Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,265,096 |
G→T |
13.7% |
A73E (GCA→GAA) |
ytfJ ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,265,096 | 0 | G | T | 13.7%
| 361.6
/ 9.0
| 168 | A73E (GCA→GAA) | ytfJ | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base G (58/81); new base T (27/2); total (85/83) |
| Fisher's exact test for biased strand distribution p-value = 1.97e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 172 total aligned reads displayed.
ACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAATCGGCGGCACTCGCT > NZ_CP022686/3264957‑3265234
|
aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg < 2:951204/140‑1 (MQ=255)
aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg < 4:236769/140‑1 (MQ=255)
aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg < 4:905127/140‑1 (MQ=255)
ctctCCAGACTGCTGCGCACAAACATCCCTGCTCCATGAATCGCGTCGTCGGTTATAACAATGTAGCTGGTCTGGGAAGGATCGTGCGGTAACTTCGCTGATTTAAGCGCTACAATCAGCGTCCAGTTTTTCTCTTTTGc > 8:660233/1‑140 (MQ=255)
tcCAGACTGCTGCGCACAAACCTCCCTGACCCCGGAAGCGCGTCGGCGGTGTGAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTACTCGCGTCAATCAGCGTCGCGTTTTTCTAGTTTgaccc > 6:769322/1‑136 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGCACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTACCTTCGCTGATTTAATCGCTTCAATCAGCCTCGCGGGTTTCTCTTTTGAaga > 7:447400/1‑140 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGCACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTGTAGTTTGCagg > 2:253731/1‑139 (MQ=255)
tcCAGACTGCTGCGCACAAACATCCCTGCACCCGGAATCGCGTCGTCGGTGATAACAATGGTGGTGGTCTCGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTAGCGTTATTCTCTATTTCata > 4:204193/1‑138 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 3:933407/140‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 1:737098/140‑1 (MQ=255)
ctgcagCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 2:850062/140‑1 (MQ=255)
gctgcGCACAACCATCCCTGAACCCGGACTCGCGTCGTCGGTGTTAAGAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGATTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 5:15624/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCTGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 7:742728/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 2:198503/140‑1 (MQ=255)
ctgcGCACCAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGAGGTGCGAcc > 4:46381/1‑140 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTATTTTGCAGAGGTGCGGcc > 2:35222/1‑140 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc > 1:546022/1‑140 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTGCAGAGGTGCGTcc > 7:265880/1‑140 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTGGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGCGGTGCGAccc > 2:904655/1‑139 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTATCGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCATCGTCGCGGTTTTGTCTTTTTCAGAGGTGCGGCCa > 2:759838/1‑140 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAccc > 2:786245/1‑139 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGAACGTGCGGAAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTGAAGAGGAGCGcccc > 7:668616/1‑139 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 6:14516/140‑1 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 3:861617/140‑1 (MQ=255)
ggacaAACTTCCCTTAACCAGGAATCGCGTCGTGGGTGTTATCAATGGTGGTGGGCTGCTAACGATCGTGCGGTAACTTCGCTGATGTAATCGCTTCAATCTGTGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 7:52637/138‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 5:762554/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 1:441635/140‑1 (MQ=255)
aaaCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTAAGATGTGCCTCCAGCAatat > 2:99933/1‑140 (MQ=255)
aCATCCCTGAACCCGGAATCGAGTCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGTTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTATTTCTCGTTTGAAGAGGTGCGACCACGAAAATGt > 7:692769/1‑140 (MQ=255)
tCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGc > 4:69585/1‑140 (MQ=255)
cccTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGGTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa < 1:3428/140‑1 (MQ=255)
gAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTTCGGTAACTTCGCTGATTTAATCGCTTCAATAAGCGACGCGGTTTTATAGTTTTCATACCTGCGCCCCACAATAAGTTGCAggaa > 1:644217/1‑137 (MQ=255)
gAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTGTTTTGCAGAGGGGCGGCCAGCAATATTTTGCAGTAc > 5:622682/1‑140 (MQ=255)
gAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGGGACCAGCAAAATGTTTCAGTAc > 5:702553/1‑140 (MQ=255)
gAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCAGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTTGAGAGGTGCGCCCAGCAATATTTTGCAGTaa > 1:957614/1‑139 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCTCTTTTTTATCTTTTGCAGAGGTGCGCCCAGCAAAATTTTTCAGGACACGcgc > 6:868996/1‑138 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTAATTTTCAGAGTTAGGACCAGCATAATGTTGGAGTACtagaaa > 3:822576/1‑135 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc > 2:430067/1‑115 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 1:430067/115‑1 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTATTTTGGAGCGGTGCGCCCAGCAATATGTTGCTGTACTccgcc > 3:383302/1‑136 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATTTTGCAGTACTCGCACtt > 8:238684/1‑140 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 5:300165/140‑1 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 1:99933/140‑1 (MQ=255)
aaTCGCGTCGGCGGTGGTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGGGCGACCAGCAATATGTTGCAGTACTCGCACtt < 3:190102/140‑1 (MQ=255)
tCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt < 2:419079/140‑1 (MQ=255)
tCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt < 5:861382/140‑1 (MQ=255)
tCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt < 5:466539/140‑1 (MQ=255)
gtgtTAACAATGGGGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGGCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTg < 3:417823/140‑1 (MQ=255)
ttcaCAATGGTGGTGGGCTGGGAACGCGCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGGGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCCCTAACTgcgc < 6:39316/137‑1 (MQ=255)
ttAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgc < 1:203994/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 4:1044/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 2:227853/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 2:580088/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 3:427026/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 2:877909/140‑1 (MQ=255)
tAAAAATGCGGGTGGTCTGGTATCGATCTTGCGGTAACTTCGCTGAGTTAATAGATTCAATCATCGTCGCGTTTTTCTCTTATGCAGAGGAGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 4:79552/140‑1 (MQ=255)
aaCAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGCGGTGCGACCCCCAATAAGTTTCAGTACTCGCACTTTTACCCAAAAATgcgcgc > 5:549110/1‑140 (MQ=255)
aaCAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTGTTTTGCAGAGGTGCGACCAGCAATATTTTTCAGTACTCGCACTTTTACCACTAACAgcgcgg > 2:550583/1‑139 (MQ=255)
aTGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGtt < 8:36857/140‑1 (MQ=255)
gtgggtggtGTGGTAACGATGGTGGGGTAAATTCGCTTATTTATTCGCTTAAATCAGCGTCGGGTTTTTCTATTTTGCAGAGGTGCTACCTGAAATATGTTGATGTACTCGCACTTTTCCCAATAACTGCGCGCTGTTcc < 8:191556/137‑1 (MQ=255)
ggtggtggtCTGGTACCGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATAGTTTTGAGATGTGCCGACAGCAATATGTTGCTGTTCTAGCACATATGACACTAAACGCGCCCTGttaa > 5:314685/1‑138 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAAAGGTGCGTCCAGAAATATGTTGCAGTACTCGCACTTTTACCACTAACTGCCCCCAGTTACAg > 2:255745/1‑140 (MQ=255)
gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGCGGTGCGACCAGCAATATGTTGCAGTACTCGCCCTTTTACCACGAACTGCGCGCTGTTCCAGGt > 8:758775/1‑140 (MQ=255)
gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGAGGTGCGGCCAGCAATAAGTTGGAGTACTCGCCCTTTTCCCCCGAACTGCGCGCTGTTGCAggg > 7:161978/1‑139 (MQ=255)
gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGGCGTACTCGCACGGATCCCACTAACTTCGCGCTGTTACAggg > 2:82609/1‑139 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGttt < 3:96987/140‑1 (MQ=255)
gtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTGTTTCTCTTTTGCAGAGGTTCGACCAGCAATATGTTGGAGTTCTCGCACTTTTCCCACGTACTGCTCGAGGTTCCAGGtttt > 4:179555/1‑140 (MQ=255)
gtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCATAGGTTCGACCAGCAATATTTTGCAGTACTCGCACTTTTGCCACTTACTGCGCGCTGTTGCAGGtttt > 7:424541/1‑140 (MQ=255)
gtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTGCAGAGGTGCGACCAGCAATATTTTGCAGTAATCGCACTTTTACCACAAAATGCGCGCTGTGACAGGtttt > 1:230401/1‑140 (MQ=255)
tCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAGTCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTGTTg < 8:392673/140‑1 (MQ=255)
tCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTg < 8:81918/140‑1 (MQ=255)
cGATCGTGCGGTAACTTCGCTGATTTAATCTCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGGACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 5:62146/140‑1 (MQ=255)
cGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 6:509571/140‑1 (MQ=255)
cGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 7:422191/140‑1 (MQ=255)
aTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTGTTTTGCATATGTGCGACCAGCAATATGTTGCAGTACACGCACATTTACCACTAACTGCGCGCGGTTCCCGGTTTTGTAGCTAAAca > 5:456127/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTCAGAGGTTCGACCAGCAATATTTTGCATGACTCGCACTTTTCCCCCTAACTTCGCGCTGTTCCAGGTTTTGTTGCTAAACTGATc > 4:603064/1‑140 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTCAGAGGTGCGCCCCGCAATATTTTGGAGTTATAGCCCTTTTACACCTAACTGAGCGCTGTTTCAGGTTTTGTAGCTAAAATGATc > 8:470826/1‑140 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTCAGAGGTGCGCCCCCCAATATGTTGCCGTACAGGCGCTTTTCCCACAAAATGGCCGCGGTTACAGGTTTTGTAGCTAAACTGAtg > 8:465368/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATc > 8:287877/1‑140 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTATTTCAGAGGTGCGCCCAGCAATATGTTTCAGTTCTAGCACATTTCCCAAGAAAAGCGCGCGGTTGAAGGTTTTTTAGCTAAAATGAta > 4:952247/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGAGGTGCGACCAGCAATATGTTTCAGTAATCGCCCTTTTACCACTAACAGCGCGCTGTTACAGGTTTTGTTTCTAAAATGAta > 4:141538/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATTTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCGGTTCCAGGTTTTGTTGGTAAACTGAta > 6:501541/1‑139 (MQ=255)
aaCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATc < 1:930645/140‑1 (MQ=255)
aaCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATc < 7:565270/140‑1 (MQ=255)
aCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATTTTGCTGTTCTAGCACTTTTACCACTAACTGCGCGCTGGTGCAGGTTTTGTTGCTAAACAGATAtttttaa > 3:855708/1‑136 (MQ=255)
aCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCGGTGTTGCAGAGGTGCGGCCAGCAATTTGTTGGAGTACTCGGACGTTTCCCACTTACTGCGCGCTGTTCCAGGGTTTGTAGCTAAACGGATCgttgtga > 4:369774/1‑136 (MQ=255)
ttCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAg < 1:589468/140‑1 (MQ=255)
cGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTTCAGAGGTGGGACCAGCCATATGTTGCAGTACTCGCAATTTTGCCACTAACTGCGCGCGGTTCCAGGTTTTGTAGCTTAACTGATCTTTATCATGcc > 7:141273/1‑139 (MQ=255)
tAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCg < 6:309105/140‑1 (MQ=255)
gcatCAATCAGCGTCGCGTTTTTCTCTTTTTCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACg < 4:47062/137‑1 (MQ=255)
gCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACg < 5:194628/140‑1 (MQ=255)
ttCAATCAGCGTCGCGTTTTTAGCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGGTTTGTTGCGAAACGGATATTTATCAAGCACCACATCGCCCCgct > 8:716478/1‑138 (MQ=255)
ttCAATCAGCGTCGCGGTTTTATCTTTTTCAGAGGTGGGGCCAGCAATATGTTGCAGTACGCGCACTTTTGCCACGAACTGCGCGCTGGTCCAGGGTTTGTAGCTAAACTGATCGTTTTGAAGCACCAACTAGCCAccag > 6:28950/1‑137 (MQ=255)
tctcTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAATCggcggc < 2:664416/140‑1 (MQ=255)
ctctTTTGCAGAGGTGCGACCAGCAATCTGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAATCGGCGGCa < 6:46359/140‑1 (MQ=255)
ctctTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGGTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAATCGGCGGCa < 3:876274/140‑1 (MQ=255)
tGCAGAGGTGCGACCAGCATTATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCGAGGTTGTGTGGCTAAACTGCTCGTTATCACGCACCAACTCGCCACGATCGGAGATGCCAATCGGCGGCCCTCGcg > 5:864778/1‑139 (MQ=255)
tGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCt < 7:533073/88‑1 (MQ=255)
tGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCt > 8:533073/1‑88 (MQ=255)
tGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCCGTTCCAGGTTGTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAATCGGCGGCACTCGCt < 8:736542/140‑1 (MQ=255)
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ACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCCAATCGGCGGCACTCGCT > NZ_CP022686/3264957‑3265234
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
