Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F35 I0 R1
|
275 |
15706.7 |
10805118 |
98.3% |
10621430 |
134.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,481 |
T→G |
10.9% |
L130V (TTA→GTA) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,481 | 0 | T | G | 10.9%
| 320.8
/ 7.9
| 182 | L130V (TTA→GTA) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (50/107); new base G (22/3); total (72/110) |
| Fisher's exact test for biased strand distribution p-value = 1.13e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 192 total aligned reads displayed.
AGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAT > NZ_CP022686/3797346‑3797616
|
aGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttt > 3:1133978/1‑137 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttt‑gtgt > 7:528704/1‑138 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGATTTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAGCCCGGCGGC‑ggtt‑gttt > 3:465992/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttttttt > 1:1236209/1‑133 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gttt‑gttt > 3:878679/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gtta‑gttt > 5:599537/1‑137 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTGGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑gtta‑ggtt > 6:724151/1‑135 (MQ=255)
cTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGTCGGC‑GTTA‑GTTATTTTTg > 7:1035328/1‑140 (MQ=255)
tttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGATTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGAAGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑Atttttttt > 2:917636/1‑138 (MQ=255)
tATGCAGTCGTTGCAGCAGTTGCTTTATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTgg < 6:305955/138‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGtt < 7:261586/140‑1 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGTGTATAATCAGATCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑GGTTTTTTTGGttg > 3:1196120/1‑137 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGttg > 6:906100/1‑137 (MQ=255)
ccAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATACCAGCTACAGCTTGGGTGTCATGCGAATAAACAGCTCAAAGAAGCTGAAATTCTGATGACGCATCTTCAACGCAACCCGGCGCC‑CTTA‑ATTATTTTTGGttg > 4:817251/2‑137 (MQ=255)
cAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTCAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTAattttttttgt > 3:487020/1‑132 (MQ=255)
gTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTTATGACGCTTCTTCAAGGCAACCAGGCGGC‑GGTA‑GTTTTTTTTTGTTTTCAGt > 8:628040/1‑140 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGt < 1:705021/138‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGt < 1:1371347/138‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTg < 7:1186535/140‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTg < 7:933700/140‑1 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑GTTTTTTTTTGTTGTGAGt > 4:893161/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GTTT‑GTTATTTTTGGTtctacgtt > 6:345053/1‑133 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTTGTTCTCAGtt > 5:435849/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATATTTGGTtctaattt > 3:1024385/1‑133 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑TTTTTTTTTGGTTGTCAggt > 1:410394/1‑136 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCGTCAAGGCAACCCGGCGGC‑GTTT‑GGTTTGTTTGGGTGGCAGtt > 6:588516/1‑138 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATCAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATATTTGGTTATCAGtt > 4:68456/1‑138 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGGTCTCAGTTg < 4:718746/138‑1 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTTTTTTTTGTTGTAAGtttgggg > 8:1221419/1‑135 (MQ=255)
agcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTTTTTTTTGTTGTCAGTTgtcgg > 6:1014014/1‑134 (MQ=255)
gcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGTGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGa < 5:259185/138‑1 (MQ=255)
gcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATa < 7:462198/140‑1 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATaa < 2:526798/138‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 4:490680/138‑1 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCACGGCAACCCGGCGGC‑GTTATGTTA‑TTTTGGTTCTCAGTTTGCTGATaaaaata > 8:311827/1‑137 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTGGTTCTCAGTTg > 7:971793/1‑127 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAAc > 2:1361535/1‑138 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGTTATGAGTTTGCTGATAAAAcaa > 7:508498/1‑138 (MQ=255)
cTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACt < 2:168015/138‑1 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCAGAGTTTGATGTTAAAAcaa > 4:1002620/1‑136 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCAGGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTc > 4:752009/1‑138 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑TGTAATTTAGGTTCTAAGAAGGCTGCTAAAAcaca > 4:930673/1‑138 (MQ=255)
ataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑TTTTTTTTTGGTTGTGAGTTGGCTGATAAAACTCACCAg > 7:993076/1‑140 (MQ=255)
aaaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGa < 1:1241923/138‑1 (MQ=255)
aaaaTGAAATGCATCTACTGCTTGGGTGTCATTAGTAAAATCATCTGAAAGAATCTTAAATTATGTTGCCGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGa < 5:1166021/138‑1 (MQ=255)
tGAAATCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCg < 7:190829/140‑1 (MQ=255)
taaTTACAGCTACTGCTTGGGTGTCATGAGTATACTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGTCGGC‑GTTA‑GTGATTTTTGGTTCTCAGTTGGCTGATATAACACACCAGATaata < 5:447672/137‑4 (MQ=255)
gAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTT‑GTAATTTTTGGGAGAGAG‑TGGGGGATAAAACACACCACATACTc > 5:183464/1‑138 (MQ=255)
aaTTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCg < 5:850038/138‑1 (MQ=255)
