Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
5,043,855 |
T→A |
12.9% |
G1162G (GGT→GGA) |
CIW80_RS25525 → |
EntS/YbdA MFS transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 5,043,855 | 0 | T | A | 12.9%
| 277.0
/ 2.8
| 133 | G1162G (GGT→GGA) | CIW80_RS25525 | EntS/YbdA MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (60/48); new base A (4/8); total (71/62) |
| Fisher's exact test for biased strand distribution p-value = 2.22e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 136 total aligned reads displayed.
CTGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTGGAT > NZ_CP022686/5043716‑5043993
|
ccgTCCCCGATCCGGATTCCATGGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTTACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGt < 5:280700/138‑1 (MQ=255)
cTGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGt < 3:111253/140‑1 (MQ=255)
cTGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGt < 7:257291/140‑1 (MQ=255)
tCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGCCAGTGCCATCAGCAACGGCGGCCCCGGCACGCAGGTTACCGGCGACGACGCCACCGTCAACAATAACGGTaaa > 5:18222/1‑140 (MQ=11)
tCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTCAACAATAACGGTaaa > 6:507512/1‑140 (MQ=37)
tCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTaaa > 7:202524/1‑140 (MQ=39)
gATGCGGATTCGATGGGCATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAaccac < 1:35567/140‑1 (MQ=255)
gATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCTACGGAGGCACCGGCACGCTGGTTAACGGCGAGGAAGCCACCGTAAACAATAACGGTAAAaccac < 8:723941/140‑1 (MQ=255)
tCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCg > 3:119807/1‑140 (MQ=37)
ccGGATTCCATCGGTATTCAGATCGACGGCGAGAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGAAACGGCGGCACCGGCACGCAGGTTAACGGAGAGGAAGCCACCGTAAACAATAACGGGATAACCACCGt > 3:67405/1‑140 (MQ=11)
ccGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGTGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGt > 2:145027/1‑140 (MQ=37)
ccGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGt > 8:225337/1‑140 (MQ=37)
ccGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTCAACAACGCCGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTAAACAATAACGGCAGCACCACCgg > 1:815488/1‑139 (MQ=11)
gATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGTGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGa < 1:145027/140‑1 (MQ=37)
gATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGa < 6:135754/140‑1 (MQ=37)
ccATGGGAATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACATTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt < 5:502725/140‑1 (MQ=255)
ccATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATggg < 7:6699/140‑2 (MQ=37)
ccATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGGTCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt < 3:396029/140‑1 (MQ=255)
ccATCGGTATTCAGAGCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt < 6:41094/140‑1 (MQ=37)
cATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCCCCGTAAACAATAACGGTAAAACCACCGTTGATGGTc > 2:568584/1‑140 (MQ=37)
cATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGAGAGGAAGCCCCCGTAAACAATAACGGGAGCACCACCGTTGACggaa > 8:180260/1‑138 (MQ=11)
gTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGc > 6:330762/1‑140 (MQ=37)
ttCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCCCCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCg > 1:894920/1‑140 (MQ=37)
ttCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt > 7:133513/1‑131 (MQ=21)
cAGATCGACGGCGCCACGGCGGTCGTGAACAACGACGGTGACAGTGCCATAAGCAACGGCGGCACCGGCACGCAGGTATACGGCTACTAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAc < 3:446230/140‑1 (MQ=11)
cAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAc > 8:78631/1‑140 (MQ=38)
cAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAc < 5:744190/140‑1 (MQ=38)
cAGATCGACGGCGACAACGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAc < 1:258431/140‑1 (MQ=38)
aTCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTTAACAATAACGGTAAAaccac > 1:610922/1‑116 (MQ=25)
aTCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAATGGTAAAACCACCGTTGATGGTCAGGGCTCGACCgg > 8:958852/1‑140 (MQ=255)
aTCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCgg > 6:925807/1‑140 (MQ=40)
cGGCGACAAGGCGGTCGTGAACAACGCCGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGAGAAGAAGCCACCGTAAACAATAACGGCAGCACCACCGTTGAAGGTAAAGCATCCACCGGAACTg > 1:652711/1‑140 (MQ=11)
cGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGTACGGaaa > 2:772665/1‑140 (MQ=255)
