Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F13 I0 R1
|
284 |
16785.3 |
10492142 |
98.3% |
10313775 |
134.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
13.5% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 13.5%
| 285.4
/ 6.1
| 146 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (36/86); new base G (21/3); total (57/89) |
| Fisher's exact test for biased strand distribution p-value = 1.34e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 163 total aligned reads displayed.
CCAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797344‑3797618
|
ccAGCTCCCGCTTTATGCAGTCGGTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATACTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgt < 5:699170/138‑1 (MQ=255)
ccgCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGGCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgtt < 5:1155582/136‑1 (MQ=255)
aGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttt > 5:899305/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGACGCTGAAATTCTGATGACGCTACTTCAAGGCAACCCGGCGGCgttaggtt > 7:361183/1‑135 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgtttgttt > 5:551743/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttagttt > 6:94069/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttagtta > 8:939514/1‑138 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtagttt > 4:665038/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCggtagtta > 3:430422/1‑138 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTAAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttagttt > 3:661117/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCACCAGGTGCTTAATAAAAATGAATTACAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTTATGACGCTTCTTCAAGGCAACCCGGCCGAgttattgt > 3:1295949/1‑134 (MQ=255)
accGATTTATGCAGTCGTTGCAGCAGGTGCTAAAAAAAAATTAATACCATCTACTGCTTTGGTGTCATGAGTATAATCAGCTAAAAGAAGCTGAAATTAAGATTACGATTCTTCAAGGAAAACCGGCGGagttagttt > 6:76815/2‑137 (MQ=255)
cGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTAtt < 4:899602/138‑1 (MQ=255)
cGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTAtt < 2:934598/138‑1 (MQ=255)
cGCTTTATGCAGTCGTGGCAGCAGGTGCTTACTAAAAATGAATTCAAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTAtt < 8:1115095/138‑1 (MQ=255)
cGCTTTATGCAGTCGTGGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGGCATGATGATAATCAGCTCAAAGAAGCTTAAATTCTGATTACGCTTATGCAAGGCAACCCGGCGGCGTTAGTTAtt < 6:199414/138‑1 (MQ=255)
cTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTAtttt < 7:384504/138‑1 (MQ=255)
ttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTg < 1:1166776/138‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTgg < 4:1243862/138‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑t < 6:555838/138‑1 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCCACCCGGCGGCGTTAGTTTTTTTTGGTTCGCAG‑tt > 4:15682/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑tt > 7:113299/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTGCTCAG‑tt > 6:1198467/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGTGTTATTTTTTGTTATCAG‑tt > 1:830725/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTGGTTGTGAG‑tt > 7:441219/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTTGGTCTCAt‑tt > 3:633412/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTGGCAG‑tt > 2:414774/1‑138 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTg < 7:738612/138‑1 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGGGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTg < 4:443612/138‑1 (MQ=255)
cagctgTTGCTTAATAAATATGACTTCCAGCTCCTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCTAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCt < 4:937960/138‑1 (MQ=255)
agcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCTTTATTTATTTTTTGTTCTAAG‑TTGGcgg > 6:826068/1‑136 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTTGCTGATaaa > 2:15118/1‑138 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTATTTATTTTTTGTTCTCAT‑TTGGGTGATAAAAc > 7:324593/1‑138 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGAGGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTGGTTGTCAG‑GTGGCTGATAAAAcaa > 3:567407/1‑136 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGAGGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTAGTTTTTGTTGTCAG‑TTGGATGTTaaaaaga > 5:1077470/1‑135 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTTGGTGTCATGAGTATAATCAGCTAAAAGAAGATGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCa < 3:15503/138‑1 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCa < 2:241990/138‑1 (MQ=255)
aaaaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTATCAG‑TTGGCGGATAAAACTCACCAg > 2:968197/1‑138 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTGATTTTTGGTGCGAAG‑TTGGAGGCTAAAACACACCACAtca > 4:1005801/1‑136 (MQ=255)
ttgcAGCTAGTGCTTGGGTGTCATGAGTATAATGAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCgag < 5:752488/135‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCATAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGGATTTATTTTTTGTTATCAC‑TTGGCTGATAAAACTCACCACATAcaagag > 7:398452/1‑133 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCgag < 7:309716/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCgag < 2:261924/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCgag < 4:547255/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCgag < 1:508902/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCgag < 1:430063/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCgag < 8:113299/138‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 5:645588/138‑1 (MQ=255)
aGCTACTGCGTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGATATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 4:377166/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 4:527036/138‑1 (MQ=255)
gCTTGGGTTTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAatat < 6:896995/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAACTCAGCTGATATTCTTATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 5:585328/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGCTGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 6:272670/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTGAAGGCAACCCGGCTGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:1228462/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 5:635675/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:883282/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 1:311757/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:1122837/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGGTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:1185049/138‑1 (MQ=255)
cTTGGGGGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:1243543/138‑1 (MQ=255)
gtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTATTTATTTTTTGTTCTCAG‑TTGGCTTATAAAAATAACCAGATAATCTAGAAAAAAAATATACATACCg > 6:1026526/1‑138 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTTTGTATCAG‑TTTGCTGATAAAAATAACCAGATACACGAGAAAAAAAATATAACTACCGttt > 2:132791/1‑137 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGGTGTCAG‑TTGGCTGATAAAACTCACCAGATAAACGAGAAAAAAAAAATACCAACCCTTa > 2:126321/1‑138 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTAAAGGCAACCCGGCGGCGTTAGTTATTTTAGTTTATGAT‑TTGGGTGATAAAAATAACCAGATAATCGAAAATAAAAATATAAATACCGttt > 1:1096363/1‑137 (MQ=255)
gAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTTTTTTTTGTT‑TGAGTTTGGGGGTGAAATAGAACCAGATAAGCGAGGATACAAATATACAAACCGTTTAc > 5:980850/1‑138 (MQ=255)
gAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTATTTATTTTTTGTTCTCAG‑TTGGCTGATAAAACTCACCCGATACTCGAGAAAACAAATATAACTACCGTTaaa > 1:717872/1‑137 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCTGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 5:826068/138‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 8:459535/138‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTGTCAG‑TTGGCTGATAAAACTCACCAGCTACTCGAGAAAACAAATATACCTTCCGTTTACGTTGTGGGt > 4:856383/1‑138 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 1:391240/138‑1 (MQ=255)
cgCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGCTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGtt < 4:37873/137‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCTGCGGCGTTAGTTATTTTTGGTTCTCAC‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATCCCTACCGTTAACGTTGTCGGtt < 2:767192/138‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGtt < 8:600123/138‑1 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTATTTTTGGTTCTCAG‑TTGGCGGCTTAAACGCACCCGATACTCGATCACACAAAAAAACCACCCGGTAACGGTGTCgggggccc > 4:685087/1‑132 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTTTTTTTGGTTCTCAG‑TTGGCTGATAAAACGCCCCAGATACTCGAGAAAACAAATATAACTACCGTGTACGTTGTGGGTTgccc > 6:732244/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAAGTCACCAGATAATCGAGAAAACAAATATACCTACCGTTTACGTTGTCGGTTcccc > 4:769861/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTGTCAG‑TTGGCTGATAAAACTCACCAGATACGCGAGAAAACAAATATAACTACCGGTTACGTTGTCGGGTcccc > 2:453646/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGGTGTTATTTTTGGGTGGCAT‑TTGGGTGGTAAAAATAACCCCATACTCGAGACAACAAATAAAACAACCCGTAAAGTTTTCGGTTcccc > 4:1240987/1‑138 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATATAACTGACAAGGTACTCCTGAACACAAATATACCTCCCGGTAACGTTGGCGGTTccccg > 8:524034/1‑137 (MQ=255)
aaaGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTTTTTTTGTTTGTTAG‑GTGGGTGTTAAAACGAACCCCAAACACGTGACAAAACATATAACTAACGGTAAAGTTGTCGGttagccc > 7:950985/1‑133 (MQ=255)
aagCTGAAATTCTGAAGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCAACAGATACTCGAGAAAACAAATATACCTACCGTTAAAGTTGTCGGTTCCCCTTTCa < 6:1101326/138‑1 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCTGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTcc < 5:96742/138‑1 (MQ=255)
taaaTTCTGATGACGCTTCTTCAAGGCAACACGGCGGCGTTAGATATTTTTTGTTATAAG‑TTGGATGATAAAACTCACCACATAATAGAAAAAACAAATATAACACACGTTTAAGTTGTAGTTTACCCTTTCAGTcag > 2:1229535/2‑136 (MQ=255)
tgaCGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTTTTTTTGGTTATCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATAACTACCGTTAACGTTGTCGGTTACCCATTCAGTCCGGCTCAAAATa > 8:407844/1‑138 (MQ=255)
tcttcAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGa < 3:1014153/138‑1 (MQ=255)
cAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACa < 2:1153174/138‑1 (MQ=255)
cccGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCAttttt < 2:58814/138‑1 (MQ=255)
ccGGCGGCGTTAGTTATTTTTTGTTCTCAG‑TTGGCTGAAAAAAATCACCACATACTCGAGAAAACAAATAAAACAACCGTTAACGTTGTCGGGTACCCTTTCAGTACGGCAAAAAATAACAAAGAAACAGCAtatttt > 2:1329108/1‑138 (MQ=255)
gcggcgTTAGTTATTTTTTGTTGTCAG‑TTTGCTGATAAATCTCAAGAGATTCTAGTGTTATCATTTTTACCTTCGGTTTTAGTTGTCGGTTCGCCTTTCTGTCCGGCTCATATTACCATCGAAACATCTTTTTTTGaa < 2:530702/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 7:54755/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 3:725920/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 1:15118/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 6:205164/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 8:627497/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGGTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 7:527324/138‑1 (MQ=255)
gcggagTTAGTTATTTTTGGTTATCAT‑TTGTCTTATAAAACTCACAATATACTCGAGAAAACAAATATACCTACAGTTAACGTTGTATGTTCCCCTTTAAGTCCGGCTCAAATTACAATCGAAACAGAATTTTTTGaa < 2:568337/138‑1 (MQ=255)
gaggcgGTAGTTAATTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCCAGAATACAAATTTACCTAACGTTAAGGGATTCGGTTCCCCTTTCAGTCCGGCGCAAATTACCATCGAAACAGCATGTTTTGaa < 8:171526/136‑1 (MQ=255)
ggcgTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 1:1206197/138‑1 (MQ=255)
ggcgTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:476298/138‑1 (MQ=255)
gttagttaTTATTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCGCAAATTAACATCGAAACAGCATTTTTTGAAGCATc < 6:319016/138‑1 (MQ=255)
|
CCAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAG‑TTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCA > NZ_CP022686/3797344‑3797618
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
