:866046/135‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTTTTTTTTGTTGTAAGTTTGGTGATTAAACTAACCAGATACTCgcgca > 1:853419/1‑134 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 5:1037412/138‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 2:65537/138‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 5:368420/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATACGCAGCTCCAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 8:1055410/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 3:895068/140‑1 (MQ=255)
tcTTGGGTGTCATGAGTATATTCAGATCAAAGAAGATGAAATTCTGATGACGATTCTTCAAGGCAACCCGGATGC‑GTTAGTTATTTTTGGTTCTCCTTTGGCTGATAAAACTCACCAGATACTCGAGAAAAAAAatat < 5:670464/137‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCTAAGAAGCTGAAATTATGATGACGCTTCTTCAAGGGAACCCGGCGGC‑GTTAGTTATTTGTGGTTCTCAGTTGGCTGATAAAACTCTCCAGATACTCGAGAAAACTAatat < 2:886043/138‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAatat < 1:576153/138‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAatat < 5:597703/138‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAatat < 5:249748/138‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTATGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtac < 7:577196/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 1:1118592/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 3:759577/140‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacct < 8:705901/140‑1 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGt < 2:293507/138‑1 (MQ=255)
tGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTaa < 1:653352/138‑1 (MQ=255)
tGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTaa < 2:220832/138‑1 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 3:507858/140‑1 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 4:562161/140‑1 (MQ=255)
taATCAGCTCAAAGAAGATGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGt < 2:447539/138‑1 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTGTT‑TTTTTTTTTGTGAGTTGGGGGATTAAACTAACCAGCTACAAGTCAAAAAAAAAATAACAACCGTTTAAGTTGTggg > 7:599885/1‑140 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTGGTTATCAGTTGGGTGATTAAACTACCCAGAGACGCGAGAAATCCAATATACCTAACGGTTACGTTTTCgg > 4:578276/1‑140 (MQ=255)
aTCAGCTCAAAGAAGGTGAAATTCTGATGACGCTTCTTCAAGCCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCAGTTGGCTGATAATACTCACCAGATACTCGAGAAAACAATTATACCTTCCGTTAACGTGGTCGGt < 4:1038758/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 6:951368/138‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 2:1143694/138‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 3:1148165/140‑1 (MQ=255)
ctcTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCCAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTAACGTTAACGTTGTCGGTTcc < 4:69948/138‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGtt < 5:707287/138‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTAGAGAAAACAAATATACCTACCGGTAACGTTGTCGGTTccc > 8:724430/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTTTTATTTTTTTTTATGAGTTGGGTGTTAAAAATAAACAGATAATAGAGAAAAAAAATATAACAAACGTTAAAGTTGTAGGTTgccc > 3:110451/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGGTGCTAAAACTCCCCAGATACGCGAGAAAACAAATATTCCTACCGTTAACGTTGTCGGTTgccc > 4:925874/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTGTGTTTTTTTTGGTTGTGAGTTGGGGGATAAAAAGAACCAGCTTCGCGAGAAAACAAATATAACGACCGGGAACGTTGTggggtgc > 6:159294/1‑134 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTGTTATTTTTGGTTGTCAGGTGGCGGATAAAACTCACCAGATACGCGGGAAAACAAAAATTCCGACCGGTTACGTTGTCGGGTcccc > 8:500894/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTTGTTCTCAGTTGGGTGATAAAACTAACCAGATACTCGAGAAAACAAATATACCAACCGTTAAAGTTGTAGGTTcccc > 8:272076/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTTGTATTTTTGGTTGTCAGTTGGGTGATAAAACTCACCAGATAATCGAGAAAACAAATATAACGACCGTGAACGGTGTAGGTTgcc > 5:801197/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTTGTTTGCCGTTGGCTGATAAAACTCCCCAGATACTCGAGAAAACAAATATACCTTCCGGTTACCTTGTAGGTTacc > 6:547691/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTGTCAGTTGGCTGATAAAACACACCAGATTCTAGTGAAAAAAAATATAACTACCGTTATAGTTTTAGGTTgcc > 2:369822/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GGTTGTTTTTTTTTGTTGTCAGTTGGCGGATAAAACTGACCACATACTCGAGAAAACAAATATACCGACCCGTAAAGTTGTCGGTTcccc > 6:224605/1‑138 (MQ=255)
aagCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTTTTTTTAGTTGTGAGTTGGCTGCTAAAACTCACCAGATTTGAGGGAAAAAAAATAATCCTAACGGTTAAGTTTTAGGGTCCCCtttaa > 2:853965/1‑136 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTcc < 5:697076/138‑1 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 7:53929/140‑1 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 7:994861/140‑1 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTTGTTCTCAGTTTGCTGATAAAACTCACCAGATACTAGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTGCCCATTGAGtacc > 2:468790/1‑135 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTAcc < 2:544373/138‑1 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCAt < 4:45533/140‑1 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCAt < 7:694036/140‑1 (MQ=255)
gcttcAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGa < 6:594059/137‑1 (MQ=255)
aaGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCa < 8:599885/140‑1 (MQ=255)
aCCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCAtttttt < 4:1602/140‑1 (MQ=255)
cccGGCGGC‑GTTAGTTATTTTTGGTTGTCAGTTTGCTGATAAAACAAACAAGAAAATCGAGAAAAAAAAAATAACAACAGTTTAAGTTGTGGGTTAACCGTTCAGGCAGGCGCAAATTAACAAAGAAACACCAttttttt > 4:755563/1‑139 (MQ=255)
gcggc‑gTTAGTTATTTTTGTGTATCAGTTGTCTGATAAATCTCACCAGATACTCTAGAAATCAAAAATCCCTACCGATAACGTTGTCGGTTCCCCTTTCAGTCCGGCTAAACTTACCATCGAAACAGCATTTTTTGaa < 6:1070741/138‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCATTTGGCTGATAAAACTCAACAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:559165/138‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTTGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:296995/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGTCTGATAAAACTCACCAGATACTCGAATAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCAttttgaagc < 2:1215635/138‑6 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:342167/138‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:190184/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:339363/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:377637/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:220549/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:1019792/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGGCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 1:1073215/138‑1 (MQ=255)
gcgga‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATAATCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:190177/140‑1 (MQ=255)
gaggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:1151737/136‑1 (MQ=255)
ccggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGTTAAAACTCTCCAGATACTCGAGAAAACTAATATTCCTACCGTTTACGTTGTCGGTTCCCCTTTCAGGCCTGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 1:411819/137‑1 (MQ=255)
ggc‑gTTAGTTATTTTTGGATCTCAGATGGCTGATAAAACTCACCACATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:805165/138‑1 (MQ=255)
c‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATca < 3:125416/140‑1 (MQ=255)
|
GCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797347‑3797618
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
