Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,017,622 |
A→C |
17.0% |
K839N (AAA→AAC) |
metH → |
methionine synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,017,622 | 0 | A | C | 17.0%
| 292.1
/ 8.6
| 178 | K839N (AAA→AAC) | metH | methionine synthase |
| Reads supporting (aligned to +/- strand): ref base A (88/54); new base C (3/33); total (91/87) |
| Fisher's exact test for biased strand distribution p-value = 2.87e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 196 total aligned reads displayed.
CTAAAGAAGTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAG > NZ_CP022686/3017483‑3017760
|
gTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCacac > 8:977661/1‑140 (MQ=255)
tGAATGCTTATTTGATTGGCCTTTCGGGGCTGATCACGCCGTGGCTGGACGAGTTGGTTAACGGGGCGAAAGATTTGGAGCGGCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACAcg < 4:274537/140‑1 (MQ=255)
tGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACAcg > 1:186441/1‑140 (MQ=255)
gAATGCTGATTTGATTGGCCTTTCGGTGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTAATGATTGGCGGCGCGACCCCCTCAAAAGCGcacaa > 5:184282/1‑137 (MQ=255)
aaTGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTTCAGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACAcggc > 7:254668/1‑140 (MQ=255)
aaTGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCCCCTCAAAAGCGCACAcggc > 4:752903/1‑140 (MQ=255)
tGCTGATTTGATTGGCCTTTCGGGGCTGCTCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCCCCTCAAAAGCGCACAcggc > 6:291847/1‑138 (MQ=255)
tGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCTGCGCGACCACCTCAAAAGCGCACAcggcgg > 8:341005/1‑140 (MQ=255)
ttGGCGTTTGGGGGCTGATACCGCCGTGGCTGGACGTGATGTTTAAGGGGCCTAAAGTTTGGGCGCGTCTGGGCTTCACCTTTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 8:540089/140‑1 (MQ=255)
ttGGCCTTTCGGGGCTGATCACGCCGGCGCGGGACGAGATGGTTAACGTGGCGAAAGAGATGCAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAg < 1:813143/140‑1 (MQ=255)
ttGGCCTTTCGGGGCGGATCACGCCGTCGGTGGACGAGATGGTACACGTGGCTAAAGAGTTGGAGCGTCAGGGCGTCACCATTCCGCTATTGTTTGGCGGCGCGACCACCTCAACAGCGCACACGGCGGTGAAAATCGAg < 2:484202/140‑1 (MQ=255)
ttGGCCTTGCGGGGCTTATCACGCCGTCGCGGGCCGAGATGGTTAACGTGGCTAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTTATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 8:127919/140‑1 (MQ=255)
ttGGCATTTCGGGGCTTATCAGGCCGTGGCTGGACTTTATGGTTACCGTGTCTAAAGAGTTGGAGCGGCTGGGCTTCACCATTCCGCTTTTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 2:801522/140‑1 (MQ=255)
ttGCCCTTTCGGGGCTGAACAGGCGGGCGGTGGACGAGATGGTTACCGTGGCGAAAGAGATGGCGCGTCCGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 4:1033238/140‑1 (MQ=255)
tgggCGTTTGGGGGATGATCCCGCCGTCGCTGGACTAGATGGTTAACTGGGCGAAAGTGATGGCGCGTCAGGTCTTCACCATTCCGCTATTGATGGGCGGCGCGACCACCTAAAACGCGAACACGGCGGTGAAAATCGAg < 2:538349/138‑1 (MQ=255)
tgggCCTTTGGGTGCGGTTCACGCCTGCGCTGGCAGTGAGGGTTACCGTGTCTAAATAGATTGCGCGGCTGGGCTTCACCATTCCGCTATTGATGGGCGGCGCTACAACCTCAAACTCGAACACGGCGGGGAAAATCTAg < 2:482087/138‑1 (MQ=255)
tgggCCTTTCGGGGCTGATCACGCCGTCGCTGTACGAGAGGGTTAACGTGGCGAAAGAGTTGGAGCGTCAGGGATTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 7:323951/138‑1 (MQ=255)
gCCTTTCGGGGCTTATCAGGCGGTCGCGGGACTTTTGTGTTAACGTGGCTAAATCTCTGTTGCGGCAGGGCTTCACCATGCCGCTATTGATTGGCGGCGCGACAACCTAAAACGCGCACACGGCGGTGAAAATCGAGCAg < 3:247569/140‑1 (MQ=255)
ccTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGTCGGTGAAAATCGAGCAgc > 4:658317/1‑139 (MQ=255)
ccTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGAGCAAATCGAGCAGa > 1:473532/1‑140 (MQ=255)
cTTGCGGGGCTGAGCACGCCGGCGCGGGACGAGAGGGTTAACGGGGCGAAAGCGATGGAGCGGCCGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGaa < 2:439218/140‑1 (MQ=255)
tttCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAAc > 4:704930/1‑140 (MQ=255)
cTGATCACGCCGTCGCTGGCCGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCgg > 1:151014/1‑140 (MQ=255)
tGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCCCCATTCAGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGc > 3:628837/1‑140 (MQ=255)
aTCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGccc > 3:532883/1‑140 (MQ=255)
cACGCGGTCGCGGGACGAGATGGTTAAGGTGGCGAATGAGCTGGAGCGGCAGGGCTTCACAATTCCGATATTGAGTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGa < 8:663521/140‑1 (MQ=255)
cggCCGTCTCGGCACGATATTGTAACCGGGGCAAAAGAGAGGGAGCGCACGGGCTACACAAGTCCGGTATTTATTGGCGGCGCGACCACCTCAAAATCGCACACGGCTGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 2:1044858/138‑1 (MQ=255)
