Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
5,001,164 |
A→C |
11.0% |
N163T (AAC→ACC) |
ompG → |
monomeric porin OmpG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 5,001,164 | 0 | A | C | 11.0%
| 236.9
/ 3.1
| 143 | N163T (AAC→ACC) | ompG | monomeric porin OmpG |
| Reads supporting (aligned to +/- strand): ref base A (61/59); new base C (2/18); total (63/80) |
| Fisher's exact test for biased strand distribution p-value = 5.26e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 148 total aligned reads displayed.
ATCACTACGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGCCGCAATAAC > NZ_CP022686/5001026‑5001294
|
aTCACTACGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAac > 7:723259/1‑140 (MQ=255)
aTCACTACGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAac > 7:644477/1‑140 (MQ=255)
cACTACGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAacac > 2:1030583/1‑140 (MQ=255)
aatACTTTTATGAACTGGGTAAAGACACGGCGAATATGCAGCGCTGTAAAATTGCGCCAGACTGGGATGGGAAAGTGACTGACGATTTACGTTTCAACGGTGGGCTGTCGATGTATAAATTTCCCAAC‑GATTTGAACACg < 8:155311/138‑1 (MQ=255)
tACGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGAc > 2:1001747/1‑140 (MQ=255)
cGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGTCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCg > 3:230487/1‑140 (MQ=255)
cGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCg > 5:231278/1‑140 (MQ=255)
cGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCg > 3:682629/1‑140 (MQ=255)
tgatgaACGGGTAAAAGACACGGCTAATAGGCCGCGCGGCAAAATTGCGCCTGATTGGGTTGTGAAACTGACTGACTATTTACGTTTCAACGTTGGGCGGTCGATGTATAAATTTGCCAAC‑GATTTTAACACGACCGGtt < 2:347558/140‑1 (MQ=255)
tgatgaACCGGTTAAAGACACGGCTAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATTTATAAATTTGCCAAC‑TATTTGAACACGACCGGtt < 2:432649/140‑1 (MQ=255)
tattaaCCGGTTAAACACCCGGCTAATATGCCGCGCTGTAAAAGTGCGCCCGACTGGGATGTGAAACTGACTGACGATTTCCGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑TATTTCAACACGACCGGTTa < 4:107091/136‑1 (MQ=255)
tatgaACCGGGTAAAGACACGGCGAATATGCTGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACGGACTGCCGATTAACGTTGAACCGGTGGGCGGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTa < 6:149281/139‑1 (MQ=255)
gattaACCGGGTAAAGACACGGCGAATATGCAGCGCTGTAAATTTGCGCCAGACTGGTATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATTTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTa < 4:1060745/140‑1 (MQ=255)
cttaaCGGGGTAAAGACACGGCGAATTTGCAGCGCTGTAAAATTGCGCCCGACTGGGATGGTAACCTGACGGCCGATTTCCGTGTCAACGGTTGGCTGTCGAGGTATAAATTTGCCAAC‑GATTTTACCACGACCGGTTAc < 2:209421/137‑1 (MQ=255)
atgaACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTAc > 5:572258/1‑140 (MQ=255)
atgaACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCAGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTAc > 5:467561/1‑140 (MQ=255)
aaCCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCt > 7:909940/1‑140 (MQ=255)
ccGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGa > 8:12429/1‑140 (MQ=255)
gggTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGCCTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATa > 7:231104/1‑140 (MQ=255)
ggTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGCTTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAGC‑GATTTGAACACGACCGGTTACGCTGAtcc > 2:739607/1‑138 (MQ=255)
ggTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATAc > 7:554640/1‑140 (MQ=255)
cGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaa > 5:837891/1‑140 (MQ=255)
cGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaa > 6:183961/1‑140 (MQ=255)
cGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATATACGTATCAACGGTTGGCTGTCGATGTATAAATTTGCAAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaa > 5:690757/1‑140 (MQ=255)
ggCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaaa > 5:570036/1‑140 (MQ=255)
ggCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaaa > 3:127743/1‑140 (MQ=255)
ggCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaaa > 2:447225/1‑140 (MQ=255)
ggCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaaa > 2:35190/1‑140 (MQ=255)
ggCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaaa > 6:472082/1‑140 (MQ=255)
ggCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTGTCAACGGTGGGCTGTCGATGTATAAAGTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCgaac > 3:959802/1‑139 (MQ=255)
tctGCCGCGCGGGAAAATGGCGCCACACTGGGAGGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATTTATAAATTTCCCACC‑GATTTCAACACGACCGGTTACGCTGATACCCGTGTCgaaacggaaa < 4:973303/138‑1 (MQ=255)
tGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTAGAAGTATAAATTTGCCAAC‑GATTTGCACACGACCGGTTACGCTGATACCCGTGTCgcaacggaaacg > 8:980201/1‑140 (MQ=255)
cgcgcTGTAAAATTGCGCCAGACTGGTATGTGAAACTGACTGACGATTTTCTTTCCACGGGTTGGCTTTCTATTTAAAAATTTCCCAAG‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGt < 1:754667/139‑1 (MQ=255)
aGCGCTGTAAAATTGCGCCAGACTGGGTTGTTAAACTGACTGACGATTTACGTTTCAACGTTTGGCTGTCGATGTATAAATTTCCCAAG‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGt < 3:422787/140‑1 (MQ=255)
gcgcTGGAAAATTGCGCCTGACTGGGATGTGAAACTGACTGACGATTTACGTTTAACCGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTc < 3:589432/140‑1 (MQ=255)
gcgcTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTc > 1:334056/1‑140 (MQ=255)
taaaaTTGCGCCTTACTGGGATGTGACACTGACTGATGATTTACGTTTAAACGGTGGGCTGTCTATTTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAat < 8:259770/139‑1 (MQ=255)
gAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAat > 3:148325/1‑140 (MQ=255)
aaaaTTGCGCCAGACTGGGATGGTAAACTGCCTCACTATTTACGTTTCACCGGTTGGGGGGCTATGTATAAATTTGCCAAC‑TATTTCAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAata < 7:275336/140‑1 (MQ=255)
ttGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATAcc > 8:109653/1‑140 (MQ=255)
ttGCGCCAGACTGGGATGTGAAACTGACTGACGAATTACGTTTCACCGGTTGGCTGTCGATGTATAAATTTGCCAAA‑GATTTGAACACGCCCGGTTACGCAGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATAcc > 8:851874/1‑140 (MQ=255)
ggcgcCAGCCTGGTATGTGAAACTGACTGCCGATTTACGTTTCACGGGTGGGCTGTCGATGTATAATTTTGCCAAC‑GATTTCACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCt < 2:634534/139‑1 (MQ=255)
ccAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTGTAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCaa > 6:772918/1‑140 (MQ=255)
ccAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCaa > 5:490506/1‑140 (MQ=255)
ggtaTGTGAAATTGACTGAATATTTTCGTTTAAACGGTTGGCTGTCTTTTTATATATTTGCAAAC‑TATTTCATCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACg < 7:743962/137‑1 (MQ=255)
tgAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGcc > 1:124057/1‑140 (MQ=255)
gAAACTGACTGACGCTTTACGTGTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCGGCAATCTACCTTCCACGAAACGGTTGCCt > 8:612471/1‑140 (MQ=255)
aaaCTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCt < 8:600900/139‑1 (MQ=255)
aaaCTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCt > 7:600900/1‑139 (MQ=255)
ctgactgaCGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCg > 3:127853/1‑140 (MQ=255)
