Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,265,096 |
G→T |
17.1% |
A73E (GCA→GAA) |
ytfJ ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,265,096 | 0 | G | T | 17.1%
| 560.2
/ 30.8
| 266 | A73E (GCA→GAA) | ytfJ | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base G (84/129); new base T (50/3); total (134/132) |
| Fisher's exact test for biased strand distribution p-value = 3.65e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 270 total aligned reads displayed.
ACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCC > NZ_CP022686/3264957‑3265217
|
aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg < 2:663152/140‑1 (MQ=255)
tctcCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCa < 6:791696/140‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 6:819974/140‑1 (MQ=255)
ctgctgCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg < 6:452588/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 1:995430/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc < 5:1221581/140‑1 (MQ=255)
gctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTATTTTGGATAGGTGAGAc > 2:102377/1‑140 (MQ=255)
gctgcGCACAAACATCCCAGAACCCGGCATCGCGTAGTCGTTGTTAACAATTGTGGTGGTCTGGTAACGATCGTGCGTGAACTTCGCTGATTTAATCGCTTCTATCATCGTCGCGTTTTTGTCTTTTGCAGAGGTGCGAc < 5:410218/140‑1 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGTGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGAGGTTTTATCATTTGTAGAgggtccg > 3:1059942/1‑133 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTGTTTCTATTTTTCAGAGGTGCgg > 4:793831/1‑137 (MQ=255)
ctgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTTCAGAGGTGGGAcc > 2:223127/1‑140 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGACCa > 2:379009/1‑140 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTGTTTCAGAGGTgaggaca > 1:568685/1‑134 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGAccc > 8:643608/1‑139 (MQ=255)
tgcGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTCGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGc < 3:301658/135‑1 (MQ=255)
tgcGCACAAACAACCCTGAACCCGTAATAGATTCGTCGGTGTTAACAATGTTGGTGGTCTGGTAACGATCGTGAGGTAACTTCTCTGATTTAAGCGCTTCAATCAGACTAGCGTTTTTATGTTTTGGACAAGTGAGAccc > 2:924441/1‑139 (MQ=255)
gcgcACAAACATCCCTGAACCCGGAATCGCGTCGGCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg < 5:663347/140‑1 (MQ=255)
cgcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTCGGTTTTGGAGAGGTGCGGCCa > 3:1315804/1‑138 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 1:472140/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 7:546103/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 8:1012019/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 2:500895/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 6:525124/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 2:111401/140‑1 (MQ=255)
gcACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 5:223996/140‑1 (MQ=255)
ccaaaaaCCTCCCTGAACCCGGAATCCCGTCGTCGGTGTTAACACTGGGGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa < 8:774993/136‑1 (MQ=255)
acaAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAat < 8:31117/140‑1 (MQ=255)
caAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAata < 5:829202/140‑1 (MQ=255)
aCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTGTTTCTATTTTTCATCGGTGAGTCCCGCAATATGt > 2:855401/1‑140 (MQ=255)
tCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGc < 6:896278/140‑1 (MQ=255)
ccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTGCAGAGGTGCGGCCAGCAATTTggttg > 4:662092/1‑134 (MQ=255)
gAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCATTTGCAGAGGTGCGACCCGCAATTTGTTGAAGTAc > 1:1013896/1‑140 (MQ=255)
aaCCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCTATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACt < 5:522909/140‑1 (MQ=255)
aaCCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGGGCGGTAACTTCGCTGATTTAATCGCTTCACTCAGCGTCGCGTTTTTGTCTTTTGAAGCGGTGCGACAAGCAATAAGTTGCAGTaag > 7:414425/1‑138 (MQ=255)
aCCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGGTTTCTCTTTTGCAGACGTGCGAACCGCAATATGTTGCAgatc > 4:583200/1‑135 (MQ=255)
cgcGGAATCGCGTCGTCGGTGTTAATAATGGTGGTGGTCTGGTATCCATCTTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTATTTTGCAGAGGTGAGACTAGCAATATGTTGCAGTACt < 3:415750/136‑1 (MQ=255)
ccGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGc < 8:538908/140‑1 (MQ=255)
ccGGAAGCGCGTCGTCGGTGTTACCAATGGTGGGGGTCTGGTAACGATCGTTCGGGAACTTCGCTGATTTAATCGCTGCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGc < 8:1189264/140‑1 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTATTTTTCAGAGGTGAGACCAGCAATATTTTGCAGGAATAGCAc > 8:179967/1‑140 (MQ=255)
ggAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTCTTTTTCAGAGGTGCGCCCCGCCATATTTTGCAGTACTCGCAc > 1:80708/1‑140 (MQ=255)
aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGACCCGCAATATGTTGCAGTACTAGCAc > 4:109594/1‑138 (MQ=255)
tCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt < 2:1168626/140‑1 (MQ=255)
tCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt < 6:470512/140‑1 (MQ=255)
tcgtcgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTCAGATGTGCGACCAGCAATATGTTGGCGTACTCGCACTTTTccc > 4:171063/1‑138 (MQ=255)
gtTATCAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTGCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 7:6196/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTTACGAGCGTGCGGTAACTTCGATGTTTTAATCGCTTCTATCAGAGTCGAGTTTTTCTCTTTTTCATATGTTCGAACAGCAATATGTTGCATTACTCTCATTTTTCTCAGTTACTgcg < 4:233132/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 1:204045/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 7:1071291/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 1:916875/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 1:716205/140‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 3:837606/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 3:27945/138‑1 (MQ=255)
tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTATCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 1:363615/140‑1 (MQ=255)
tAACAATGGTGGTGGGCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcg < 2:1284503/140‑1 (MQ=255)
tAACAATGGGGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcg < 3:1262295/138‑1 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTTCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACGTTTACCACTAACTTCGCGCGGTTcc > 6:139247/1‑140 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGCCCCCGAATATGTTTCAGTACGCGCGCTTTTCCCACTAACTGCGCGCTgggcg > 8:378056/1‑136 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt < 2:1134693/116‑1 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtt > 1:1134693/1‑116 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGtt < 4:49231/138‑1 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGACCCGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTcc > 6:1017373/1‑140 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTGATTTGCATAGGGTCGCCCCGCAAAATGTTGCCGTACACGCTCTGTTCCCACTCGCTGCGGGCTGGTcg > 8:840155/1‑139 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTTGACAGGTGCGACCCCCAAAATGTTTCAGTACAAGCACTTTTACCACAAAAAGCGCGCTggtgc > 5:703655/1‑136 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCTTTTTCAGAGGTGCGCCCAGCAATATGTTGCAGTACTAGCACGTTTACCACTAACTGCGCGCTGttaa > 1:1185216/1‑138 (MQ=255)
ggtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTCATTTAATCGCTTCAATCAGCGTAGCGGTTTTATAATTTGAACAGGTTCGACCATCAAAATTTTTCAGTATGAGCACATTTACCACAAACTTCGCGCGGttgc > 7:43708/1‑138 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCTTCGCGTTTTTGTCTTTTGCATACGTGCGACCAGCAATATTTTGGAGTACTAGCACTTTTCCCACTAAATGCGCGCGGTTGCAg > 5:1089823/1‑140 (MQ=255)
tggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTATCATTTTAAGAAGTGCGACCAGCAAAATGTTGAAGTACTAGCCATTTTACCAATAACTTCGCGCTGttac > 3:550045/1‑136 (MQ=255)
gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCGTTTGCAGAGGTGCCACCAGCAATATGTTTCAGTAATCGCAAGTTTCCCACTAACTGCGCGCTGtagaaggg > 8:725504/1‑133 (MQ=255)
gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTTTCTTTTGCCGAGGGGCGCCCCGCAAAATGTTGCGGTAATAGCACATTTCCCACTAAAAGCGCGCTGTTCCAGGt > 7:1167677/1‑140 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGttt < 1:253634/140‑1 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGt < 4:1230847/138‑1 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATGTTTTTCAGAGGTGCGAGCAGCAATATTTTTCAGTACTAGCACTTTTCCCCCAAACTGCGCGCTGTTGCAggg > 3:872895/1‑137 (MQ=255)
ggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATATTTTTCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCCATTTTCCCACTAACTGCGCGCTGTTCCAggg > 4:1149217/1‑137 (MQ=255)
gtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTATTTTTAAGATGTGCCACCAGCAAAATTTTGCAGTTCTCCCACTTTTACCACAAAATGCGCGCGCTTACATGtttt > 5:759817/1‑140 (MQ=255)
tGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTTCAGAGGTGCGCCCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTa > 2:372910/1‑140 (MQ=255)
aaCGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTa < 6:316986/140‑1 (MQ=255)
cGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 7:845947/140‑1 (MQ=255)
cGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTATCTTTTGCAGAGGTGCGAACAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 7:917355/140‑1 (MQ=255)
cGATCGTGCGGGAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaaa < 5:950578/140‑1 (MQ=255)
gATCGTGCTGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTaa < 4:718839/138‑1 (MQ=255)
aTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTCTTTTGCAGAGGTGGGCCCAGCAATATGTTGGAGTTCTCGCACTTTTCCCCCTAACTGGGCGGTGTTCCAGGTTTTGTAGCTAAACt > 7:310555/1‑140 (MQ=255)
aTCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTATTTTGCAGAGGTGCGACCAGCAATAAGTTGCAGTACTCGCACTTTTACCACTAACTGCGCGCTGTTCCAGGTTTTTTAGCTaaaaa > 2:971680/1‑138 (MQ=255)
tCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACATTTACCACAAACAGCGCGCTGTTCCAGGTGTTTTAGCTAAAc > 4:546144/1‑138 (MQ=255)
cGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTATTGCAAAAGTGAGCACAGCAATATTTTGCAGTACACGCACTTTTAAAACAAACTGCCCGCTGTTCCAGGTTTTTTATCTAAACAGa > 6:1106993/1‑140 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGTATTTTGAAGAGGTGCGTCCAGCAATATGTTTCAGTAATCGCACTTTTACACATAACTGCGCGCGGTTCCAGGTTTTTGAGCTTAACTGAta > 6:183361/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTGGCTTTTTGAGAGGTGCGCCCAGCAAAATGTTGCAGTACTCGCGCGTTTCCCACTAACTGCGCGCGGGTCCAAGTTTTGGCGCTAAAATGAtg > 2:1360618/1‑139 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTTCAGCGGGGCGGCCCGCCAAATGTTGGAGTCCGCGCGCAGTTCCCCCCAACGGCGCGGTGGTGCAGGTGGTGGTGCTAAACGGagg > 6:127539/1‑138 (MQ=255)
tGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTAACTTTTTCAGAGGTGCGCCCCGCAATATTTTGCAGTAGACGCCCATTTGACACACACAGCGCGCGGTTACAGGTGTTGTATCTAAACTGAta > 1:1261211/1‑139 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTGTTTTTCAGAGGTGCGCCCAACAATATTTTGCAGTACTCGCACTTTTACCACTAAATGCGCGCTGTTCCAGGTTTTGTTGCTAAACTGATc > 3:1178058/1‑138 (MQ=255)
cGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCCCTTTTCCCACTAACTGGGCGCGGGTCCAGGTTTTGTAGGTAAACTGAtg > 4:571899/1‑137 (MQ=255)
tAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTCACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTAt < 1:115993/140‑1 (MQ=255)
aCTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTGTGTTTTGCAGAGGTGCGCCCCCCAATATGTTGCAGTACTCGCCCTTTTGCCACTAACTGCGCGCGGTTCCAGGTTTTGTAGCTAAACATATCGTTATCa > 7:110770/1‑140 (MQ=255)
ttCGCTGATTTAATCGCTTCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGACCACCAATATGTTGCAGTACTCGCACTGATCCCCCGAACTGCGCGCAGGTCCAGGGTTTGTAGCTAAACTGATCTTTAtaa > 4:977104/1‑136 (MQ=255)
cTGATTTAATAGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGATGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCAcc < 1:331371/140‑1 (MQ=255)
gATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCaa < 7:752784/140‑1 (MQ=255)
cTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGa < 5:15249/140‑1 (MQ=255)
ttCAATCAGCGTCGCGTTTTTATCTTTTGCAGCGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATATTTATCAAGCACCAACTCGCCACGAt > 2:733935/1‑140 (MQ=255)
ttCAATCAGCGTCGCGGTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACGAACTGCGCGCTGTTCCAGGTTTTGTTGCTAAACTGATCTTTATCAAGCACCAACTCGCCCCgca > 2:906763/1‑138 (MQ=255)
cGTCGCGGTTTTATCTTTTGCAGAGGTGCGACCAGCAATATTTTTGAGTACTCGCACGTTTCCCACTAACTGCGCGCTGTTCCAGGGTTTGTAGCTAAACTGATCTTTATAAAGCACCAACTCGCCACGATCGGTGAttc > 2:558708/1‑138 (MQ=255)
tCGCGTTTTTAGCTTTTTCAGAGGTGCGGCCCGCAATATGTTGCAGTACTCGCACTTTTACCACAAACAGCGCGCGGGTACAGGTTTTGTAGCTAAACATATCTTTATCAAGCACCAACACGCCCCGAACGGTGATGc > 4:1014679/1‑138 (MQ=255)
|
ACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTCCAGGTTTTGTAGCTAAACTGATCTTTATCAAGCACCAACTCGCCACGATCGGTGATGCC > NZ_CP022686/3264957‑3265217
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