ccgcgggcGCTGGCCGATTTGGTTAACGTGGCTAAATAGAGGGAGCGTCAGGGCGGCACCATTCGGATATGGATTGGCGGCGCGACACCCCCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACCGCGGCCCGAc < 4:964786/133‑1 (MQ=255)
ccGCCGTCGCTGGCCTAGTTGTTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTTATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 2:604594/139‑1 (MQ=255)
ccGCCGTCGCTGGACGAGTTGTTTACCGTGGCTAAATAGATGGCGCGGCCGGGCTACACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCg < 5:658854/137‑1 (MQ=255)
ccGCCGTCGCTGGACGAGATGGTTACCGTGGCTAAAGAGATGGAGCGGCAGGGCTTCACCATACCGCTATTGATTGGCGGCGCGACCACCTAAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 3:380301/139‑1 (MQ=255)
ccGCCGTCGCTGGACGAGAGGGTTAACGTGGCGAAAGAGTTGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 3:789295/139‑1 (MQ=255)
aCGCCGTGGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCCGGGCTTCACCATTCCGCTATTTATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 2:250965/140‑1 (MQ=255)
aCGCCGTCGCTGTTCGCGATGGTACAGGTGGAGAAATTGAGGTCGCGTCAGTGCTTCACCATTCCGCTATTGATTGGCGTCGCGCAAAACTCAAACGCTCACACGGCGGTGAAAATAGAGCAGAACTACAGCGGCCCg < 6:792684/138‑1 (MQ=255)
aCGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACCGCGGCCCg > 5:54215/1‑138 (MQ=255)
gTCGCTGGACGTGATGGTTAACGTGGCTAAAGTGATGGCGCGTCTGGGCTTCACCATTCCGATATTGATTGGCGGCGCTACCACATAAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGgtgt < 1:565101/140‑1 (MQ=255)
gTCGCGGGCCGAGATGGTTCCGGGGGCGCAAGAGAGGGCGCGTCCGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGgtgt < 2:730723/140‑1 (MQ=255)
cTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCCCCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTAt > 5:562340/1‑138 (MQ=255)
taCGATATTGTTAACGTGGCGAAACCTATGGATCGTCAGTGCTTCACCATTCCGCTATTGATTGGTGGCGCGACAACATAAAAAGCGAACAAGGCGGTGAAAATCGAGCAGAACTACAGCTGCCCGACTGTGTAtgtg < 6:454949/137‑1 (MQ=255)
gACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCa > 4:772576/1‑140 (MQ=255)
cGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGCCCCCCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGACCTACAGCGGCCCGCCGGTGTATGTGCAgc > 2:246963/1‑139 (MQ=255)
cGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGa > 4:177205/1‑140 (MQ=255)
tgaTGTTTAACGTGGCGAAAGAGATGTCGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCCCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAAc < 2:722850/139‑1 (MQ=255)
cgaTGGTTAACGTTGCTAAATCGATGGCGCGTCCGGGCTACACCATTCCGATATTGATTGGCGGCGCGACCACATCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAAc < 2:190553/139‑1 (MQ=255)
ttACCGTGGAGAACGAGAGTGAGCGTCAGGGCTACCCCATTCCGCTATTCATTGGCGGCGCGACCACCACAAACGCGAACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcg < 3:47857/140‑1 (MQ=255)
ttAACGTGGCGATAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcg < 1:301986/140‑1 (MQ=255)
accGTGGCGAACGAGATGGAGCGGCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcg < 6:629387/136‑1 (MQ=255)
aaCGTGGCGAATCAGATGGCGCGTCTGGGCTTCACCTTTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcgcg < 3:982841/140‑1 (MQ=255)
aaCGTGCCTAAACTGATGGCGCGTCCGGGCTTCACCATTCCGCTATTTATTGGCGGCGCCACCACATAAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcgcg < 3:137476/140‑1 (MQ=255)
gTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCAc > 3:732522/1‑140 (MQ=255)
gCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCAcc > 5:472443/1‑138 (MQ=255)
gCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGt > 4:453756/1‑140 (MQ=255)
gCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGt > 4:715498/1‑140 (MQ=255)
cGAAAGAGATGGAGCATCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGtt > 4:782168/1‑140 (MQ=255)
cagaTGGAGCGTCCGGGCTTCACCATTCCGCAATTGATTGGCGGCGCGACCACCTCAAAAGCGAACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTtggtgt < 2:1079957/139‑1 (MQ=255)
gCGTCAGGGCTACACCATACCGCTATTGATTGGCGCCGCCACCACCACAAACGCCCACACGGCGGGGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTggc < 6:562697/138‑1 (MQ=255)
ggacgtgCTTCACCATTCCGCTTTTTATTGGCGGCGCGACCACCTAAAAAGCCCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGgcggcg < 1:598764/134‑1 (MQ=255)
cgggCTGCACCATTCCGATATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctg < 4:361003/139‑1 (MQ=255)
cgggCTGCACCATCCCCCTATGGATTGGCGGCGCGACCCCCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctg < 7:809679/139‑1 (MQ=255)
aGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAACAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGgcggcgg > 6:605630/1‑137 (MQ=255)
aGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctg > 2:70577/1‑140 (MQ=255)
