Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
5,043,855 |
T→A |
15.5% |
G1162G (GGT→GGA) |
CIW80_RS25525 → |
EntS/YbdA MFS transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 5,043,855 | 0 | T | A | 15.5%
| 233.6
/ 5.7
| 121 | G1162G (GGT→GGA) | CIW80_RS25525 | EntS/YbdA MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (38/58); new base A (5/11); total (47/74) |
| Fisher's exact test for biased strand distribution p-value = 5.90e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 122 total aligned reads displayed.
CTGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTGGAT > NZ_CP022686/5043716‑5043993
|
cTGTCACCGATCCGGATTCCATCGGTATTCAGAGCGACGGCGACACGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGt < 3:81949/140‑1 (MQ=255)
ccGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAacc < 4:688266/140‑1 (MQ=37)
cGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGACCAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGACGCCACCGGAAACAATAACGGGTAAac > 5:37955/1‑138 (MQ=11)
gATGCGGATTCCATCGGCATTCAGATCGCCGGCGACACGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAaccac < 3:121598/140‑1 (MQ=255)
gATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAaccac < 3:126083/140‑1 (MQ=37)
gATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAaccac < 2:68858/140‑1 (MQ=37)
gATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAaccac < 8:284106/140‑1 (MQ=37)
gATCCGGATTCCATCGGTATTCAGATAGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAaccac < 2:748568/140‑1 (MQ=37)
cGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGTCGGCACCGGCATTCAGGTTAACGGCGACGAATCCATCGTAAACAATAACGGTAAAACCACCg < 5:86696/138‑1 (MQ=11)
gATTCGATGTGTCTTCAGTTCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACATTGCCATCAGCTACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGa < 8:684851/140‑1 (MQ=11)
gATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCTGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGtt < 5:707966/138‑1 (MQ=37)
ccATCGGTCTTCAGCTCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt < 4:792648/140‑1 (MQ=255)
ccATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATg < 6:440638/138‑1 (MQ=37)
cATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATgg > 6:749631/1‑138 (MQ=37)
gTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGc < 4:403898/140‑1 (MQ=37)
gTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGc < 1:598277/140‑1 (MQ=37)
gTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGc > 7:261670/1‑140 (MQ=21)
aTCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTGGATGGTCAGGGCTCGAACgg > 8:516107/1‑140 (MQ=255)
cGACGGCGACAAGGCGGTCGTGAACAACGACGGTGCCAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCgg > 5:634081/1‑138 (MQ=255)
cGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGAGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGAAGGTCAGGGCTCGACAGGAAcag > 4:491494/1‑138 (MQ=255)
cGACATGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGAACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGATGATGGTCAGGGCTCGACCGGAACTGaaa < 8:101632/140‑1 (MQ=255)
aCAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATc > 2:363090/1‑140 (MQ=255)
aCAAGGCGGTCGTGAACAACGACGGTGACAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTTACCAATAACGGAAGAACCACCGTTGAACGAAAGGGATCGACCGGAACGGAGAta > 1:469417/1‑139 (MQ=11)
cAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAAt < 6:528566/138‑1 (MQ=255)
cAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcg < 4:400202/140‑1 (MQ=255)
aaGGCGGTCGTTAAGAACGCCGGTGACAGTGCGATCTGCTAGGGCGGCAGCGGAACGCAGTTTATGGGCGACGATGCCACGGTAAACAATACGGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgc < 2:565886/140‑1 (MQ=14)
aaGGCGGTCGTGAACAACGACGGTGACACTGCCATCCGCAACGGCGGCTCCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATc < 6:346321/138‑1 (MQ=255)
aGGCGGTCGTGAACATCGACGGTGACAGTGCCATCTGCAACGGCGGCACCGGCACGCATGTTAACGGCTACGAAGCCACCGTAAACAATAACGGTAATACCTCCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcg < 5:167962/138‑1 (MQ=14)
aGGCCGTCGTGAACAACGACGGTGACAGATCCATCCTCCACGGCGGCACCGGCACGCTGGTTAACGGCGACGAAGCCACCGTAAACAATACCGGCAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgcg < 8:74411/140‑1 (MQ=14)
gCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgcg < 6:132504/138‑1 (MQ=255)
cGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGt < 1:563409/140‑1 (MQ=255)
gTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGtaat < 6:446657/138‑1 (MQ=255)
gAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCTCGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAAcg < 7:519204/140‑1 (MQ=255)
aacaacGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACTCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAAcgc < 1:313267/140‑1 (MQ=255)
cgacgGTGACAGTGCCATCAGCATCGGCGGCACCGGCACGCAGGTTAACGGGGACGAAGCCACCGTAAACAATAACGGTAAAACCGCCGTTGATGGTCAGGGCTCGACCGGAACTGATATCGCGGGTAATAATGCggt < 5:881802/138‑1 (MQ=14)
cgacgGTGACAGCCCGATCAGGAAGGGCGGCACCGGCACGCGGGTTACGGGAGACGATGCCACGGTCAACAATACCGGAAATACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg < 2:189286/140‑1 (MQ=14)
cgacgGTGACAGCACGATCATCAACGGCGGCACCGGCACCCTGTTTACCGGCGACGAAGCCACCGGCAACAAAACCGGCAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg < 8:419003/140‑1 (MQ=14)
cgacgGTGACAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTCAACAATAACGGAACAACCACCGTTGATGGACAGGGCTCCACCGGAACAGAAATCAACGGTAACAACGCgatgg > 8:217299/1‑140 (MQ=14)
cgacgGGGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTACCGGCGACGAAGCCACCGAAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg < 8:119288/140‑1 (MQ=255)
acgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTTAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGAACTGAAATCGCGGGTAATAACGCggtgg > 6:72834/1‑138 (MQ=255)
acgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAGCGGAACTGAAATCGCGGGTAATAACGCggagg > 6:248277/1‑138 (MQ=255)
acgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGAGGGTCAGGAGTCGACCGGAACTGAAATCTCGGGTTATAACGCcgtcg > 5:718702/1‑136 (MQ=14)
acgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGATGATGGTCAGGGCTCGACCGGAACTGATATCGCGGGTAATAACGCggtgg > 5:716957/1‑138 (MQ=255)
acgGTGACAGGGCCACCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGAGGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGgtggtg < 1:140593/140‑1 (MQ=255)
acgGTGACAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGCAAAACCACCGTTGACGGGAAGGGATCGACCGGAACCGATATAGCCGGGAATAACGCGatcgtg > 1:676341/1‑140 (MQ=11)
ggTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACCGCGACCAAGCCACCGAAAACAATAACGGAAACAACACCGTTGATGGTCAGTGATCGCCCGGAACTGAAATCTCCGGTAACAAAGCcctggtc > 6:821105/1‑137 (MQ=14)
ggTGACAGAGCCATCAGGAACGGCGGCACCGGCACGCTGCTTACCGGCGACGAAGCCACGGTAAACAATACCGGTAAAACCACCGTAGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGgtggtg < 6:738813/138‑1 (MQ=14)
gTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAc > 1:41673/1‑140 (MQ=255)
gTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAAGAACGCGGTGGTGAAc > 1:459380/1‑140 (MQ=255)
gTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGAc > 2:93813/1‑140 (MQ=255)
tGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACg > 3:449497/1‑140 (MQ=255)
gcgaTCAGCTAGTGCGGCACCGGAACGAGGTTTACCGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACgg < 3:904203/137‑1 (MQ=14)
gCCATCAGCCACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATCTCGGTAAAACCCCCGGTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACgg < 7:630520/140‑1 (MQ=14)
ccATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt < 2:706581/83‑1 (MQ=255)
ccATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt > 1:706581/1‑83 (MQ=255)
ccATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACg > 5:477989/1‑138 (MQ=255)
aTCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGTACTGAACTCGCGGGTAATAACGCGGTGGTGAAGCAGGCCggg > 6:415817/1‑137 (MQ=255)
ccAGCAACGGCGGCACCGGCACGCCGGTTAACGGCGACGAAGCCACCGCAAACAAAAACGGCAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCg < 6:836277/137‑1 (MQ=255)
gtaaCGGCGGCACCGGAACGCTGTTTAACGGCGACGAAGCCACCGTAAACAATAAGGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTg < 2:469417/138‑1 (MQ=17)
cAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAACCCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGtaataa > 6:507621/1‑111 (MQ=255)
cAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGtaataa < 5:507621/111‑1 (MQ=255)
atggcggcACCGGAACGCCCGTTAAGGGTGACGAAGCGACGGAAAACAACAGCGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGAt < 4:928586/138‑1 (MQ=11)
aCGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTCAACAATACCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGAt < 4:117734/140‑1 (MQ=255)
cggcaccggcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCg > 2:867185/1‑62 (MQ=255)
cggcaccggcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCg < 1:867185/62‑1 (MQ=255)
accggcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGTACGGAAATCGCGGGTAATAACGCGGTGGTGAAACAGGACGGAACGCTGGCTGTctcc > 6:492199/1‑135 (MQ=11)
ggcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAgcggc < 5:749631/138‑1 (MQ=255)
gcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg < 7:669097/105‑1 (MQ=255)
gcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg > 8:669097/1‑105 (MQ=255)
ccgtgtAACGGCGCCGAAGCCACCGCAAACAATACCGGTAAAACCACCGTATATGGTCCGGGCTCGACAGTAACAGAAATCGCGGGTAATCCCGCGGTGGTGAACCCGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 4:192254/135‑1 (MQ=17)
ccggTTAAGGGGGACGAAGCCACGGTAAACAAAACAGGCAATACCACCGTAGAGGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGGGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 7:223982/138‑1 (MQ=11)
cAGTTTAACGGCGACGAAGCCACCTCAAACAATAACGGAAACACCACCGTTTATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 8:44768/140‑1 (MQ=17)
cAGGTTAACGGCGACGAAGCCACCGTAAACAATACCGGAAAAACCACCGTTGATGGTCAGGGCTCGCCCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 3:288746/140‑1 (MQ=255)
cAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAc < 4:115294/68‑1 (MQ=255)
cAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAc > 3:115294/1‑68 (MQ=255)
cAGGTTAACGGCGACGAAGCCACCGAAAACATAACCGGTAAAACCACCGGTGAGAGTCCGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGGGAACCAGGACGGCTAGCTGGATGTGAGCGGCggtggt < 5:49110/138‑1 (MQ=17)
aCGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGCCCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGtt > 7:812324/1‑140 (MQ=255)
cgacgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGa < 6:477989/138‑1 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGCGCTGGATGTCAGCGGCGGAGGTCACGGGGTTGATATc > 3:703690/1‑140 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGata > 6:458342/1‑138 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGAGAGCGGGATGTCAGCGGCGGCGGTCACGGCATTGatata > 2:15327/1‑139 (MQ=14)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACAGGAACTGAAATCGCGGGTAATAACGCGTTGGTGAACCAGGACGGAGAGCTGGATGTCAGCGTCTGCGGTCACGGCTTTGatata > 7:422817/1‑139 (MQ=14)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGTACTGAAATCGCGGGTAATAACGCGGTGGTGAAGCAGGACGGCTAGCTGGATGTCAGCGGCGGTGGTCACGTGATTGatata > 1:61368/1‑139 (MQ=14)
acgaAGCCACCGAAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTGAGCGGCGGTGGTCACGGGGTTGATATc < 4:940736/140‑1 (MQ=255)
ccACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAACAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGc > 8:556394/1‑140 (MQ=255)
acggcaaaCAAAAGCGGCAAAACCACCGTAGACGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGa < 4:339397/135‑1 (MQ=11)
aCCGTAAACAATACCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGa < 2:461415/140‑1 (MQ=255)
aCCGTAAACAATAACGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGGGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGa < 8:775753/140‑1 (MQ=255)
cGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACa > 1:918404/1‑140 (MQ=255)
aaaCAATAACGGAAAAACCACCGTTGAGGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAgcg < 1:9364/140‑1 (MQ=255)
aaaCAAGATCGGTAATACCACCGTTGATGGTCAGGGATCGACCGGAACTGAACTCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAgcg < 1:884666/140‑1 (MQ=14)
aaCAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGAGAGCTGGATGTCAGAGGCGGTGGTCACGGGATTGATATCACAGGAGAAAgcgc > 7:162770/1‑140 (MQ=14)
cAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCaa < 2:41673/140‑1 (MQ=255)
cAATAACGGAAATACCACCGTTGATGGTCAGGGGTCGACCGGAACTGAAATGGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCACGGGGTTGATATCACCGGCGACAGCGCaa < 4:235391/140‑1 (MQ=14)
cagagcGGAAATACCACCGTTGATGTGCAGGGCTCGACCGTAACTGAATTCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTGATCGGCGGTGGTCACGGGTTTGATATCACCGGCGACAGCGCAAc < 7:739177/135‑1 (MQ=11)
aaCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGGAATAAAGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCACCgtg > 2:790198/1‑138 (MQ=255)
ccGGTAAAACCACCGTTGATGGGCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACgg < 5:523543/137‑1 (MQ=255)
aCGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTg < 2:175030/140‑1 (MQ=255)
cGGTAAAACCACCGTTGAAGGTCAGGACTCGACCTGACCAGAAATCGCGTGTAAATACGCGGTGGTGAAACATAACGGAGATCTGGATGTAAGCGGCAGAAGTCAAGGGATTGATATCACCGGCGACAGCGCTACGGTgg > 8:499371/1‑140 (MQ=2)
gTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGAGGTCACGGCATTGATATCACTGGAGATAGCGCCACTGtcata > 2:275641/1‑136 (MQ=11)
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CTGTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTGGAT > NZ_CP022686/5043716‑5043993
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
