Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,370,556 |
T→G |
16.0% |
P99P (CCA→CCC) |
rluD ← |
23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,370,556 | 0 | T | G | 16.0%
| 359.9
/ 29.4
| 237 | P99P (CCA→CCC) | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| Reads supporting (aligned to +/- strand): ref base T (98/95); new base G (40/3); total (139/98) |
| Fisher's exact test for biased strand distribution p-value = 8.48e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 237 total aligned reads displayed.
GGCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGCTT > NZ_CP022686/1370420‑1370693
|
ggtggtGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTttat > 8:107396/1‑140 (MQ=255)
gtggtgTCTATATCCAGACTATTGACGATGCCCTCACGCTGTACATCGGCAATGGGCGGTTAGTAATGAAGCAACGCATTCAGTACCGTCCTATGCGGGTTAGCCGCGCCAGGATGTACAACCAGGTCGCGTGGTtta < 2:670638/138‑1 (MQ=255)
tggtgTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCCCCAGGTCGCGGGGGttattt > 5:194887/1‑139 (MQ=255)
ggtgTCTTTATCCAGACGATGAACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTttatt > 2:634202/1‑138 (MQ=255)
gtgtCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGttttttt > 1:348913/1‑137 (MQ=255)
gtCTTTATCCAGCCGCTGGACGATGCCCGCACGCGTTACATCGGCAATGGGCGGATAGTAATGAATCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAAt < 1:87511/138‑1 (MQ=255)
gtCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAAt < 1:580061/138‑1 (MQ=255)
gtCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGa < 4:1108518/140‑1 (MQ=255)
cTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACg < 7:701818/140‑1 (MQ=255)
tATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACga < 1:204873/138‑1 (MQ=255)
aTCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTTATTACgatga > 5:939253/1‑140 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCCTCCGTGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACgattagatat > 8:504190/1‑133 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAAt > 3:826710/1‑127 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAAt < 4:826710/127‑1 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATTACGATGatataa > 3:907600/1‑138 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatct > 6:723013/1‑140 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGataaca > 6:1138456/1‑137 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACAGCGGCAATGGGCGGATAGTAATGAGGCAACGCATTCAGTACCGTCCCATCCGGGTTACCCGCGCCAGGATGTACCACCCGGTCGCGGGGGTTTTTAATTCAGATGatatat > 7:530810/1‑138 (MQ=255)
cgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttc < 6:768523/140‑1 (MQ=255)
cgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatct > 1:226896/1‑138 (MQ=255)
gatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatctt < 1:883419/138‑1 (MQ=255)
atggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttcat < 5:723013/140‑1 (MQ=255)
ggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCGGGATGTAACCACAGGTAGCGGGGTTTATTATTGCGGATGATatcttctgct > 7:278328/1‑136 (MQ=255)
ggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGAGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAAAGACGATGATttcttaatat > 8:516054/1‑138 (MQ=255)
acgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTAATGACGATGATatagtcatct > 1:42240/1‑138 (MQ=255)
gatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATcttcatcttcat < 5:1137345/140‑1 (MQ=255)
ccGCACGCGGTACATCTGCAATGGGCGGATAGTCATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACg < 8:1133358/140‑1 (MQ=255)
cgcgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATc < 4:1029051/140‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCAGGGTTAACCGCGCCAGGATGTACCACCAGGTCGCGTGGGGTATTAATTTAGAGGATATATTCATGATAATAGACGATATACa > 7:1105261/1‑140 (MQ=255)
cATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCggg < 8:683456/140‑1 (MQ=255)
cATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCggg < 8:459191/140‑1 (MQ=255)
aTCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCgggg > 4:1180494/1‑139 (MQ=255)
cGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGa < 1:60775/138‑1 (MQ=255)
cAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTGTAATGACGATGATATATTCATCTTCATAGACGCTATACAGCGGGGAATcc > 6:526482/1‑140 (MQ=255)
aaTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGAAGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCt < 4:349467/140‑1 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATcc < 1:810169/138‑1 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTg > 7:49248/1‑140 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAAAGACGATGATATCTTCATCTTCATAGACGATATCCCTCGGGaattactg > 3:290489/1‑133 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCAGGGTTACACGCGCCAGGATGTACCACAAGGTAGCGTGGTTTATTTATGACGATTATATCTTAAACTTCAGATAAGATCTACAGCGGGATATCCtt > 5:826226/1‑139 (MQ=255)
gggCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATTACGATGATATCTTAATATTGATATACGAAATACAGCGGGATATCCTg > 1:1187781/1‑138 (MQ=255)
cGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGGTATTTATGGCGATGATATATTCAGCTTCATAGACGATATCCAGCGGGATTTGCTGCGGtt > 6:97923/1‑140 (MQ=255)
aGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCAAAGACGATATCCAGCGGGATATCCTGCGGATCaaaa < 3:470892/140‑1 (MQ=255)
aTGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTGTTTTTATTACGCTGTTATGGTTATCGTGATAGACGATATCCAGCGGGCTATGCTGCGGGTGACAAcgcg > 5:437771/1‑140 (MQ=255)
aaGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGctt < 8:591001/140‑1 (MQ=255)
aaGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTTTTTATGAAGATGTTATCTTCATCTTAATAGCCGATATCCCGCGGGATATCCTGCGGTTCTAAACGCGctg > 5:1026626/1‑139 (MQ=255)
aaGCAACGCAATCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACgcgc < 2:1249535/138‑1 (MQ=255)
cAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGAGGTTTTATAATGACAATGATATATTAATCTTCAAAGACCCAATCCCGCGGGATATACAGCGGGTAAAAAcgcggtaagt > 8:2737/1‑134 (MQ=255)
aaCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTTATTACGATGATATATTAATATTAATAGACGATATACAGCGGGATATACAGCGGGTCAAAACGCGcttct > 1:1077604/1‑138 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTAATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGcttattct > 6:855362/1‑140 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCGTAATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGcttcttct > 4:1152386/1‑140 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATATTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGcgtcttct > 6:1060604/1‑140 (MQ=255)
cGCATTCAGTACCGTACCATCCGGGTTACCCGAGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATTACGATGATATCTTCATGTTAATAGACGATATAAAGCGGGATATCCTGCGGTTCAAAACGCGattcgtctt > 4:1206447/1‑140 (MQ=255)
gCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACCATATACAGCGGGATATCCTGCGGTTCAAAACGCGcttcttat > 2:758973/1‑136 (MQ=255)
gCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATACAGCGGGATATCCTGCGGTTCAAAACGCGcgtcttct > 2:867930/1‑138 (MQ=255)
tCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTTTTAATGACGATGATATCTTAATCTTGATATACGATATACAGCGGGATATACAGCGGGTCCAAACGCGCTTCTTATTGAAta > 3:383087/1‑139 (MQ=255)
aGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATATTCATATTCATAGACGATATACAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTGTTAAAtcta > 3:1196900/1‑139 (MQ=255)
taccgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTAATAATGACGATGATATCTTCCTCTACAAATACCAAATACATCGGGCAAACCAGCGGCTCAAAACGCCCTTAATCATCAAtatg > 2:809869/1‑135 (MQ=255)
cgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATTACGATGATATCTTAATCTTAATAGACCATATACAGCGGGATATCCTGAGGGTAAAAACGCGCTTATTATTCAATATAAGCGt > 5:1092159/1‑140 (MQ=255)
cgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGt < 4:914432/140‑1 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCCCCAGGTCGCGTGGTTTATTAATGACGATGATATATTCATCTTCATAGACGATATACCGCGGGATATACTGCGGTTCAAAACGCGCGTCTTCTTCAATCTCAGCGTTg > 8:709109/1‑140 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATATTAAAAATCATATACCAAATCCAACCGGATATCCTGCGGTTAAAAACGCGGTTCGTAGTCAAACACAGCCttt > 7:1147529/1‑139 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTTTTTATTACGATGATATCTTGATCTTCATAGACGATATACAGCGGGGTATACTGCGGTTGAAAAAGCGGTTCTTCTTAAATATCCGCGTTg > 6:920017/1‑140 (MQ=255)
ccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATTACGATGATATCTTCAACTTGATAGACGATATCCAGCGGGATATACTGCGGGTCAAAACGCGGTTGTTAGTGAATATCAGCGttt > 2:491186/1‑137 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGc < 5:3553/140‑1 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTTTTTATTAAGAAGATATATTAATCTTCATAGACGATATACCGCGGGATATACAGCGGGTGAAAACACGCTTCTTCTTCAATATAAGCGGTGAtt > 1:1171292/1‑137 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGTTATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATATCAGCGTTGATGGc > 6:270989/1‑140 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGATATCTTCATCTTAATAGACGAAATACAGCGGGATATACTGCGGTTCAAAACGCGCGTCTTCTTGAATCTCAGCGTTGATGGc > 4:222253/1‑140 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTAATGACGATGATATATTCATAATCATAGACCATATACAGCGGGATATACTTCGTGTCAAAACGCGCTTCTTCTTCAATATAAGCGGTTATGGc > 8:926320/1‑140 (MQ=255)
cGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTTATGACGATTATATATTAATATTCATAGAAGATATCCAGCGGGATATACTGCGGTTGAAAACTCGCTTATTATTAAATCTCAGAGTTGATggg > 1:254269/1‑137 (MQ=255)
cGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTGATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGAAggg > 2:989280/1‑137 (MQ=255)
cGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTTTTAATGACGATGATATCTTCATCTTCATAGACGATATCCCGCGGGATATACTGCGGGTCACAAAGCGCGTCTTCTTCATTCTCCGCGTTGATTGc > 2:1100966/1‑138 (MQ=255)
gtgaCCCGCGCCCGGATGTACCCACAGGTCGCGTGTTTTATTAATGACGCTGATATCTTCATCTTCATAGACGATATCCAGCGGGAGATACTGCGGGTCAAAACGCGCTTCTGCTGCACTCTCCGCGTTGATGGCCACCt < 6:703279/137‑1 (MQ=255)
ccGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCg < 5:1177150/140‑1 (MQ=255)
ccGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCg < 7:1084482/140‑1 (MQ=255)
ccGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTAATGACGATGATATCTTCATCTTCATAGACGCTATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTGTTCAATCTGAGCGTTGATGGCCCCCTGCTCg > 4:460390/1‑140 (MQ=255)
gcCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCGTCAATCTCAGCGTTGATGGCCACCTGCTCGCCAc > 6:568819/1‑140 (MQ=255)
cAGGATGTACCACCAGGTCGCGTTGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCGTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCAccc < 5:664566/140‑1 (MQ=255)
aGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCa < 3:472642/140‑1 (MQ=255)
gATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTGATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTGAATCTCAGCGTTGATGGCCCCCTGCGCGCCACCCCAt > 6:370245/1‑140 (MQ=255)
gATGTACCACCAGGTCGCGTGGTTTATTAATGACCATGATATGTTCATCATAATAGACGATATCCCGCGGGTTATACTGCGGGTCAAAACCCGCTTCTTCTTCAATCTCAGCCTTGATGGCCACCCTCGCGCCACCCaaa > 6:395730/1‑139 (MQ=255)
tACCACCAGGTCGCGTGGTTTATTAATGACTATTATATCTTCATCTTCATAGTCGATATCCAGCGGGATATCATGCGGTTCAAAACGCGCTTCTTCTTCTATCTCAGGGTTTATGGCCACCTGCTCGCCACCCAATACtt < 5:515606/140‑1 (MQ=255)
accaccAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTAAAAACGCGCTTGTTCGTCCATCTCAGCGTTGATGGCCACCTGCTCGGCCCCCAATACttt > 4:574585/1‑140 (MQ=255)
caccaGGTCGCGTGGTTTATTAATGACGATGATATCTTCATATTCATATAAGATATACAGCGGGATATACTTCGGTTAAAAAAGCGCTTCTTCTTCAATATCAGCGTTTATGGCCACCTGCTCGCCACCCAATTCttt > 1:698500/1‑138 (MQ=255)
caccaGGTCGCGGGGTTTATTAAAGACGATGATATCTTCATCTTAATATACGAAATACAGCGGGATATACTGCGGTTAAAAACGCGCTTCATATTCAATATCAGCGGTGATGGCCCACTGCACGCCCCCCAATAAttt > 2:992495/1‑138 (MQ=255)
caGGTCGCGTGGGTTATTAATGACGATGATATCTTCATCTACATAGCCGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCGTCTTCTTCAATCTCAGCGTTGATGGCCACCTTCTCGCCACCCAATAATTtttctt > 8:346868/1‑140 (MQ=255)
aGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTtttcttt < 7:236897/140‑1 (MQ=255)
aGGTCGCGTGGGTTATTAATGACGATGATATATTCATCTTAATAGACGATATACAGCGGGATATACTGCGGGTCAAAACGCGCGTCTTCTTCAATCTCATCGTTGATGGCCACCTGCTCGCCCCCCCATACattttgg > 1:956998/1‑136 (MQ=255)
ggTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTtttctttc > 4:619910/1‑140 (MQ=255)
ggTCGCGTGGTTTATTAATGACGATGATATATTCATCTTCATAGACGATATACAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAAAACTTtttattta > 6:328425/1‑139 (MQ=255)
ggTCGCGTGGTTTATTAATGAAGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATACAGCGGTTCAAAACGCGCGTCTTCTTCAATATCAGCGTTGATGGCCACCTGCTCGCCACCCAAAACTTtttgttta > 4:975534/1‑139 (MQ=255)
tCGCGTGGTTTATTAATGACGATGATATATTCATCTTAATAGACGATATCCAGCGGGATATCCTGCGGTTAAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCAGCGCGCCACCCAATACTTtttattta > 2:283676/1‑137 (MQ=255)
cgcgTGGTTTATTCATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGAGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 8:813219/140‑1 (MQ=255)
cgcgTGGTTTATTATTGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 3:817749/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 3:602819/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 3:359797/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 3:1155581/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACAATATCCAGCGGGATATCCTGCGGATCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCg < 2:421419/138‑1 (MQ=255)
gcgTTGGTTATTAATGAAAAAGATAAAATCATCATCATACACGAAATACACCCGGATATCCTGCGGTTCAAAAAGCCCGACTTAGTCAAACTCAACATAGATGTCCACCTCCACGCACCCCAAAACATtttcattctg > 2:259851/1‑136 (MQ=255)
gcgGGGTTTATTACTGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGCTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGCt < 7:801791/140‑1 (MQ=255)
cgTGGTTTATTAATGACGATGATATATTCATCTTAATAGACGATATACAGCGGGATATACTGCGGGTCAAAACGCGCTTCTTATTCAATCTAAGCGTTGCTTGCCACCAGCTCGCCCCCCCAAACTTTTTCTTTCGGcgt > 4:864141/1‑138 (MQ=255)
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GGCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGCTT > NZ_CP022686/1370420‑1370693
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
