Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,370,556 |
T→G |
16.6% |
P99P (CCA→CCC) |
rluD ← |
23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,370,556 | 0 | T | G | 16.6%
| 314.6
/ 19.8
| 209 | P99P (CCA→CCC) | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| Reads supporting (aligned to +/- strand): ref base T (79/90); new base G (38/2); total (117/92) |
| Fisher's exact test for biased strand distribution p-value = 2.94e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 210 total aligned reads displayed.
AGGCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGCTTAT > NZ_CP022686/1370419‑1370695
|
aGGCCGGTGGTGTTTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTgg < 2:244212/140‑1 (MQ=255)
ggCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGt < 1:495478/140‑1 (MQ=255)
ggCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGt < 1:788979/140‑1 (MQ=255)
gtggtgTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTAACACCAGGGAGCGTGGGttatt > 4:798586/1‑140 (MQ=255)
ggtgTCATTATCCAGACGATGGACGATGCCCGCACGCGGGACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCCCCAGGTCGCGGGGTttatt > 6:421798/1‑138 (MQ=255)
gtCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGa < 2:66034/140‑1 (MQ=255)
gtCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGa < 4:918540/140‑1 (MQ=255)
tCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGAc > 8:360724/1‑140 (MQ=255)
tATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACgatg < 3:1072195/140‑1 (MQ=255)
ccAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTTTTAAAGACgatga > 6:213179/1‑138 (MQ=255)
aGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGata < 5:149703/138‑1 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTttatt > 2:403921/1‑124 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATTACGATGATatct > 8:628526/1‑140 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTAAAGAAGATGatatgt > 2:156631/1‑138 (MQ=255)
cgatggacgatgCCCGCACGCGGTACATCGGCAATTGGCGTATAGTAAAGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttc < 4:988814/140‑1 (MQ=255)
cgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttc < 2:959551/140‑1 (MQ=255)
atggacgatgCCCGCATGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttcat < 1:1046893/140‑1 (MQ=255)
atggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttcat < 4:64232/140‑1 (MQ=255)
atggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttcat < 7:569250/140‑1 (MQ=255)
tggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATGACGATGATatcttcata > 4:174250/1‑139 (MQ=255)
tggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCACGTGGTTTATTAATGACGATGATatcttcatc > 4:511368/1‑140 (MQ=255)
tatgCCAGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCATGTCGCGTGGTTTATTAATGACGATGATatcttcatcttc < 6:603299/137‑1 (MQ=255)
gttgCCCGCACGCTGTACATCGGCAATGGGCGGATAGTAATGACGCAACGCCTTCAGTACCGTACCATCCGGGTTACCCGCGCCAGTATGTACGACCAGGTCGCGTGGTTTATTAATGACGATGATATcttcatcttcat < 2:693986/138‑1 (MQ=255)
gatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttcatcttc < 5:858922/138‑1 (MQ=255)
atgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATGACGATGATATCTTCATCTTGATa > 7:234975/1‑140 (MQ=255)
atgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGTTATCTTGATCTTCATa > 3:894543/1‑140 (MQ=255)
atgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTTTTAAATAACAAGATatcttcataatcaaa > 4:672070/1‑133 (MQ=255)
gCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATa < 5:788921/138‑1 (MQ=255)
cccGCACGCGGGACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGAGGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGAc < 8:871486/140‑1 (MQ=255)
ccGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGa < 5:213179/138‑1 (MQ=255)
cgcgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATc < 7:874130/140‑1 (MQ=255)
cgGTACATCGTCAATGGTCGGATAGTAATGAAGCAACTCATTCAGTACCGTACCATCCGGGTTACCCGCGCCATGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 8:760619/140‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATATTCATATTCATAGACGCTATCCa > 7:7326/1‑140 (MQ=255)
gTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTAATGACGATGATATCTTCATCTTCATAGACCATATCCa > 6:171363/1‑138 (MQ=255)
tCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGAACCACCAGGTCGCGGGGTTTATTAATTACGATGATATATTAAAATTCAAAGACGATATACAGCGGGat > 2:86165/1‑140 (MQ=255)
cGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGata < 7:123415/140‑1 (MQ=255)
ggCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTTATGACGATGATTTCTTGATCATCATAGACGATATACAGCGGGatat > 3:135730/1‑140 (MQ=255)
ggCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATTACGATTATATATTACTCTTCATAGACGAAATACACCCGGat > 6:288644/1‑138 (MQ=255)
cAATGGGCGGATAGTAATGCAGCAACGCATTCAGTACCGTACCATCCGCGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTGATTAATGTGGATGATATGTTCCTCGTAATAGAAGAGCTCCAGCGGGattt > 5:1009220/1‑136 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATTACGATGTTATCTTGATCTTCATAGACGATATACAGCGGGATATCCtt > 8:105964/1‑139 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTg < 1:1072419/140‑1 (MQ=255)
gggCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTg > 6:886203/1‑138 (MQ=255)
cGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCgg > 6:843643/1‑138 (MQ=255)
gATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTTTTAATGACGATGAAAACTTCATATACATAGACGATATACCGCGGGGTATCCTGCGGttaa > 7:432638/1‑138 (MQ=255)
aTAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATGAACATGAATTATTCAACTTCATATACGCAATCAAGCGGGCTATCCTGCGGTTGaa > 7:286938/1‑140 (MQ=255)
aTAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGata > 4:346829/1‑115 (MQ=255)
aTAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGata < 3:346829/115‑1 (MQ=255)
aTAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCCGCGCGATATCCTTCGGTTCaa > 2:22692/1‑140 (MQ=255)
tAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACACGCGCCACGATGTACCACCAGGTAGCCTTGTTTATTAATGACGATGATATCTTCATCATAATAGAAGATTTCCAGCGGGATATACTGCGGTTCa > 6:434371/1‑138 (MQ=255)
aaGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGctt < 2:757331/140‑1 (MQ=255)
aaGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGctt < 3:672070/140‑1 (MQ=255)
aaGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTAATTACGATGATATGTTAATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGctt > 3:756187/1‑140 (MQ=255)
aGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTAATGACGAAGATATCTTCATCTTCATATACGATATCCCGCGGGATATCCTGCGGTTCAAAACGCGcttg > 3:812236/1‑139 (MQ=255)
cAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTAATGACGAAGATATATTCATATTCAAATACGAAATAAAAAGGGATATCATGCCGTTCAAAACGCGcttc > 6:927690/1‑138 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATACAGCGGGTTATCAAGCGGTTCAAAACGCGcttattct > 4:389295/1‑140 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTAATGCAGATGATATGTTCATCGTGATAGACGATATCCCGCGGGATATCCTGCGCTTCAAAACGCGcttcttcg > 7:404509/1‑139 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTTTTTATGAACATGATATATTCATATTCATAGACGATATACAGCGGGGTATACTGCGGTTCAAAACgcgcgtgttgt > 7:199828/1‑133 (MQ=255)
cGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATACTGCGGTTCAAAACGCGcttcttctt > 4:949490/1‑140 (MQ=255)
gCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGAAGATATATTAAAGTTCATAGACGATATCCAGCAGGATATACTGCGGTTAAAAACGCGcttcttct > 5:843919/1‑138 (MQ=255)
taccgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAg < 8:352534/140‑1 (MQ=255)
cgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGt < 2:61386/140‑1 (MQ=255)
cgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTTTTTATTAAGATGATATATTAATATTAATATACGATATAAAGCGGGATATACTGAGGTTCAAAACGCGCTTATAATTCAATATCAGCGt > 3:70704/1‑140 (MQ=255)
gtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTAATGACGATGATATATTAATATTCATATACGATATACATCGGGATATCCTGCGGTTAAAAAAGCGCGTGTTATTCAATATCAGCGtt > 3:184605/1‑140 (MQ=255)
gtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGGCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACTATATCCAGCGGGATATCCTGCTGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGtt < 7:333676/140‑1 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATTACGATGATATATTCATATTCATAGACCATATACAGCGGGATATACTTAGGTTCAAAACGCGCGTCATAATCAATATCAGCGTTg > 4:482497/1‑140 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATGACGATGATATCTTCATCTTCATAGACGAAATCCAGCGGGATATCCTGCGGTTAAAAACGCGCTTCTTCTTCAATCTCAGCGTTg > 1:877455/1‑140 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGCTATCCAGCGGGATATCCTTCGGGTCAAAACGCCCATCTTCTTCAAACAAAGCGttt > 1:597385/1‑139 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTg > 2:1016197/1‑140 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCGTAAAAGACGATATCCAGCGGGATATCCTGCGGTTCAAAAAGCGCTTCTTCTTCAATATCATCGttt > 4:610098/1‑139 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTTATGACGATTATATCTTCATGATAATAGACCATATACAGCCGGATATACTGCGGTTCAAAAAGCGCGTCTTCTTGAATCTCAGCGtgg > 4:1055322/1‑138 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATGACGATGATATCTTCATCTTCATAGACGATATACAGCGGGATATCCTGCGGTTAAAAACGCGCTGGTTCTTGAATATAAGCGTTGATggg > 3:85297/1‑139 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTAATCTTCATAGACGATATCCAGCGGGATATCCAGCGGTGAAAAACGCGCGTCGTATTCAATAGAAGCGTTTATTGc > 4:914776/1‑140 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATAGCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATg < 5:972450/138‑1 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTTTTTATTACGATGTTATGTTCATATTACTAGACCCTATCCAGCGGGATATACTGCGGTTCAAACCGCGCGTCTTCGTCAATATCAGCGGTGATgtc > 3:58995/1‑138 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTTAAGACGATGATATAATAAACTTCATAGACGAAATCCAGCGGGATATCCATCGGGTCAAAAAGCGCGTCTTATTCAATATAAGCGTTTAttgg > 1:403357/1‑137 (MQ=255)
tCCGGGTTACCCGCGACAGGATGTACCACCAGGTCGCGTGGTTTATTTATGAAGTTGATATATTCATCTTAATAGACGATATACAGCGGGATATACTGCGGTTGAAAACGCGCTTCTTAGTCAAACTCAGCGTTGATggg > 4:293029/1‑139 (MQ=255)
cGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATACAGCGGGATATCCTGCGGGTCAAAACGCGCTTCTTCTTAAAACTAAGCGTTGATggg > 5:461898/1‑137 (MQ=255)
gTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATTACGATGATATCTTGATATTAATAGACGATATCCACCCGGGTATCCTGCGGTTTAAAAAGAGCTTCTTATTCAATCTAAGAGTTGATTGCCACCt > 8:555989/1‑140 (MQ=255)
gTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCGTCTTGTTCAATCTCAGCGTTGATGGCCAccg > 2:889448/1‑139 (MQ=255)
tACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCAGCGGTTCAAAACGCCCTTCTTCTTCAATCTCAGCGGTGATGGCCAccc > 6:787158/1‑137 (MQ=255)
ccGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCg < 2:562998/140‑1 (MQ=255)
ccGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCg < 7:50112/140‑1 (MQ=255)
cgcgCCAGTATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGTATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGc < 7:840955/140‑1 (MQ=255)
gcgcCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGcc < 7:697467/140‑1 (MQ=255)
tACCACCAGGTCGCGTGGTTTATTAATGACGCTGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACtt < 8:957482/140‑1 (MQ=255)
accaccAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCAGGATATCCTGCGGTTCAAAACGCGCTTCTTATTCAATCTCAGCGTTGATGGCCACCTGCTCGCCCCCCAATACttt > 4:884911/1‑140 (MQ=255)
accaccAGGTCGCGTGGGTTATTAATGACGATGATATCTTAAACTTCATAGACGATATACAGCGGGATATCCTGCGGTTCAAAACGCGCGTCTTATTCAAACTCAGCGGTGATTGCCCCCAGCTCGCCACCCCATACatt > 2:83957/1‑140 (MQ=255)
tggTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGAGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTtttct < 5:201325/137‑1 (MQ=255)
ggTCGCGTGGGTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATACTGCGGTTAAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTtttattta > 4:1002446/1‑139 (MQ=255)
tCGCGTGGTTTATTAATTACGATGATATCTTAATCTTCATAGACGATATCCAGCGGGATATACTGCGGTTCAAAACGCGCTTCTTGTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCCATACTTtttgttta > 6:930513/1‑137 (MQ=255)
tCGCGGGGTTTATTAATGACGATGATATCTTCATCTTAATAGACGCTATCCAGCGGGCTATACTGCGGGTGAAAACGCGCGTCTTATTCAATATCAGCGTTGATGGCCCCCGTCGCGCCCCCCAATACTTTTTATTTAgg > 7:597705/1‑140 (MQ=255)
cgctTGGTTTATTAATTACGATGATAGCTTCATATTGATAGACGATATCCAGCGGTATATCCTGCGGTGCATAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 4:244213/140‑1 (MQ=255)
cgcgTGGTTTATTAATGTCGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 4:257671/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATTGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGTCCACCTTCTCGCCACCCAATACTTTTTCTTTCGGc < 2:941045/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCg < 6:820100/138‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 8:481051/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 8:722882/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 2:803443/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 1:548232/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 1:420146/140‑1 (MQ=255)
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AGGCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGCTTAT > NZ_CP022686/1370419‑1370695
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
