Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,370,556 |
T→G |
13.8% |
P99P (CCA→CCC) |
rluD ← |
23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,370,556 | 0 | T | G | 13.8%
| 385.9
/ 16.6
| 230 | P99P (CCA→CCC) | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| Reads supporting (aligned to +/- strand): ref base T (96/96); new base G (36/2); total (132/98) |
| Fisher's exact test for biased strand distribution p-value = 4.77e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 231 total aligned reads displayed.
CAGGCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGCTT > NZ_CP022686/1370418‑1370693
|
cAGGCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGTTAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTg < 6:392788/140‑1 (MQ=255)
ggCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGt < 5:518005/140‑1 (MQ=255)
gCCGGTGGTGTCTTTATCCCGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGtt < 2:1074783/140‑1 (MQ=255)
gtggtgTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTttatt > 2:644095/1‑140 (MQ=255)
tggtgTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCATTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTttatta < 2:310599/140‑1 (MQ=255)
tggtgTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTttaatt > 2:368918/1‑137 (MQ=255)
tggtgTCATTATCCAGACGATTGACGATGCCCGCACGCGGAAAATCGTCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCCGGATACCCTCGCCAGGATGTACAAAAAGGTAGC‑GTGGTttattt > 1:311274/1‑139 (MQ=255)
gtCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAAt < 3:247165/138‑1 (MQ=255)
tCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGAc > 2:912909/1‑140 (MQ=255)
ctctATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACg < 1:586371/137‑1 (MQ=255)
cTTTAGCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCATTGGGCGGATAGTAATGACGCAACGCATTCAGTACCGTACCATCGGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGTTTATTAATGACg < 6:466355/140‑1 (MQ=255)
atttATCCAGACGATTGACGATGCCCGCACGAGGTACATCGGCAATGGTCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACg < 7:746777/139‑1 (MQ=255)
tATCCAGATGATGGACGATGCCCGCACGCGGTACATCGGCAATGTGCGGAGAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCTCGCGAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACga < 4:1057565/138‑1 (MQ=255)
aaTCCAGACGATGGACGATGCCCGCACGCGGGACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACga < 3:167384/137‑1 (MQ=255)
aTCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCTC‑GTTGTTTATTAATGACgatga > 8:1077381/1‑140 (MQ=255)
aTCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGATTTTTTATGACgcttt > 5:83225/1‑136 (MQ=255)
tCCAGACGATGGACGATGCCCGCACGCGGTAGATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTTATGACgatg < 4:1133171/138‑1 (MQ=255)
tCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACgatgat < 1:858127/140‑1 (MQ=255)
tCCAGACGATGGACGATGCCCGCACGCGGTACAGCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACgatgat < 2:197866/140‑1 (MQ=255)
ccAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGTGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATAAATTACgatga > 4:115734/1‑138 (MQ=255)
ccAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGTGTTTTTTAATGACgatga > 4:557227/1‑138 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCACCGCAATCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGAGTAATAATGACGATGATaact > 2:556949/1‑140 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATatct > 8:403868/1‑140 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACAACGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGAAACATCCGGGTTACCCCCGCAAGTATGAACCACCAGGTCGC‑GTCGTGTATTAAAGACgatccaatat > 1:605847/1‑133 (MQ=255)
cgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATatct > 3:36590/1‑138 (MQ=255)
atggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATatcttcat < 6:436092/140‑1 (MQ=255)
cgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATAtcttcatcttca < 6:1010823/140‑1 (MQ=255)
gatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGTAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATcttcatcttcat < 8:342320/140‑1 (MQ=255)
gatgCCCGCACGCGGTACATCGGCAATGGGAGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATcttcatcttcat < 6:51471/140‑1 (MQ=255)
atgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTGTTTTAATGACGATGATATgttcatcttgatt > 8:518525/1‑139 (MQ=255)
gCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGa > 2:683814/1‑140 (MQ=255)
ccGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACg < 7:362744/140‑1 (MQ=255)
ccGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGTTTATTAATGACGATGATATATTCATCTTCATAGa > 4:930853/1‑138 (MQ=255)
ccGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGGTACCCGCGACAGGATGTACCACCAGGGCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGa < 3:1095144/138‑1 (MQ=255)
cgcgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATc < 7:367190/140‑1 (MQ=255)
gggTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATc < 3:457747/137‑1 (MQ=255)
ctgTACATCTGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCAGGGTGACCCGCGCCAGGATGGACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 1:950952/138‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGCCGATGATTTCGTCATCTTCATAGCCGatttgcc > 8:171107/1‑135 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 1:697585/140‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 2:138764/140‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 6:929455/140‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTGGATTAATGACGCTGCTATGATCATCTTCATAGCCGCTATCCa > 5:946471/1‑140 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACAACCAGGTCGC‑GTGGTTTATTTATGACGATGATATCTTCATCTTCATAGACGATATACa > 8:790635/1‑140 (MQ=255)
tACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCg < 1:1177767/140‑1 (MQ=255)
aaTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATc < 4:448204/138‑1 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTTTTAATTACGATGTTTTATTCATCATCATTTACGATATCACCCGGGatatagtt > 7:101009/1‑136 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAAt < 6:826386/92‑1 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGTTTATTAATGACGATGATATCTTCATATTCATATACGCTATCCAGCGGGATATccag > 1:433516/1‑138 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGTTTAATAATTAAGAAGTTTTAATCATCTTGATAGACGATTAACAGCGGGCTATACtt > 5:390256/1‑139 (MQ=255)
tGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGc < 1:683814/140‑1 (MQ=255)
gggCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGTTTTTTAATGAAGAAGCTATCTTCAACTTCATAGCCGCTATCCAGCGGGATATACTg > 4:991714/1‑138 (MQ=255)
gATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATTTACCAACAGGTCGC‑GGGGTTTATTAACGACGATTATATATTCATCTACAGAGACGATATGAAACGGGAGTACCTGCGGttaa > 8:833883/1‑138 (MQ=255)
gATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTGGATTATTGACGGATATATGTTGATATTAATAGACCGTATAAAGCGGGATATACTGCGGttaa > 1:436398/1‑138 (MQ=255)
aTAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTCCCACCAGGGCGC‑GTGGGTTATTAATGACGATGATATCTTCAACTTCCTAGACGATATCCCGCGGGCTATACTGCGGTTCaa > 7:859739/1‑140 (MQ=255)
aTAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGTTTATTAATGACGATGATAAATTAATCTTAATAGACGATATCCAGCGGGATATACTGCGGTTCaa > 7:821023/1‑140 (MQ=255)
aTGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTTATAAAGATGTTATCGTAATCTTAATAGACGATATCCAGCGGGATAACCTGCGGGTCAATAcgcg > 8:1049195/1‑140 (MQ=255)
aTGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAAcgcg < 8:661578/140‑1 (MQ=255)
aaGCAACGCATTCAGTACCGTACCATCCGGGTTTCCAGCGACAGGATGTACCTCCTGGTCGC‑GTGGGTTATTAATGACGATGATATCTTCATCTTCATAGATGTTATCCAGCGGGATATCCTGCGGTTCAAAACgcgc < 4:1007398/138‑1 (MQ=255)
aaGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGctt < 8:221909/140‑1 (MQ=255)
aGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGcttc < 7:1074556/140‑1 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGGTTTTTAATGACGATGATATATTCATATTCATAGACGATATCCAGCGGGGTATCCAGCGGTTCAAAACGCGcttcttct > 1:1159176/1‑140 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGGTTTTTAATGACGATTATATATTCATCTTAATAGACGATATACAGCGGGATATACTGCGGGTCAAAAAGCGcatcttgt > 1:570361/1‑138 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACAACCAGGTCGC‑GTGGTTTATTAATTACGATTATATCTTGATATTCATAGACGATATCCCGCGGGATATCCTTCGGTTAAAACAGCGcttcttgg > 1:533760/1‑138 (MQ=255)
aCGCATTCAGTACCGTACAATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATTACGATGTTATATTAATCTTCATAGACGCTATACCGCGGGATATCCAGCGGATCAAAAAGCGcgtattct > 7:153054/1‑140 (MQ=255)
cGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGcttcttctt < 1:103732/140‑1 (MQ=255)
cGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAAAGACGATGATATCTTCAACTTAAAAGACGATAACCAGCGGGATAAACTACGGTTCAAAACGCGcatcttctt > 6:602974/1‑140 (MQ=255)
gCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCg < 4:1058215/106‑1 (MQ=255)
gCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCttcttcttc < 7:971437/140‑1 (MQ=255)
cAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAAtct < 5:880460/140‑1 (MQ=255)
cAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAAt < 3:69948/138‑1 (MQ=255)
cAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAAt < 4:1162685/138‑1 (MQ=255)
taccgtaccATCCGGGTTACCCGCGCCAGGATGTCCCACCAGGTCGCGGTGGTTT‑TTAATGAAGGAGATATCTTAATATTCATATAAGATATCCAGCGCGATATCCTGCGGTTCAAAAAGCGCTTATTTATCAAtcaa > 4:38865/1‑136 (MQ=255)
taccgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAAtctc < 4:161426/138‑1 (MQ=255)
cgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGc < 3:426416/138‑1 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCCCCAGGTCGC‑GTGGGTTATTAATTACGAAGATATCTACATCTTCATAGACGATATCCAGCGGGATATCCTGAGGTTAAAAACGCGCTTGTTCTTCAAACTAAGCGTTg > 2:687300/1‑140 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTTTTATTGACGATGATATCTTCATCTTCATTGACGATATACAGCGGGATATCCTTCGGTTCAAAACGCCCTTCTTCTTAAATATAAGCGTTg > 8:641163/1‑140 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATACAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGGTg > 1:841366/1‑140 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGGTTATTAAATACGATGCAATCTTCATCTTAATAGACGATATACAGCGGGATATACTGCGGGTCAAAACGCGCTTCTTGATCAATCTAAGCGttt > 5:710031/1‑139 (MQ=255)
ccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATTACGATTATTTATTAATGTTCATAGACGATAAACAGCGGGATATCCTTCGGTTCAAAACGCCCTGATTCTTCAATCTAATCGTTg > 3:850045/1‑138 (MQ=255)
ccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGTTTATTAATGAAGATGATTTCTTAATCTTAATAGACGATATACAGCGGGATATCCTGCGGTTCAAAACGCGCTTGATAGTCAATCTCAGCGTTg > 4:809616/1‑138 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGa > 6:22130/1‑52 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa > 6:626121/1‑85 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTAATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTAAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGc > 8:427125/1‑140 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGGTTATTAATGACGATGATATCTTCATCTTAAAAGACGATATCCAGCGGGATATACTGCGGGTCAAAACGCGCGTCTTGTTCAATCACAGCGGTGATGGc > 2:987506/1‑140 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GGGGGTTATTAATGACGAAGATATCTTAATATTCATAGACGCTATCCAGCGGGCTATCCTGCGGGTCAAAACCCGCTTCTTCTTAAATCTAAGCGTTGATGGc > 5:544875/1‑140 (MQ=255)
cGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTTTTTATGACGATGTTATCTTAATCTTCATAGACGATATACACCGGGGTATCCTGCGGTTGAAAAAGCGCGTCTTATTGAAACTCAGCGGTGATggg > 3:1012582/1‑137 (MQ=255)
cGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTTTTAATGCCGAGTAAATATTCATGATCATAGACCATATACAGCGGGATATCCTGCGGGTCAAAACGCGCTTCTTATTAAATCTCAGAGTGGATGGccc > 8:161215/1‑139 (MQ=255)
gggTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGTTATCTTCATCTTCATAGACGTTATCCAGCGGGATATCCTGCGGTTCAAATCGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCAc < 7:580885/140‑1 (MQ=255)
tACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTTTTAATGACGATGATATCTTAATCTTCATATACGATATACAGCGGGCTATCCTGCGGGTCAAAACGCGCGTATTCTTCAATCTAAGCGTTGATGGCCAcca > 4:196868/1‑137 (MQ=255)
ccGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCg < 7:879097/140‑1 (MQ=255)
cgcCAGGATGTACCACCAGGTCGC‑GTGGGTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGGTCAAAACGCGCTTGTTGTTCAATCGAAGCGTTGATGGCCACCGGCTCGccc > 8:716083/1‑139 (MQ=255)
gcCAGGATGTACCACCAGGTCGC‑GGGGGTTATTAATGACGCTGATATCTTGATCTTGCTAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCGTGTTCTTGAATCTCAGGGTTGATGGCCCCCTGCTGGcccc > 6:295886/1‑138 (MQ=255)
gcCAGGATGTACCACCAGGTCGC‑GGGGGTTATTAATGACCATGATAGATGCATCTGAATAGACGAAATCCCGCGGGTGATGCTGCGGGTCAAAACGCGCGTCTTCTGGCATCTCAGCGATGCTGGGCACCTGCGCGCCAc > 2:714548/1‑140 (MQ=255)
cAGGATGTACCACCAGGTCGC‑GTGGTTTTTTAAAGACGATGATATATTCATCTTAATAGACGCTATACAGCGGGTTATCCAGCGGTTAAAAACGCGCTTCTTCTTGAAGGTCGGGGGTGATGGCCACCTGCTAGCAAc > 4:291345/1‑138 (MQ=255)
cAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCAccc < 5:351732/140‑1 (MQ=255)
caccaGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCAAATTCATAGCCGATATCCCGCGGGTTATGCTGCCGTTCAAAACGCGCATCTTCTTCCATCTCAGCGTTGATGGCCACCGGCTCGCCCCCCAATACgtt > 4:610469/1‑138 (MQ=255)
ggTCGC‑GTGGTTTATTAATGACGATGATATCTTAATCTTAATAGACGATATACAGCGGGGTTTCCTGCGGTTCAAAACGCGCTTCGTCTTCAAGATCAGCGTTGATGGGCACCTGCTCGCCCCCCAATACTTtttctttt > 6:1002286/1‑139 (MQ=255)
tCGC‑GTGGTTTATTAATGAAGATGATATATTAATCTTAATATACGATATACAGCGGGGTTTACTGCGGGTCAAAACGCGCGTGTTCTTAAAGCGCAGCGTTTATGGCCCCCATCTCGCCACCCAATAATtttttttta > 4:701395/1‑137 (MQ=255)
cgc‑gTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGTGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 2:655602/140‑1 (MQ=255)
cgc‑gTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGc < 2:874306/140‑1 (MQ=255)
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CAGGCCGGTGGTGTCTTTATCCAGACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGC‑GTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGCTCGCCACCCAATACTTTTTCTTTCGGCTT > NZ_CP022686/1370418‑1370693
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
