Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
5,043,855 |
T→A |
13.7% |
G1162G (GGT→GGA) |
CIW80_RS25525 → |
EntS/YbdA MFS transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 5,043,855 | 0 | T | A | 13.7%
| 206.4
/ 6.2
| 114 | G1162G (GGT→GGA) | CIW80_RS25525 | EntS/YbdA MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (46/44); new base A (7/5); total (55/59) |
| Fisher's exact test for biased strand distribution p-value = 7.62e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 114 total aligned reads displayed.
TGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTG > NZ_CP022686/5043717‑5043990
|
tGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCCCCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTa > 4:351902/1‑140 (MQ=255)
gagccGGATTCTATCCGTATACAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAacc < 1:114080/135‑1 (MQ=255)
aTCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTTCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCCCCGTAAACAATAACGGAAAAaccacc > 3:209633/1‑140 (MQ=255)
cgaaTTCGATTGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCg < 7:570440/135‑1 (MQ=255)
cGGATTCCCTCGGCATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGtt < 3:561820/140‑1 (MQ=255)
cGGATTCAATCGGTATTCAGATCGACGGCGACACGGCGGTCGTGTCCACCGAAGGTGACAGTGGCATCAGCAACGGCGGGACCGGCAAGCTGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCg < 1:186970/138‑1 (MQ=11)
ggATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTg < 3:68994/140‑1 (MQ=37)
ggATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTg < 3:145176/140‑1 (MQ=37)
taTTCCATCGGTATTCAGATCGACGGCGACAAGGTGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGa < 3:576944/139‑1 (MQ=37)
gATGCCAGCGGTATTCAGCTCGACGGCGACAAGGCGGTCGTGAACAACGACGTTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCTGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGAAAAACCACCGtt < 1:595106/138‑1 (MQ=11)
aTTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACCGCGGCACAGGCACGCTGCATAACGACGACCAAGCCACCGTAAACAATAACGGGAAAAGCACCGTTg > 2:454675/1‑138 (MQ=11)
ccATCTGTATTCAGATCGACGGCGACAATGCGGTCGTGAACAACGACGGTGACAGTGCGATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAAAAATAACGGTAAAACCACCGTTGATGGt < 5:163168/140‑1 (MQ=255)
ccATCGGTATTGAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt < 6:159670/140‑1 (MQ=37)
gaaTTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGc < 3:449033/138‑1 (MQ=37)
aTTCAGATCGACGGCGACCAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACTGTAAAACCAACGTTGATGGTCAGGGCTc < 6:443735/140‑1 (MQ=255)
cAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCg < 8:586872/138‑1 (MQ=37)
cAGATAGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACATTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAc < 6:823131/140‑1 (MQ=255)
cGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCGCGCAGGTTAACGGCGACGAAGCCACCCTTAACAATAACGGAATACCCAACGTTGATGGTCAGGGCTCGCCCgg > 1:352557/1‑138 (MQ=11)
cGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGaa < 3:283413/140‑1 (MQ=255)
cGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCCCGCAGGTTAACGGGCACGAAGCCACCGTAAACAATAACGGTAACACCACCGTTGAAGGTCAGGGGTCGACCGGCAc > 7:778393/1‑138 (MQ=11)
cGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGACGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGCCCGGAAc > 1:381012/1‑138 (MQ=255)
cGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGATTAACGGAGAAGAAGCCACCGTAAACAATAACGGCACAACCACCGTTGAGGGAAAAGTCTCGACCGGCAc > 7:420171/1‑138 (MQ=11)
aCAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCCCCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGATCTGaaa > 1:652348/1‑138 (MQ=255)
aaGTCGGTATTGAACAACGACGGTGTCCGGGCCCTCTCCCACGGCGGTACACGCTCGCTGTTTACCGGCGACGAAGCCACCGAAAACAAAATAGGGAATACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgc < 3:672496/140‑1 (MQ=9)
aaGGCCCTCGTCAACAACGACGGTGACAGTGCCATCATCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAACACCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATc < 7:707158/138‑1 (MQ=14)
aGGCGTTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcg < 7:814717/138‑1 (MQ=255)
cGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGCAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGTACTGAAATCGCgg > 1:763838/1‑138 (MQ=255)
ggTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCggg > 8:492404/1‑138 (MQ=255)
gTCGTGAACAACGACGGTGACAGTTCCATCATGCAGGGCGGCACCGGAAAGCTGTTTAACGGTGACGATGCCACGTCAAACAATACCGGTAAAACCACCGTAGAAGGTCAGGGTTCGACCGGAACTGAAATCGCGGGt < 2:592985/138‑1 (MQ=2)
gTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGGGAAGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGAACAGAAATCGCGGGtaa > 6:731145/1‑140 (MQ=255)
gTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGtaa > 3:181852/1‑140 (MQ=255)
gTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACGGAAATCGCGGGtaa > 4:140306/1‑140 (MQ=255)
gTCGTGAACAACGACGGTGACAACGCCATCAGCAACGGCGGCGCCGGCACGCAGGTTAAAGGCGACGAAGCCACCGTGAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAGCGGAAGCGAAATCACAGGtgc > 5:386384/1‑138 (MQ=11)
gTCGTGAAAAACGACGGTGACAGTTCCATCAGCAACGGCGGCCCCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTAAACAATAACGGTAAAAACACAGTTGATGGTCAGGGCTCGAACGGAACGGCAATCGCCGGtaa > 3:472044/1‑140 (MQ=11)
cGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGtaa > 2:386924/1‑138 (MQ=255)
cGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACCGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACGGAAATCGCGGGtaa > 7:615371/1‑138 (MQ=255)
gAACCACGACGGTGACACTGCCCTCCGCACCGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAAcg < 4:820066/140‑1 (MQ=14)
aacaacGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAAcgc > 4:214674/1‑140 (MQ=255)
aacaacGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGCACGGAACAGAAATCGCGGGTAATAAc > 1:162087/1‑138 (MQ=255)
ctacgGTGACAGTTCCATCATCAAGGGCGGCCCCGGCACGCCGTTTAACGGCGAAGAAGCCACCGCAAACAATATCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggt < 1:169600/136‑1 (MQ=14)
cgacgGTGCCAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGAGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACAGAAATCGAGGGTAATAACGCggtgg > 6:629983/1‑140 (MQ=255)
cgacgGTGACATTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggt < 8:432383/138‑1 (MQ=255)
cgacgGTGACAGTGCCATCAGTAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATATCGGGAAAACCACCGTTGATGGTCTGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggt < 7:678514/138‑1 (MQ=255)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg > 5:447392/1‑140 (MQ=255)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg > 6:391771/1‑140 (MQ=255)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggt < 7:768796/138‑1 (MQ=255)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAAGAACGCggtgg > 6:543614/1‑140 (MQ=255)
cgacgGTGACAGGGCCATCCGCTAGGGCGGCACCGGCACGCAGGTTAACGGCGACTAAGCCACCGTAAACAATACCGGAAAAACCACCGTTGATGGTCAGGTCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg < 4:148486/140‑1 (MQ=14)
cgacgGTGACAGAGCGATCCTTTATGGCGGCACCGGCACGCGCGTTAAGGGTGACGAAGCCACCGTAAACAAAACCGGCAAAACCACCGTTGAAGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggt < 1:684153/138‑1 (MQ=11)
cgacgGTGACAGAGCCATCCGCTATGGCGGCACCGGCACCCAGTTTAACGGCGACGAAGCCACCGAAAACAATAGCGGTAAAACCACCGTTGATGGTCAGGGATCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg < 6:579558/140‑1 (MQ=14)
acgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAGCGGAACTGAAATCGCGGGTAATAACGCggtgg > 8:271720/1‑138 (MQ=255)
tGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCCCCGTAAACAATAACGGTAAACCCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAcc > 5:762091/1‑140 (MQ=255)
aatGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATc > 8:684339/3‑111 (MQ=255)
tGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATACCGGAAAACCCACCGTTGCTGGACAGGGGTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACg > 5:358776/1‑140 (MQ=14)
gCCATCAGCCACGGGGGCACCGGCAAGCCGTTTAACGGCGACGAAGCCACTGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGAc < 2:151498/138‑1 (MQ=14)
gCCATCAGCCACGGCGGCACCGGCACGCAGGTTACCGGCGACGAAGCCACCGAAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGAc < 1:659694/138‑1 (MQ=255)
gCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGAc < 1:386924/138‑1 (MQ=255)
gCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACgg < 5:501741/140‑1 (MQ=255)
aTCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTGAACAATAACGGAACCACCACCGTTGAGGGTAAGGCATCGACCGGTACCGAGATAGCGGGTAAGAACGCCCTCGTGAACCAGGACggg > 1:513903/1‑137 (MQ=11)
aTCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt > 3:213268/1‑81 (MQ=255)
aTCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGa > 5:314235/1‑140 (MQ=255)
tCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGCTGGTCAGGGCTCGAACGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAGCAGGACGGCGac > 3:183371/1‑139 (MQ=255)
tCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAg < 6:314235/140‑1 (MQ=255)
gCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGAACGGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGAGAGc > 8:776828/1‑138 (MQ=255)
aaCGGCGGCACCGGCACGCAGGTTAACGCCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGAGGGTAAGGCCTCGACCGGAACAGAAATAGCGGGTAAAAACGCCGTGGTCAACAACGACGGCGCGCTGGa > 3:672704/1‑140 (MQ=17)
gcaccggcacGCAGGTTAACGGCGACGAAGCCATCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgc > 3:839823/1‑94 (MQ=255)