ggCTTCACCTTTCCGCTATTGATTGGCGGCGCTACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctg < 6:849072/138‑1 (MQ=255)
ggCTTCACCAAGCCGCTATTGATTGCCGGCGCGCCCCCCACAAACGCCCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctgct < 7:377497/140‑1 (MQ=255)
tCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGGGAAAATCGCGCAGAACTAACGAGGCCCGACGGAGAATGAGCAGAACGCATCCCGCACCATAGGTGGGGTGGCGGCcctgctgacc > 3:431929/1‑136 (MQ=255)
tCACCAATCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTAAAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGAGGTGGCGGCGCTGCTTAcc > 4:668469/1‑140 (MQ=255)
cACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 8:586578/64‑1 (MQ=255)
cACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg > 7:586578/1‑64 (MQ=255)
cACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGACCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTccc > 4:153857/1‑139 (MQ=255)
aCCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTAc > 5:618844/1‑72 (MQ=255)
aCCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGa > 4:1066845/1‑140 (MQ=255)
ccATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCg > 5:140819/1‑138 (MQ=255)
cATTCCGATATTGATGGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCTaca < 8:568078/140‑1 (MQ=255)
ttCCGCTATTGATTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGacaca > 2:328883/1‑139 (MQ=255)
ttCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCAGACACt > 2:64315/1‑140 (MQ=255)
tCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTc > 2:821887/1‑140 (MQ=255)
tCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTc > 4:24689/1‑140 (MQ=255)
ccGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCTCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACt > 6:978417/1‑138 (MQ=255)
cGCTATTGATTGGCGGGGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAg < 7:954110/140‑1 (MQ=255)
cTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAgcg > 3:1031164/1‑140 (MQ=255)
ttgttgggcggcCCGCCCACCTCAAACGAGCTCTCGGCGTTGATAATCGAGCCGAACTACCGCGGCCCGACGGGGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCTACACTCAGCGCga < 3:959724/134‑1 (MQ=255)
ttgattgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCga > 7:127538/1‑140 (MQ=255)
gcggcgCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGAtt > 5:883843/1‑138 (MQ=255)
gggcgCGACCACCTAAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCg < 8:961281/139‑1 (MQ=255)
cggcgCGCCCCCCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACTGGGTATGTGCAGAACGCAGCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCg < 1:1002338/140‑1 (MQ=255)
cggcgCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCg > 4:897631/1‑140 (MQ=255)
gcgcGACCACCTCAAAAGCGCACACGGCGGTGAAAATAGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGCCGCTGCTTGCCGACACTCAGCGCGATGATTTCGtt > 8:15811/1‑140 (MQ=255)
cccccaccGCAAAAGCGCACACTGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTTGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTg < 5:798634/135‑1 (MQ=255)
cccaccTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCg < 7:445764/139‑1 (MQ=255)
accaccTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCg < 4:521419/140‑1 (MQ=255)
accaccTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCg < 4:454672/140‑1 (MQ=255)
accaccTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCt < 6:100953/138‑1 (MQ=255)
accaccTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCg < 2:150249/140‑1 (MQ=255)
accaccTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCg < 7:112615/140‑1 (MQ=255)
caccTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTa < 1:1034008/140‑1 (MQ=255)
aaacGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 3:1046441/140‑1 (MQ=255)
aaacGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGAAGAACGCATCGCGCACCGTTGGTGTGGTGTCGGCGCTGCTTTCCGACACTCAGCGCGATGATATCGTTGCTCGTACCCGCa < 1:556455/140‑1 (MQ=255)
aaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGTCACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAg < 4:316014/140‑1 (MQ=255)
aaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAg < 3:214806/140‑1 (MQ=255)
aaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAg < 8:835474/140‑1 (MQ=255)
aaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCGGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 5:296784/138‑1 (MQ=255)
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CTAAAGAAGTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAG > NZ_CP022686/3017483‑3017760
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