tgagtgacTATTTAGGTTTCACGGGTTGGCTGTCGATGTATAAATTTGCCAAC‑TATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGa < 1:870620/140‑1 (MQ=255)
tgactgacGATTTACGTTACAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGa < 8:577865/140‑1 (MQ=255)
ttgacttttttCGTTTCACGGGTTGGCTGTCTATTTAAAAATTTCCCAAC‑TATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 8:723259/133‑1 (MQ=255)
ttgacCATTTACGTTACAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑TATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 8:960995/139‑1 (MQ=255)
gtgactttttAAGTATCAACGGTGGGCTTTCGTTGTTAAAATTTGCCAAC‑TATTTGCACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 6:414584/133‑1 (MQ=255)
ctgacTATTTACGTTTAAACGGTTGGCGGTCCATTTTAATTTTTGACACC‑TATTTGAAGCCGACCGGTTACGCTGATACCCGTGTCGAAACTGAATCGGGGCTGCAATATACCTTCAACTAAACGGTTGCCTTGCGAggg < 7:923765/140‑3 (MQ=255)
ctgacTATTAACGTTTCAAGGGTGGGCTGTCGATTTATAAATTTCCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 7:708073/140‑1 (MQ=255)
ctgacTATATACGTTTCACCGGTTGGATTTAGATTAAAAAATTTGCCAAC‑TATTTTAACACTACCGGTTACGCTGATACCAGTGTCGAAACGGAAACGGGTCTTCAATATAACTTCAACGAAACGGTTGCCTTGCGAGTg < 8:415424/140‑1 (MQ=255)
ctgacGATTTAGGTTTCAACTGTTGGCTGGCGATGTAAAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 8:866760/140‑1 (MQ=255)
ctgacGATTTACGTTACAACGGGTGGCTGTCTATGTATAAATTTCCAAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 1:651364/140‑1 (MQ=255)
ctcacGATTTCCGTTTCAACGGGTGGCTGGCTATGTATAAATTTGCCAAC‑GATTTGACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 7:578636/137‑1 (MQ=255)
ctcacGATTTACGTTTAAAGGGTTGGCTGTCTATGTATAAATTAGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 3:1094218/137‑1 (MQ=255)
ctcacGATTTACGTATCAAGTGTTGGGTTGGCATGATTAAATTTGCCAAC‑TTTTTAACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTg < 8:30799/137‑1 (MQ=255)
gaggATTTACGTTTCAACGGTTGGCTGGCTATGTTTAAATTTGCCAAC‑TTTTTGACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGaa < 3:441977/137‑1 (MQ=255)
gactttttCCGTTTCAACGGTTGGCTGTCGTTTTATAATTTTGCCAAC‑GATTTTACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGaa < 3:554047/135‑1 (MQ=255)
gacGTTTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGaa < 2:260639/140‑1 (MQ=255)
gacGATTTACGTTTCAACGGTGGGCTGACTATGTATAAATTTGCCAAC‑GATTTCAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGaa < 8:186000/140‑1 (MQ=255)
gaagATTTATGTTTAACGGGTTGTCTTTCTATTTATAAATTTGCCAAC‑TATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGTTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGaa < 2:275292/137‑1 (MQ=255)
cattaTTTTCGTTTCTACGGTTGTCTTTCTATTTATAAATTTGCCATG‑TTTTTTAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACCGGTCTGCAATATACCTTCAACGAAACGGTAGCCTTGCGAGTGaa < 4:187453/136‑1 (MQ=255)
cactaTTTACGTTTCAACGTTTGGATGTCGTTGTATAAATTTCCCAAC‑GTTTTTACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGaa < 8:374982/136‑1 (MQ=255)
cacGAATTCCGTTCCAACGGTTGTCGGTCGATGTAAAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGaa < 6:907650/139‑1 (MQ=255)
tACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACtattat > 4:42683/1‑140 (MQ=255)
tACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACtattat > 2:564987/1‑140 (MQ=255)
accGGTTGGCTTGAGATTTATAAATTTGCCAAC‑GTTTTGATCACGACCGGTTACGCTGATAGCCGTTTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTTCCTTGCGAGTGAACTATTATCTCGAgcg < 4:1100191/138‑1 (MQ=255)
accGGTTGGCTGTCGATGTATAATTTTGCCAAG‑GATTTGACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAgcg < 5:992160/138‑1 (MQ=255)
aagggTTGGCTGTGGAT‑TTTAAAATTACCAACTGTTTTGACCACGACCGGTTACTCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCATCGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAgcg < 6:295772/137‑1 (MQ=255)
aagggTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAgcg < 1:607369/137‑1 (MQ=255)
aaCGGTTGGCTGTCTATTTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAgcg < 4:851578/140‑1 (MQ=255)
aaCGGTTGGCTGTCGATGTATAAATTTGCCAAC‑TATTTCAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAgcg < 6:322091/140‑1 (MQ=255)
aaCGGTGGGGTGGCTATGAATAAATTTGCCAAC‑TATTTGACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAgcg < 6:1056737/140‑1 (MQ=255)
aaCGGTGGGCTGTCGATGTTTAAATTTGCCACC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAgcg < 8:312128/140‑1 (MQ=255)
ggTTGGCTGTCTATTTATAAATTTCCCAAC‑TATTTTAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCgg < 3:135221/140‑1 (MQ=255)
gTTGGCTGTCTATTTATAAATTTGCCAAC‑GATTTCAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGt < 5:659639/140‑1 (MQ=255)
gggCTGTTGTTTTAAAAATTGGCCAAC‑TATTTCACCACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGttt < 3:92653/139‑1 (MQ=255)
gggCTGTCTATTTAAATATTTCCCAAC‑TATTGTAACCCGACCGGTTACGCTGATACCGGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGTGTGAAATATTATCTCGAGCGCGGttt < 2:844340/139‑1 (MQ=255)
gggCTGTCTAGGTATATATTTTAATAC‑GATTTGAACTCGACCGGTTTCGATGATCCCCGTGTCGAAACCTAAACGGGTCTGCATTATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGttt < 7:429823/139‑1 (MQ=255)
tCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATAACTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAatat > 1:126461/1‑140 (MQ=255)
actttGCCAAG‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGc < 3:760867/138‑1 (MQ=255)
aaTTTGCCAAC‑TATTTCAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGc < 1:359394/140‑1 (MQ=255)
aaTTTCCAAAC‑TATTTCAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGc < 1:1001747/140‑1 (MQ=255)
tGCCAAC‑GATTTGAACACGCCCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGATCTATTATCTCAAGCGCGGTTTCAATATGGATGATAGCCGCa > 3:156652/1‑140 (MQ=255)
tGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGCCGCa > 6:261689/1‑140 (MQ=255)
tGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGCCGCa > 6:695435/1‑140 (MQ=255)
tGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTGGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGCCGCa > 6:272636/1‑140 (MQ=255)
ggCCAAC‑TATTTGCCCACGCACGGTTTCGCTGATAGCCGTGGCGAAACTGAAACGGGTCTTCAATCTACCTTCAACGAAACGGTTTCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATTGATGATAGCCGCa < 3:217573/139‑1 (MQ=255)
acaaaC‑TATTTGATCTCGACCTGTTTCGCGTATAAGCGTGTCGTAAGTGACAGGGGTCTGAAATATACCTTCAACGAAACGGTTTCCTTGCGAGTGAACTATAATCTCGAGCGCTTTTTCATTATGGATGATAGCCGCat < 2:161388/137‑2 (MQ=255)
ccAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGCCGCAAt > 3:1045281/1‑140 (MQ=255)
ccAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGCCGCAAt > 8:280868/1‑140 (MQ=255)
ccAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGATTCAATATGGATGATAGCCGCAAt > 5:851952/1‑140 (MQ=255)
aggATTTGACAACGCCCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCTATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGGTTCAATATGGATGATAGCCGCAATAAc < 5:627255/138‑1 (MQ=255)
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ATCACTACGTTGATGAACCGGGTAAAGACACGGCGAATATGCAGCGCTGGAAAATTGCGCCAGACTGGGATGTGAAACTGACTGACGATTTACGTTTCAACGGTTGGCTGTCGATGTATAAATTTGCCAAC‑GATTTGAACACGACCGGTTACGCTGATACCCGTGTCGAAACGGAAACGGGTCTGCAATATACCTTCAACGAAACGGTTGCCTTGCGAGTGAACTATTATCTCGAGCGCGGTTTCAATATGGATGATAGCCGCAATAAC > NZ_CP022686/5001026‑5001294
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