gcaccggcacGCAGGTTAACGGCGACGAAGCCATCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgc < 4:839823/94‑1 (MQ=255)
cggcacGCAGTTTACCGGCTAGGAAGCGACCGTAAACAATAACGTCAATACCACCGTTGAGGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAgcgg < 2:572812/138‑1 (MQ=11)
ggcacGCTGGTTCACGGCGACGATCCGACCGAAAACAAACAGGGAAAAACCACCGTAGATGGTCAGGGATAGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAgcgga < 7:414580/138‑2 (MQ=14)
gcacGCTGTTTACCGGCGACGAAGCCACCGGAAACAACACCGGTAAAACCACCGTTGATGGTCAGGGCGCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCggt < 4:675933/140‑1 (MQ=17)
catgTTACCGGCGAGTAAGCGACCGAAAAAAATAAGGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCggtggt < 7:461303/135‑1 (MQ=17)
cAGGTTAACGGCGACGAAGCCACCGTAAACAAAACCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 3:606268/140‑1 (MQ=255)
gtttacgggCGACGAACCCACCGAAAACAAAACCGGCAAAACCACCGTTGAAGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACg < 3:314585/133‑1 (MQ=14)
taccGGCGACGACCCCACCGTAAACAAACACGGGAAAACCACCGTTGATGGTCAGGGCTCGACCGTAACTGAAATCGCGTGTAATCACGCGGTGGTGAACCAGTACGGCTAGCGGGATGTCAGCGGCGGTGGTCACgg < 8:605903/135‑1 (MQ=17)
caccGGCGACGAACCCACCGCAACCACTCACGTTAAAACCACCGTTGATGCGCCCGGCTCGACCGCAACTTAAATCGCGGGAAATACCGCGGTTGTGCACCAGGACCGCGAGCTGGATGTCAGCGGCGGTGGTCACgg < 8:3372/135‑1 (MQ=255)
caaCGGGGACGACGCCACCTTAAACAAAAACTGCAAACCCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAAAAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACgggg < 5:795721/139‑1 (MQ=17)
cGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCTCGGGTAATAACGCGGGGTTGAACCAGGACGGCGGGATGGATGTCAGCGGCGGGGGACACgggtt > 7:75002/1‑136 (MQ=17)
cGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGGACCAGGACGGAGCGCTGGATGTCAGCGGCGGGGGTCACGGGGt > 2:673683/1‑138 (MQ=255)
cgacgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGATCTGTATGTCAGCGGCGGCGGTCACGGCATTGata > 6:275772/1‑140 (MQ=14)
cgacgaAGCCACCGCAAACAATACCGGCAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGata < 4:252841/140‑1 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAGAACCACCGTTGATGGTCAGGGCTCGCCCGGAGCTGAAATCGCGGGGTATAACGCGGTGGTGAAGCAGGACGGAGAGCTGGATGTCTGCGGCGGTGGTCGCGGGGTTGATATc > 3:241213/1‑140 (MQ=17)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAGCGGAACGGAAATCGCGGGTAATAACGCGGTGGTGAAGCAGGACGGCGCGCTGGATGTCAGCGGCGGGGGTCACGGGTTTGATATc > 4:809473/1‑140 (MQ=14)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGACCTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATc > 3:813840/1‑140 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATc > 6:51474/1‑140 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTAAGGGGTCGACCGGAACTGATATCGCGGGTAAAAACGCGGTGGTGAACAAGGACGGCGAGCTCGAGGTCCGAGGCGGTGGGCACGGGGGTGATATc > 3:811470/1‑140 (MQ=17)
gaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATg > 1:732048/1‑40 (MQ=40)
gaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATg < 2:732048/40‑1 (MQ=40)
gaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAACAGGACGGAGCGCTGGATGTCAGCGGCGGAGGTCACGGGATTgctgtc > 8:763382/1‑133 (MQ=14)
aCCGTAAACAATAACGGTAAAACCACCGTTGATGGGCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGc < 2:812747/138‑1 (MQ=255)
cGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCACGGCATGGATATCACCTGCGACa > 5:620152/1‑140 (MQ=14)
gTAAACAATAACGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAAAAACGCGGTGGTGAACCAGGACGGCGAGCGGGATGTCAGCGGCGGCGGTCACGGCAGTGATATCACGGGTGATAg > 6:83440/1‑140 (MQ=14)
aaaCAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAg < 7:442651/138‑1 (MQ=255)
caacaccGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTACTAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGGTGATATCACCGGCGACAGCGCaa < 4:43116/134‑1 (MQ=255)
cAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAgcgc > 1:456901/1‑138 (MQ=255)
aaacaaCGGCAAAACCACCGTTGACGGTCAGGCCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCaa < 3:14099/136‑1 (MQ=255)
aTAACGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACg < 4:581996/140‑1 (MQ=255)
cctgTAAAACCACCGTTGAGGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGGTGATATCACCGGCGACAGCGCAACGGTg < 3:560701/137‑1 (MQ=255)
aCGGTAAACCCACCGGAGATGGTCAGGGCTCGACCGGAACTGACAACGCGGGTAATAACGCGGTGGTGACCCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTg < 5:579265/140‑1 (MQ=17)
aCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTg < 3:351902/140‑1 (MQ=255)
aCGGGAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTg < 3:334683/140‑1 (MQ=255)
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TGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTG > NZ_CP022686/5043717‑5043990
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