aCAAGGCGGTCGTGAACAACGACGGTGACAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGa > 1:458615/1‑112 (MQ=25)
aCAAGGCGGTCGTGAACAACGACGGTGACAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGa < 2:458615/112‑1 (MQ=25)
aaGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGTTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgc < 7:359619/140‑1 (MQ=255)
gcgcTCGTGAACAACGACGGTGACAGTGCCATCAGCCACGGCGGCACCGGAACGCAGGTTAACGGCGACGATGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCggg < 7:830470/140‑1 (MQ=255)
gCGGTCGTCAACAACGACGGTGACAGTGCCATCAGCAAGGGCGGCACCGGCACGCAGGTTAAGGGCGACGAAGCCACGGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCggg < 1:389839/140‑1 (MQ=255)
gTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCTGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGGAAAACCACCGTTGAAGGTCAGGCCTCGACCGGAACTGAAATAGCGGGtaa > 5:370149/1‑140 (MQ=14)
gTGAACAACGCCGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGTACGGAAATCGCGGGtaataa > 4:294111/1‑140 (MQ=255)
gAACCACGACGGCGCCAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGTTAAACCCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAAcg < 2:374143/140‑1 (MQ=14)
acgacgGTGACAGATCCATCAGCAATGGCGGCACCGGAACGGTGTTTAACGGTGATGAAGCGACCGTAAACACTATGTGTAAAACCACCGTTGATGGTCAGGGTTCGACCGGAACTGAAATCGCGGGTAATAACGCggtg < 2:1042618/140‑1 (MQ=11)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg > 1:647213/1‑140 (MQ=255)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg > 5:362186/1‑140 (MQ=255)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGAACAGAAATCGCGGGTAATAACGCggtgg > 5:208690/1‑140 (MQ=255)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGAGAAGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGAGGGTCAGGGATCGACCGGAACTGAAATCGCGGGTAACAACGCggtcg > 2:1043872/1‑138 (MQ=14)
acgGTGACAGTCCCATCCTGTATGGCGGCACCGGAACGCTGTTTACCGGTGACGATGCGACGGAAAACAATATCGGCAAAACCACCGTAGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGgtggtg < 4:187378/140‑1 (MQ=2)
acgGTGACAGAGCCTTCAGCTACGGCGGCACCGGCACGCCCTTTACCGGCGACGATGCGAGCTAAAACAATACCGGAAAAACCTCCGTTGATGGTCAGGGTTCGACCGGAACTGAAATCGCGGGTAATAACGCggtggtt < 7:1003819/140‑2 (MQ=14)
aCAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCg < 1:1036143/81‑1 (MQ=255)
gTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGAc > 7:214667/1‑140 (MQ=255)
atGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGGAAAACCACCGTTGAGGGGAAGGGGTCGACCGGAACTGATATCGAGGGTTAAAACGCCGTCGTGAACCAGGAc > 6:270302/2‑140 (MQ=14)
tGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAGCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACg > 1:106707/1‑140 (MQ=255)
tGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACAGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACg > 7:473122/1‑140 (MQ=255)
tGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTGAACAATAACGGCAAACCCACCGTTGAGGGCCAGGGGTCGAGCGGAACCGAAATCGCGGGTGAGAAAGCGGTCGTCAACAAGGACg > 4:655046/1‑140 (MQ=11)
gCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACgg < 5:270302/140‑1 (MQ=255)
gCCATCAGAGACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACgg < 4:711656/140‑1 (MQ=255)
cATCAGCAACGGCGGCACCGGCACGCTCGTTAACGGCGACGAAGCCACCGTAAACAATACCGGAAAAACCACCGTTGAAGGTCAGGGCGCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCg < 6:774397/140‑1 (MQ=17)
acAGCACAGGCGGCACCGGCACGCAGGTTACCGGCGACGAAGCCACGGTAAACAACATCGGCAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGCCGGCGAg < 6:759006/139‑1 (MQ=17)
cAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGc > 3:554815/1‑140 (MQ=255)
aaCGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGa > 8:94472/1‑140 (MQ=255)
aaCGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGAAACACCACCGTTGAAGGTCATGCGTCGACAGGCACTGAGATAGAGGGTGATAACGCCGTCGTGAACCAGGACGgagaccgcga > 3:483156/1‑134 (MQ=14)
aaCGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGAAACACCACCGTTGAAGGTCAGGCCTCGACAGGCACGGAGATAGCGGGTAAGAACGCGCTGGTGAACAACGACGGAGAGCgggc > 1:1001195/1‑139 (MQ=14)
cggcggCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGATGATGGTCAGGCCTCGACCGGAACTGAAATCGCGGGTAAAAACGCGGTGGTGAACCAGGACGGAGAgctggctg > 4:58787/1‑140 (MQ=17)
gcggcACCGGCACGCAGGTTAACGGCGACGAAGCCACCGGAAAGAATAACGGAAAAACCACCGTTGATGGTCAGGGCTCGAGCGGACGAGAAATCGCGGGTAATAACGCGGGGGTGAGCCAGGACGGGGCGCTGGATGtg > 3:829579/1‑139 (MQ=14)
gcaccggcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGAAAAACCACCGtt > 7:99257/1‑62 (MQ=255)
cgggaagCAGTTTAAGGGCGACGAAGCCACCGTAAACAACAAAGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCTAGCTGGATGTCAgcggcg < 8:207908/134‑1 (MQ=17)
