Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,017,622 |
A→C |
11.8% |
K839N (AAA→AAC) |
metH → |
methionine synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,017,622 | 0 | A | C | 11.8%
| 341.6
/ 4.9
| 203 | K839N (AAA→AAC) | metH | methionine synthase |
| Reads supporting (aligned to +/- strand): ref base A (96/74); new base C (2/26); total (98/105) |
| Fisher's exact test for biased strand distribution p-value = 6.15e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 234 total aligned reads displayed.
CTAAAGAAGTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAGG > NZ_CP022686/3017483‑3017761
|
gaagTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAgcg > 3:888920/1‑138 (MQ=255)
tGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCGGGCGCTGGACGAGATGGTTAACGTGGCTAAAGCTATGTAGCTTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACAcg < 2:1221665/140‑1 (MQ=255)
gCTGATTTGATTGTCCTTTCGTGGCTGATCACGCCGTAGCTGGACGAGATGGTGAACGTGTAGAAAGAGATGGAGCGTCAGGGCTTCACCATTACGCTATTTATTGGCGTCGCGACCAGCTCAAAAGCGGACAcggcggg > 8:113620/1‑139 (MQ=255)
cTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACAcggcgg > 3:629762/1‑138 (MQ=255)
tgatttgattGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGGGa > 5:493246/1‑140 (MQ=255)
attGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGCTGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGa > 7:960414/1‑140 (MQ=255)
attGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGa > 1:90938/1‑140 (MQ=255)
ttGGCGTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 8:928183/140‑1 (MQ=255)
ttGGCCTTGCGTGGCTTATCACGCCGTCGCGCGACGATATGGTTAACGTGGCGAAAGAGATGGAGCGGCAGGGCTTCACCATTCCGATATTGATTGCCGGCGCGACCACCTCAAAACCGCACACGGCGGTGAAAATCGAg < 6:1206246/140‑1 (MQ=255)
ttGGCCTTGCGGGGCTGATCACGCCGTCGCTGGACTAGATTGTTAACGTGGCGAAAGAGATGTAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 8:225634/140‑1 (MQ=255)
ttGGACTTGCGGGGCTGAACACGCCGTCGAGTTCCGATATTGTTACCGGGGCCAATGAGCTGGCGCGTCAGCGCTTCCACATACCGCTTTTTTTTGGCGGCGCGACCACCTCAATCGCGCACACGGCGGTGAAAATCGAg < 6:1044392/140‑1 (MQ=255)
tGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGc > 1:1346328/1‑140 (MQ=255)
ccTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGa > 1:1091385/1‑140 (MQ=255)
gggCTGCTCACGCCGTGGGGGGACGATATGGTAAACGTGGCGACAGTGAGGGAGCGTCTGGGCGTCACCATTCTGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAg < 8:322150/140‑1 (MQ=255)
gCTGATCACGCCGTCGCTGGACGAGAGGGTTACCGTGTCGAACGCGATGGTGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCg < 8:1181763/140‑1 (MQ=255)
cTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCgg > 7:581620/1‑140 (MQ=255)
gATCACGCCGTCGCTGGACGAGATTGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGTCGCTACCCCCTCTAAAGCGCACACTGCTGTGAAAATCGAGCAGAACTACAGCgg > 3:194052/1‑138 (MQ=255)
gATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCgg > 4:46450/1‑138 (MQ=255)
aTCCCGCCGTCGCTGTACGAGATGGATAACGTGCCGAAAGCGAGGCAGCGTCAGGGCTTCACCATTCCCCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGccc < 2:548475/140‑1 (MQ=255)
aTCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGGCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGc < 4:1183193/138‑1 (MQ=255)
ctcGCCGTGGCTGGACGAGTTGGTTAACGTGGTGTACTAGAGGGAGCGTAAGGGCTTCACCTTTCCGCTTTTGATGGGCGGCGAGAACACATAAAATTCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGccc < 4:1226085/136‑1 (MQ=255)
cACGCCGTCGCTGGACGAGAGGGTAAACGGGGCTAAAGCGAGGGAGCGTCCGGGCTTCACCATTCCGCTATTCATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGccc < 4:599968/138‑1 (MQ=255)
ccggcGTCGCTGGACTAGCTTGTTAACGTGGCGAAAGAGAGGGCTCGTCCGGGCTGCACCATTCCGCAATTGATTGGCGGCGCGCCCACCTCAAAACGGCACACGGCGGTGAAAAGCGAGCAGAACTACAGCGGCCCGAc < 6:226588/136‑1 (MQ=255)
ccGCCGTCGCTGGACGAGATGGTTGACGTGGCGAACGAGATGGAGCGTCAGGGCTTCACCATTCCGATATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 2:955321/139‑1 (MQ=255)
aCGCCGTCGCTGTACGAGATGGTTAACGTGGCTAATGAGATGGAGCGTCTGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACAACATAAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCACg < 4:1085544/138‑1 (MQ=255)
gCCGTCGGTGGCCGAGAGGTTTAACGTGGCTAAAGAGATGGAGGGTCTGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTAAAACGCCAACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACgg < 8:1052191/140‑1 (MQ=255)
cGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAccg > 4:170237/1‑136 (MQ=255)
cGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTAt > 1:1032855/1‑140 (MQ=255)
cGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGACTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTAt > 5:669316/1‑140 (MQ=255)
agaTGGTTAACTAGGAGAAAGAGATGTAGCGTCAGGGCTTCACCATACCGCAATTGATTAGCTGCGCGACAACCTCAAAAACGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGGGTAGGGGCacacc > 8:814239/1‑136 (MQ=255)
agaTGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCCCCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAAc > 5:1157390/1‑140 (MQ=255)
agaTGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGa < 4:497854/138‑1 (MQ=255)
agaTGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAAc > 2:1203382/1‑140 (MQ=255)
gaTGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGAGGCCCGACGGTGTATGTGCAGAACg > 6:501792/1‑140 (MQ=255)
gaTGGTTAACGGGGCGAACGAGATGGAGCGTCAGGCCTTCACCATCCCGCTATTGAGTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGaa < 4:937217/138‑1 (MQ=255)
tGGTAACCGTGGCGAAAGAGAGGGAGCGGCAGGGCTCCACCATTCCGCTATTGATTGGCGCCGCGACCACCACAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCa < 6:783243/140‑1 (MQ=255)
ttAATGTGGCGAACGAGGTGGAGCGTCCGGGCTTCACCATACCGCTATTGTTTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcg < 7:859226/140‑1 (MQ=255)
ttAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcg > 8:446817/1‑140 (MQ=255)
ttAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACACATcg > 2:108274/1‑140 (MQ=255)
aaCGTGGCGAAAGATCTGGTGGGGAAGGGCTTCTCAATTCGCTTTTTTATTGGGGGGGGCACCAGCTCAAAGGGGCACACGGCGTTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcgcg < 8:48245/140‑1 (MQ=255)
aaCGGGGCTAAATAGATGGTGCGTACGGCCTTCACAATTCCGCTATTGTTTGGCGGCGCGACCACATCAAAAGCCCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcgcg < 1:1330082/140‑1 (MQ=255)
aaCGGGGCGAAAGAGAGGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcgcg < 2:1035800/140‑1 (MQ=255)
tGGCTAATGATATGTCGCGTCAGGGCTTCACCATTCCGATATTGATTGGCGGCGCGACCACCGCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCAcc < 5:531124/140‑1 (MQ=255)
gctaaaGATATGTAGCGGCCGGGCTGCACCATTCCGATATTGATTGGCGGCGCCACCACCTAAAAAGCCCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGt < 7:657457/137‑1 (MQ=255)
gCGAATTAGATGGAGGGTCAGGGGTTCACCTTTCCGCTTTTGATTGGCGGCGCGACCACCTCAAATGCGCACACGGCTGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGt < 2:1357593/140‑1 (MQ=255)
cGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACCCGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCTGCACGCATCGCGCACCGtt > 1:209273/1‑140 (MQ=255)
gAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGAACCCGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGt > 3:1264663/1‑138 (MQ=255)
aaGAGATGGAGCGTCCGGGCTTCACCATTCCGCTATTGATGGGCGGCGCGACCACCTCAACAGCGCCCACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTtggt < 7:487163/140‑1 (MQ=255)
aTGGCGCGCCAGGGCTCCACCATTCCGCTATTTATTGGCGGCGCGACCACATCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTtggtgtggt < 7:1180627/140‑1 (MQ=255)
aGCGTCAGGGCTTCTCCATTCCGCTATTGATTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGtggtgg > 3:365273/1‑138 (MQ=255)
gTCCGGGCTGCACCTTTCCGCTATTGATTGGCGCCGCGACCCCCTCAAAAGCGCACACGGCGGTGAAAATCGAGCCGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGgcggcg < 2:224999/140‑1 (MQ=255)
gTCAGGGCTTCACCATGCCGCTATTGATTGGCGGCGCGACCACCACAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTggcgg < 3:466440/138‑1 (MQ=255)
gTCAGGGCTTCACCAATCCGCTTTTGAGTGGCGGCGCGCCCCCCTCAACAGCGCACACGGCGGTGAAACTCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTggcgg < 4:245594/138‑1 (MQ=255)
tCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGgcgc > 2:730578/1‑140 (MQ=255)
tCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTAAAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACAGTTTGTGTGGTGgcggcgg > 2:808844/1‑139 (MQ=255)
gccgggCTTCCACATTCCGCTAGTGATTGGCGGCGCGCACACCTCAAACTCGCACACGGCGGTGAAAAGCGCGCAGAACTACAGCGGCCCGACGGTCTCGGTGCAGACCGCATCCCGCCCCGTTGGGGGGTGggcggctc > 2:877069/4‑138 (MQ=255)
aggggagcacaATTCCGCTATTGTTTTCCGTCGCTACCACATCAAAACCGAACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACGGTTGGTGTGGTGGCGGCgctg < 6:1081874/133‑1 (MQ=255)
aGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGgcgc > 4:764362/1‑138 (MQ=255)
ggCTTCACCATTCCGCTATTTATGGCCGGCGCGACCACCTCAAAACCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctgct < 7:771949/140‑1 (MQ=255)
ggCTTCACCATCCCGCATTTGATGGGCGGCGCGCCCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctgct < 5:317171/140‑1 (MQ=255)
ggCTACCCCATTCCGCTATTGATGGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctgct < 7:238681/140‑1 (MQ=255)
ggCATCACATTTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGACCACGGCGGTGAAAATCGAGCATAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctgct < 6:571310/140‑1 (MQ=255)
tCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg > 2:627518/1‑65 (MQ=255)
cACCATTCCGCTATTGATTGGCGGCGCGACCACCTCNAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCg > 2:1093299/1‑140 (MQ=255)
cACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCTCGCACCGTTGGTGTGGTTGCGGCGCTGATTTCCg > 1:749662/1‑140 (MQ=255)
cACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCg > 1:302012/1‑140 (MQ=255)
cACCATTCCGCTATTGATTGGCGGCGCGACCACCACAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCg < 6:289550/140‑1 (MQ=255)
ttCCGCTTTTGATTGGCGGCGCGACAACCTAAAAAGAGCACACGGCGTTGAAAATATAGCAGAACTACAGCGGCCCGACGGTGTATGTGCATAACGCATCGCTCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCTACACt < 2:283970/140‑1 (MQ=255)
ttCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGCCACt > 6:180269/1‑140 (MQ=255)
ccGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACt > 3:992858/1‑138 (MQ=255)
gCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAgc > 1:483957/1‑140 (MQ=255)
cTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCTCGCACCGTTCGGGTGGTGGAGGCGCAGCTATCCGACACTCAgcg > 8:744111/1‑140 (MQ=255)
cTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAAAGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAgcg > 1:646943/1‑140 (MQ=255)
attgattgGCGGCGAGACCACCTCAAAAGCGCACACGGAGGTGAAAATCGAGAAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACAGTTGGTGTGGTGGCGACGCTGCGTTCCGACACTCAgcg > 3:349928/1‑138 (MQ=255)
ttgattgGCGGCTCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCga > 1:1172550/1‑140 (MQ=255)
ttgattgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCga > 1:954232/1‑140 (MQ=255)
ttgattgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCga > 2:1271644/1‑140 (MQ=255)
ttgattgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCga > 5:1010008/1‑140 (MQ=255)
attgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCgatga > 6:683323/1‑140 (MQ=255)
tgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGAtt > 6:699469/1‑140 (MQ=255)
gcggcgCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCAt > 4:715704/1‑84 (MQ=255)
cggcgCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCg > 2:372474/1‑140 (MQ=255)
gcgcGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGtt > 5:685584/1‑140 (MQ=255)
gcgcGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGAGCTGCTTTCCGACACTCAGCGCGATGATTTCGtt > 5:705451/1‑140 (MQ=255)
gcgACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTAAGCGCGATGATTTCGtt > 3:715737/1‑138 (MQ=255)
accaccTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCg < 6:1100052/140‑1 (MQ=255)
caccTCAAAAGCGACCACGGCGGTTAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTa < 8:1238205/140‑1 (MQ=255)
caccTCAAAAGCCCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTa < 1:326987/140‑1 (MQ=255)
aacaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCg < 3:1015900/135‑1 (MQ=255)
aacaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 1:597755/137‑1 (MQ=255)
aaatGCGCACACGTCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCTCACCGTGGGTGTGGTGGCGGCGCGGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 8:393120/140‑1 (MQ=255)
aaacGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCg < 3:1161602/138‑1 (MQ=255)
aaacGCCCACACGGCGGGGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 7:1043753/140‑1 (MQ=255)
aaaaGCGCACACGGCGGTGAATATAGAGCATAACTACAGCGGCCCGACGGTGGATGTGCTGATCGCATCGCGCACCGTTGGTGTTGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTAGTTGCTCTTTCCCTCa < 2:656912/140‑1 (MQ=255)
aaaaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCg < 4:888920/138‑1 (MQ=255)
aaaaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 7:381182/140‑1 (MQ=255)
aaaaGCCCACAAGGCTGTGAAAATCGAGCAGAACTACATCTGCCCGACGGTGTATGTGCATAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 2:352005/140‑1 (MQ=255)
aaaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGac < 3:895142/105‑1 (MQ=255)
aaGCGCACACGGCGGTGAAACTCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCTCGCACCGTGGGGGTGGTGGCGGCGCGGCTTTCCGACACGCAGCGCGATGATTTCGTTGCTCGTACCCGCAAg < 7:1081011/140‑1 (MQ=255)
aaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAg < 1:182339/140‑1 (MQ=255)
|
CTAAAGAAGTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAGG > NZ_CP022686/3017483‑3017761
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