ttCCAGGTTCTGGTTGTGGGTCATGAGTATAATCAGCTCAATGAAGCTGTAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:514490/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATACTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:997979/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 1:1122920/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 5:1279767/138‑1 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 4:1063621/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 3:921621/138‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 2:713240/138‑1 (MQ=255)
tGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGAAACCCGGCGGC‑GTTT‑GTTATTTTTTGTTCTCAGTTGGCTGAAAAAAATCAACACATACACGAGGAAAAAAata > 6:695397/1‑138 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 1:223331/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 4:1162764/138‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtac < 2:1047116/138‑1 (MQ=255)
ggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTTGTTCTCAGTTGGATGATAAAAAACACCAGATAATCGATAAAACAAAAAaaccta > 4:357611/1‑138 (MQ=255)
gAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAAc < 6:872356/138‑1 (MQ=255)
aGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTACACAGATACTCGAGCAAACAAATATACCAACCGGTAACggt > 7:828986/1‑138 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGtt < 3:1362902/138‑1 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGtt < 3:689931/138‑1 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTTTTTTTTGGTGTCAGTTGGCGGATAAAACTAACCAGATAAACGAGAAAACAAATAAACCAACCCTTAACGCTGt > 8:176944/1‑140 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGGT‑GGTTTTTTTGGTTGTCAGTTGGGTGTTTAAACAGACCAGATACGAGAGCAAACAAATATAACTACCGGTTACGTTGt > 3:528248/1‑138 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑TTTTTTTTTGGTTGTCAGTTTGGTGTTAAAACTCACCAGCTACTCGGGAACAAAAATATAACTAACGGTAAAGttttt > 6:1254945/1‑135 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 7:657255/140‑1 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCAGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCgg < 5:1263355/138‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 2:407507/138‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑GGTATTTTTTGGTGGCAGTTGGGTGTTTAAAAGCACCAGATAAACGGGTAAACAAAAATAACTACCGTTTAAGTTGTCgggtgcc > 7:1287007/1‑135 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTGA‑GTTATTTTTGGTTGTCAGTTGGCTGATTAAACTCACCAGATACTCGAGAAAACAAATAAACCTACCGTTAACGTTGTCGGTTcc > 4:178372/1‑138 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑GTTTTTTTTGGGTGTACGTTGGCTGATAAAACACACCAGGATCGCCAGAAAACCAATATACCGACCGGTAACG‑TGTAGGTTaccca > 8:166168/1‑139 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGCTAATCGAGAAAACAAATATACCTACCGTTAAAGTTGTCGGTTcccc > 8:847488/1‑140 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCTGCGGC‑GTTT‑GGTTTTTTTTGTTGTAAGGTTGCGGATAAAACAGAACAGATAAACGGTAAATCAAATATACCTAACGTTTAAGTGGTAGGGTcccc > 5:1202134/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GGTTTTTTTGGTTCTCAGGTGGCGGGTAAAACGAACCAGATACACGAGAAAACAAATATAACTACCGTTAACGGTGTCGGGTcccc > 2:1357913/1‑138 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GTTA‑GTTATTTTTGGGTGTCAGTTGGCTGATAATACTCCCCAGATACTCGAGACAACAAATATACCTACCGTTAACGTTGTGGGTTACCCGTTCAGTGCg > 8:359090/1‑140 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCCGCGGC‑GTTA‑GTTATTTTTGGTTCGCAGTTGGGTGTTAAAACTCACCAGATACTCGAGAAAACAAATATAACTACCGTTAACGTTGTAGGTTCCCCTTTCAGTCCg > 4:1201012/1‑138 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 2:39314/138‑1 (MQ=255)
aTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGATGATAAAACTCACCAGATACTCGAGTAAACAAATATACCTACCGTTAACTTTGTCGGTTCCCCTTTCAGTCCGGCt < 4:1275582/138‑1 (MQ=255)
tCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGTTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCa < 4:242128/138‑1 (MQ=255)
tgatgaCGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCaaa < 2:1030071/138‑1 (MQ=255)
tcttcAAGGCACCCAGGCGTC‑GTTA‑GTTATTTTTGGTTCTCAGTTGTCTGATAAAACTCACCAGATACTCGAGAAAACATATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGa < 4:839708/138‑1 (MQ=255)
tcttcAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGaaa < 8:1057288/140‑1 (MQ=255)
ggCAACCCGGCGGC‑GTTA‑GTTTTTTTTGGTTGTCAGTTGGCTGATAAAACTAACCACATAATCGAGAAAACAAATATAACTAACCTTAACGTTTTAGGTTGCCCGTTGAGGACGGCTCAAATTAACAACGAAACAGCAtt > 8:886745/1‑140 (MQ=255)
cAACCCGGCGGC‑GTTT‑GTTATTTTTGGTTATCAGTTGGCTGATAAAACTCACCAGAAACACGTGAAAACAAATATAACAAACGGTAAAGTTTTAGGGTCACCTTTAAATACGGGTCAAAATAACATCGAAAccacaat > 2:1262318/1‑132 (MQ=255)
gcggc‑tGTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACATACCGTTAAAGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:349810/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCATTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 6:435849/138‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATTAAACTAACCAGATACTCGAGAAATCAAATATACCTACCGTTAACGTTGTGGGTTCCTCTTTCAGTCCGGCTCAAATTACCATCTAAACAGCATTTTTTGaa < 1:1154693/138‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 3:554085/138‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 3:35512/138‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 2:244521/138‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:916862/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:289505/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACAGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:702316/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGATGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATCACCATCGAAACAGCATTTTTTGaa < 1:1363729/138‑1 (MQ=255)
gcggc‑gGTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:1144658/138‑1 (MQ=255)
ggc‑gTTA‑GTTATTTTTGGTTCTCATGTGGCAGATAACACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:340403/138‑1 (MQ=255)
c‑gTTA‑GTTATTTTTGGTGCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGACGCAt < 6:1169273/138‑1 (MQ=255)
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AGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAT > NZ_CP022686/3797346‑3797616
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