ggcacGCAGTTTACCGGCGACGAAGCGACGGCAAACAATACCGGTAAAACCACCGTTGATGGTCAGGGCGCGACCGGAACTGAAATCGCGGGTAATAACGCGGGGGTGAACCAGGACGGCGAGCTGGATGTCAGcggcgg < 4:249242/140‑1 (MQ=17)
ggcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGcggcgg < 8:214667/140‑1 (MQ=255)
gcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgc > 3:391705/1‑88 (MQ=255)
cGCAGGTTACCGGCGACGAAGCCACCGTAAACAAAACCGGCAAAACCACCGTTGACGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCggtggt < 4:133777/140‑1 (MQ=14)
cctgTTAACGGGGACGAAGCCACCGTAAACAATACCGGTAAAACCACCGTTGAGGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGGGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 6:87615/137‑1 (MQ=17)
ccggTTAACGGCGACGACGCCACCTTAAACAATAACGCTAAAACCACCGTTGATGGTCAGGCCTCGCCCGGATCTGAAATCGCGGATAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGGGGTCa < 7:927018/138‑1 (MQ=17)
ggTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACg < 2:250183/140‑1 (MQ=255)
ttAACGGCGACGATGCCACCGTAAACAATATCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACggg < 4:939427/140‑1 (MQ=255)
ttAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACggg < 8:1022516/140‑1 (MQ=255)
cgacgaAGCCACCGTAAACAATAACTGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGata < 1:820224/140‑1 (MQ=255)
cgacgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGata < 7:94472/140‑1 (MQ=255)
cgacgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAAAAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCCCGGCTTTGatt > 3:338582/1‑139 (MQ=17)
atgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGTTTGatata > 3:166713/3‑139 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAACCCACCGTTGATGGTCAGGGCTCGCCCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGACCCAGGACGGAGCGCTGGATGTCAGCGGCGGAGGTCACGGGCTTGataag > 7:529919/1‑138 (MQ=14)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcg < 1:70919/69‑1 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGCGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATc > 2:148578/1‑140 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGCGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATc > 5:977630/1‑140 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGATTGatatg > 7:37536/1‑139 (MQ=255)
ccACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGc < 2:797363/140‑1 (MQ=255)
cGTAAACAATAACGGTATAACCACCGTTGATGGTCAGGGCTCGACCGGCACTGACATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGAGAGCGGGCGTTCAGCGGCGGGGGTCTCGGGGTTGATAGCACGGGCgccc > 5:418362/1‑137 (MQ=17)
gaaaaCAATAGCGGAAATACCACCGTTGACGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAg < 4:333172/138‑1 (MQ=14)
aaaCAATACCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAgcg < 2:5426/140‑1 (MQ=255)
caaaagcGGAAATACCACCGTTGTAGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTTGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTTGTCACGGGGTTGATATCACCGGCGACAGCGCaa < 8:834286/134‑1 (MQ=14)
cAATACCGGCAAAACCACCGTAGATGGTCAGGGCTCGACCGGAACCGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGGTGATATCACCGGCGACAGCGCaa < 7:215519/140‑1 (MQ=14)
aTACCGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACg < 4:731905/140‑1 (MQ=255)
tAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGTGTAATAACTCGGTGGTGAGCAAGGACGGCGAGCTTGATGTATGCGGAGGTGGTCACGGGGTTGATATCACCGGCGCGTGCGAAACgg > 6:541986/1‑140 (MQ=14)
tAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACgg > 4:218754/1‑140 (MQ=255)
tAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGAGAACCAGGACGGAAAGCTGGATGTCAGCGGCGGAGGACACGGGTTTGATATCACCGGCGACAGCGCTACgg > 2:406691/1‑140 (MQ=14)
tAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAACAACGCGGTGGTGAACCAGGACGGCGAGCTGGAt < 2:739562/91‑1 (MQ=255)
cGGCAAAACCACCGTTGAAGGGCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGGGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTgg < 7:191118/140‑1 (MQ=255)
ggTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGATCCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTGGa > 5:879489/1‑140 (MQ=255)
gTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg > 4:609666/1‑63 (MQ=255)
gTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCCGTGGTGAAACAGGACGGCGAGGAGGATGTCAGCGGCGGTGTTCACGGGGTTGATATCACCGGCGACAGCGCACCGGTGGAt > 7:891849/1‑140 (MQ=17)
gTAAAACCACCGTTGATGGTAAGGGCTCGACCGGAACTGAAATCTCGGGTAATAACGCGGTGGTGCAACAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGGGGAt > 7:891848/1‑140 (MQ=17)
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CTGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTGGAT > NZ_CP022686/5043716‑5043993
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
