Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
5,043,855 |
T→A |
13.6% |
G1162G (GGT→GGA) |
CIW80_RS25525 → |
EntS/YbdA MFS transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 5,043,855 | 0 | T | A | 13.6%
| 262.7
/ 3.0
| 136 | G1162G (GGT→GGA) | CIW80_RS25525 | EntS/YbdA MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (56/55); new base A (5/9); total (64/72) |
| Fisher's exact test for biased strand distribution p-value = 3.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 137 total aligned reads displayed.
GTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTGGAT > NZ_CP022686/5043718‑5043993
|
gTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCTTTCGTGAACAACGTCGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAAAGGCGACGAAGCCACCGTAAACAATAACGGt < 4:216092/138‑1 (MQ=255)
tCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTaaa > 6:193122/1‑140 (MQ=39)
ccggATGCGGATTCGATTGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAac < 2:201010/137‑1 (MQ=255)
cccGATGCGGATTCCATGGGAATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTaaa < 4:1035013/137‑1 (MQ=255)
aCCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCCGGTTAACGGCGAAGAAGCCACCGTAAACAATAACGGTAAAac > 7:688309/1‑140 (MQ=21)
ccGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAacc < 1:423986/140‑1 (MQ=37)
gATGCGGATTCCATGGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACATTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAacc < 4:625199/138‑1 (MQ=255)
cgtaTTCCTTCGGTATTCAGATCGACGGCGACAAGGCGGTCGTTAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGtt < 1:916391/137‑1 (MQ=255)
cGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCCCCGGCACGCAGGTTAACGGCGACGACGCCACCGTAAACAATAACGGTAAAaccaccc > 3:63781/1‑137 (MQ=255)
ggATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGt < 3:891294/138‑1 (MQ=37)
ggATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTg < 8:284998/140‑1 (MQ=37)
ccttCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGt < 1:184009/137‑1 (MQ=37)
cATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGCAGCCACCGTAAACAATAACGGAAAAACCACCGTTGAAgg > 3:553575/1‑138 (MQ=255)
ggTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGTCGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAg > 4:70579/1‑138 (MQ=37)
gTATTCAGCTCGACGGCGACAAGGCGGTAGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAGGAAGCCACCGTAAACAATAACGGCAACACCACCGTTGAAggaaaagat > 1:1033534/1‑133 (MQ=11)
cAGATCGACGGCGACAAGGTGGTCGTGAACAACGACGGTTACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAc < 1:574668/140‑1 (MQ=255)
aTCGACGGCGACAAGGCGGTCGTGAACAACGCCGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTACCGGCGACGCAGCCCCCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGCCCgg > 7:1025753/1‑140 (MQ=14)
cGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGAGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATTGTCAGGGCTCGAACgg > 4:270181/1‑138 (MQ=255)
gACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAAc > 7:690297/1‑140 (MQ=255)
aCGGCGACAAGGCGGTCGTGAACAACGCCGGTGACAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTTAACAATAACGGTAAAACCACCGGTGAGGGGCAGGGGTCCACCGGAAcg > 2:937059/1‑139 (MQ=14)
cGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTTAACAATAACGGTAAAACCACCGtt > 4:662965/1‑115 (MQ=25)
cGACAAGGCGGTCGTGAACAACGACGGTGCCAGGGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGCAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGCCCGGAACTGaaa > 5:74010/1‑140 (MQ=255)
cGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGaaa > 2:373749/1‑140 (MQ=255)
aCAAGGCGGTCGTGAACAACGACGGTGACAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGGAGAACCACCGTTGAAGGTAAGGGCTCGACCGGAACAGAAATc > 8:803165/1‑140 (MQ=14)
cAAGGCGGTCGTGAACAACGACGGTGACATTTCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAAt < 4:390218/138‑1 (MQ=255)
aaGGCGGTCGTGCACAACGACGGTGACAGCGCCATCAGACACGGCGGCACCGGCACGCAGTTTAACGGCGACGAAGCCACCGTAAACAATAGCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATcgc < 6:491021/140‑1 (MQ=14)
ggCGGTCGTGAACAACGCCGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACGGAAATCGCgg > 8:1070657/1‑140 (MQ=255)
gTCGTGAACAAGGACGGTGTCAGTGCCATCACGCACTGGTGAACCGGCTCGCAGGTTAACGGCGACGAAGCCACCGCAAACAATATCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGt < 3:371242/138‑1 (MQ=14)
tCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTAAACAATAAAGGTAAAACCACCGTTGCTGGTCAGGGCACGACCGGAACTGAAATCGCGGGtaat > 7:57267/1‑140 (MQ=255)
tCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGAAGAAGCCACCGTAAACAATAAAGGAAAAACCACCGTTGAAGGTAATGTGTCCACCGGAACTGAAATAGCCGGtt > 3:1085236/1‑137 (MQ=14)
tGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGGAAAACCACCGTTGAAGGTAATGGGTCCACAGGAACTGAGATAACCGGtaataaa > 7:388962/1‑139 (MQ=14)
aacaacGACGGTGACAATGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGCAGCCACCGTGAACAATAACGGAAAAACCACCGTTGAAGGGCAGGGATCGACGGGAACAGAAATCACGGGTTAAAAcgc > 7:900522/1‑140 (MQ=11)
acgacgGTGACAGGTCCATCCTCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGAAAACAATACCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtg < 7:151112/140‑1 (MQ=14)
cgacgGTGACAGTTCCATCAGGTCGGGCGGCACCGGCACGCAGCTTAACGGGGACGAAGCCACCGTAAACAATAAGGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg < 2:941252/140‑1 (MQ=14)
cgacgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACAACCGTTGATGGTCAGGGCTAGACCGGAACTGAAATCGCGGGTAATAACGCggtgg > 8:848874/1‑140 (MQ=255)
cgacgGTGACAGCGCCATCCTTCACGGCGGCACCGGCACGCAGTTTAACGGCGACGAAGCCACCGAAAACAATATCGGAAAAACCACCGTTGACGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg < 7:80650/140‑1 (MQ=11)
acgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCg > 3:674920/1‑104 (MQ=40)
acgGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCggtgg > 3:988647/1‑138 (MQ=255)
gTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAc > 5:300033/1‑140 (MQ=255)
aCAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGAACAGAAATCGCGGGTAATAACGCGGTGGTGAAACAg > 8:1060289/1‑140 (MQ=255)
tGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTGAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAACGGAACGGAAATCGCGGGTAATAACGCGGTGGTGAAGCAGGa > 4:602259/1‑138 (MQ=255)
gCCATCAGCCAGGGCGGCACCGGCACGCAGTTTAACGGCGACGAAGCCACCGAAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACgg < 2:280275/140‑1 (MQ=255)
gCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACgg < 6:873702/140‑1 (MQ=255)
cccATCATCTACGGCGGCACCGGCACGCCGGTTAACGGCGAAGAAGCCACCGTCAACAATACCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACgg < 8:63828/139‑1 (MQ=14)
aTCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGc > 3:1161924/1‑138 (MQ=255)
aTCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAGATCGAGGGTAATAACGCGGTGGTGAACCAGGACGGCgc > 1:777065/1‑139 (MQ=255)
tCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAg < 5:940836/140‑1 (MQ=255)
cAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTaa < 8:277645/63‑1 (MQ=40)
cAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTaa > 7:277645/1‑63 (MQ=40)
cAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAACCCACCGTTGATGGGCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTgg < 8:35050/140‑1 (MQ=255)
cggcggCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGa > 3:1024083/1‑138 (MQ=255)
cggcggCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGAtt > 8:11100/1‑139 (MQ=255)
gtcacGCTGGTTAACGGCGTCGAAGCCACCGTAAACAAAAACTGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGcggcgg < 5:63770/138‑1 (MQ=17)
ggcacGCTCTTTACCGGCGACGAAGCCACCGTAAACAATACCGGAAAAACCCCCGTAGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGcggcgg < 7:727632/140‑1 (MQ=14)
ggcacGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGCGCTGGATGTCAGcggcgg > 2:718027/1‑140 (MQ=255)
gcacGCAGGGTAACGGCGCCGCAGCCACCGGAAACAATAACGTTAACACCCCCGTTGATGGGCAGGGCTCGACCGGAACGGACATCGCGTGTAAAAACGCGGTGGTGAACCAGGACGGCGCGCTGTCTGTGAGaggcggg > 6:549290/1‑139 (MQ=17)
ctctttACCGGCGACGAAGCCACCGTAAACAATACCGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 1:553579/136‑1 (MQ=255)
cAGTTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTTGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 2:762496/140‑1 (MQ=255)
cAGGTTAAGGGCGACGAAGCCACGGAAAACAATACCGGCAAAACCACCGTTGATGGTCAGGGCGCGACCGGAACTGAAATCGCGGGTAATACCGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 8:692983/140‑1 (MQ=17)
cAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGCAAAACCACCGTTGATGGTCAGGGCTCGCCCGGAACTTAACTCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 1:310620/140‑1 (MQ=255)
gtttAAGGGTGATGATGCAACGGAAAACAATAACGTTAAAACCACCGTAGACGGGCAGTGCTCGACCGGAACTTAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCa < 3:1051709/136‑1 (MQ=11)
ggTTAACGGCGACGAAGCCACCGAAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATACCGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACg < 8:41180/140‑1 (MQ=255)
ctttAAGGGTGATGATGCTACCGTCAACAAAATTGGTAAAACCACCGTAGAAGGTCAGGGGTCGACCGGAACTGATATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACg < 8:484414/138‑1 (MQ=11)
gTTAACGGCGACGCAGCCACCGTAAACAATAACGGTAAAACCACCGGGGATGGTCAGGGCTCGACCGGTACTGAAATCGCGGGTAATACCGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACgg > 6:672544/1‑140 (MQ=17)
gTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGAGCGGTACCGAAATcgc > 5:964039/1‑80 (MQ=11)
gTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACgg > 6:999030/1‑140 (MQ=255)
tacgggCGATGATGCGACGGCAAACAACACCGGAAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACgggg < 8:27849/136‑1 (MQ=1)
tAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGCGCTGGATGTCAGCGGCGGAGGTCACgg > 3:1158669/1‑138 (MQ=255)
aaCGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAGCAGGACGGAGAGCTGGATGTCAGCGGCGGTGGTCACgggtt > 8:546881/1‑138 (MQ=255)
aaCGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAAGAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGAGGTCACggctg > 6:614785/1‑137 (MQ=255)
cgacgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCGCGACCGGAACTGAAAGCGCGGGTAATAACGCGGTGGGGAAACAGGACGGACCGCTGGATGTCAGCGGAGGGGGTCACGGGTTTGata > 7:892658/1‑140 (MQ=14)
acgaAGCCACCGTTAACAATAACGGTAAAACCACCGTTg < 8:695603/39‑1 (MQ=255)
acgaAGCCACCGTAAACAATAACGTTAAAACCACCGTTGAAGGTCAGGGCTCGACCGGAACTGAAATAAAGGGTTATAACGCGGTGGTCAAGAACGACGGCGAGCGCGCTGTCAGCGGCGTGGGTCACTGGGTGGATATc > 6:379237/1‑140 (MQ=17)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTg < 8:695610/39‑1 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTg > 7:695603/1‑39 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTg > 7:695610/1‑39 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAACTCGCGGGTAATAACGCGGTGGTGACCCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATc > 7:625204/1‑140 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATc > 2:454162/1‑140 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGAGGTCACGGGATTGATATc > 7:267486/1‑140 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAACAGGACGGGGAGCTGGATGTCAGCGGCGGTGGTCACGGGTTTGatata > 5:939080/1‑139 (MQ=255)
acgaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACGGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGGGAGCTGGATGTCAGCGGCGGGGGTCACGGGGTTGATATc > 7:838095/1‑140 (MQ=255)
gaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATg < 4:116036/40‑1 (MQ=40)
gaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATg > 3:116036/1‑40 (MQ=40)
gaAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGCGCTGGATGTCAGCGGCGGGGGGCACGGGGTTGATATc > 3:862550/1‑138 (MQ=255)
ccACCGCCAACAAAACCGGCAAAACCACCGTAGACGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGc < 2:874964/140‑1 (MQ=14)
aCCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGa < 5:326152/140‑1 (MQ=255)
aCCGTAAACAAAAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGa < 7:803165/140‑1 (MQ=255)
aCCGAAAACAATACCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGa < 1:1049964/140‑1 (MQ=255)
caaCAAAAGCGGCAATACCACCGTTGATGGGCAGGGCTCGACCGGAACTGAAATCGCGGGTAACAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAgcg < 6:220537/139‑1 (MQ=11)
caaaaccGGAAAAACCACCGTTGACGGTCAGGGCGCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAgcgc < 3:223993/132‑1 (MQ=14)
aTAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACg < 1:373749/140‑1 (MQ=255)
tAACGGTAAAACCACCGTTGATGGTCAGGGGTCGACCGGAACTGAAATCGCGGGTAATAACTCGGTGGTGAACCAGGGCGGGAAGCTGGGTGTCAGCGGCGGGGCTCCCGGGGTTGATATAACCGGCGACAGCGCGACgg > 6:817664/1‑140 (MQ=14)
tAACGGTAAAACCACCGTTGATGGTCAGGGCTCGCCCGGAACTGAAATCGCGGGTAATAACGCGGTGGAGACCCAGGCCGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACgg > 7:518926/1‑140 (MQ=255)
aaCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGATCGAGGACGGCGCTCTGGAGGACCGCGGCTGTGGTCACGGGGGTGATATCACCGGCGAGAGCGCAAAGGt > 5:21979/1‑140 (MQ=17)
aaCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGGGCGCTGGATCACATCGCCGGGGGACACGGAGTTCACATCACCGGAGAAAGCGCCACggg > 5:808703/1‑139 (MQ=14)
aaCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGt > 2:1115854/1‑140 (MQ=255)
ccGGAAAAACCACCGTTGATGGTCAGGGATCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGTTTGATATCACCGGCGACAGCGCAACGGTg < 1:90895/139‑1 (MQ=255)
aCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACgg > 3:714738/1‑138 (MQ=255)
aCGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTg < 7:11100/140‑1 (MQ=255)
gTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAAGCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTGGaa > 2:355855/1‑139 (MQ=255)
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GTCACCGATCCGGATTCCATCGGTATTCAGATCGACGGCGACAAGGCGGTCGTGAACAACGACGGTGACAGTGCCATCAGCAACGGCGGCACCGGCACGCAGGTTAACGGCGACGAAGCCACCGTAAACAATAACGGTAAAACCACCGTTGATGGTCAGGGCTCGACCGGAACTGAAATCGCGGGTAATAACGCGGTGGTGAACCAGGACGGCGAGCTGGATGTCAGCGGCGGTGGTCACGGGGTTGATATCACCGGCGACAGCGCAACGGTGGAT > NZ_CP022686/5043718‑5043993
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
