Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,020,229 |
T→G |
15.2% |
V133G (GTC→GGC) |
yjbB → |
Na/Pi cotransporter family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,020,229 | 0 | T | G | 15.2%
| 208.8
/ 6.6
| 141 | V133G (GTC→GGC) | yjbB | Na/Pi cotransporter family protein |
| Reads supporting (aligned to +/- strand): ref base T (36/79); new base G (23/2); total (60/81) |
| Fisher's exact test for biased strand distribution p-value = 1.63e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 153 total aligned reads displayed.
CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
|
gtGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTAATCTCACCTTCGATTTATCCTGGCTGTCAGCGTGACTTATTTTTTTCGGCGTGATTTTTTTCCTCGGACGCAAAGAGTCACGGGCCGGGCAACTGGGCCGCGt < 4:625542/139‑1 (MQ=255)
cTGGGTGCAGCTGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 4:22297/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCCCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 3:573707/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCTGACGCAAACAGGCACGCGCCGGGCAACTGGGCCGCGt < 3:477649/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 6:253357/140‑1 (MQ=255)
cTGGGGGGAGAGGGCGGGCCGGCGCTGAGGGCGCGTATTCTCACCATCGATTTATACTGGCTGTCACCTTTACTTATTTTTATGGGCGTGATTATTTTCCTCGGACGCCAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 5:775016/140‑1 (MQ=255)
ggTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCATCGGACGCAAACAGTCACCCGCCGGGCAACTGGGCCGCGTC‑gg > 3:332821/1‑140 (MQ=255)
gCAGCTGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTAt < 3:857176/140‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCTATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACTGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTAt < 5:125211/140‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGt < 8:281069/138‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGt < 7:148244/138‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGt > 8:154505/1‑138 (MQ=255)
aGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTAACGCGCCGGGGAACTGGGCCGCGTG‑GGttttt > 3:178851/1‑139 (MQ=255)
aGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGAAAAAATTCACGCGCCGGGCAAATGGGCCGCGGC‑GGGAttt > 5:285861/1‑139 (MQ=255)
aTGTCGGGACGGCGCTGATGGCGCGTATTATCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGAGGCAAACATTCACGCGCCGGGCAACTGGGCCGGGTC‑GGTCTTg > 2:617401/1‑138 (MQ=255)
tggcGGGACGTCGCTGATGGCGCTTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTc < 3:753492/137‑1 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACGTTCGATTTATCCTGGCTGTCCCCGTTACTTATTTTTATCGGCGTGATATTTTTACTCGTCCGGCAACAGTCACGCGCCGGGGCACAGGGCCGCGGC‑GGTAGTGGtggtgg > 5:646487/1‑135 (MQ=255)
ggccGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGGCACCGTTACTTATTTTTATCGGCGTGTTTTTTTTCGTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTg < 8:390343/135‑1 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTg < 7:606118/138‑1 (MQ=255)
ggACGGCGCGGATGGCGCGTATTCTCACCTGCGATTTAACCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTg < 1:247120/138‑1 (MQ=255)
gACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGTGTTTTTTACTCGGACGCCAACAGTAACGCGCCGGGCAACTGGGCCGCGGG‑GGGTTTGGTGTTgg > 1:741634/1‑138 (MQ=255)
gACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGTCCGCGTC‑GGGATTTGTGTTgg > 8:116/1‑138 (MQ=255)
cGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTGATTTTTATCGGCGTGGTTTTTTTGCTAGGACGCCAACAGTCACGCGCCGGGCAACTGGGGCGCGTC‑GGGTTTGGTCGTgggggg > 5:349967/1‑137 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGC‑GGGATTGGTCTTGGGCTGa > 2:394445/1‑138 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTAGTTTTATCGGCGTTTTTTTTTTAGTCGGACGCACACAGTCACGCGCCGTGCAACTGGGCCCCGTC‑GGTATTTGTCATgggggtatt > 6:499812/1‑134 (MQ=255)
gATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTAc < 6:9327/140‑1 (MQ=255)
aTGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTTAGTTTTTTGCTCGGACGCAAAAAGTAACGAGCCGGGCAACTGGGCCGCGTC‑GGTATTTGTCTTGGGCTGCTTTTaag > 4:507977/1‑138 (MQ=255)
aTGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGTTCTTGGGCTGATTTTa < 2:367729/138‑1 (MQ=255)
cgcgcGTATTCTCACCTTCGATTAATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTTGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACt < 8:54903/137‑1 (MQ=255)
ggcgTATTCTAACCTTAGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCTGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGGCGGGCAACTGGGACGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTgg < 7:658654/137‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTgg < 8:587323/138‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGGGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGGCTTGGGCTGATTTTACTGgcg < 3:688636/140‑1 (MQ=255)
cgcgTATTCTCAACTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTgg < 8:189998/138‑1 (MQ=255)
cgcgGATTCTCCCCTTCGATTTCACCTGGCTGTCACCGTTACTTATTTTTTTCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGgcg < 6:361923/140‑1 (MQ=255)
ggTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGgcg < 7:116/137‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTg < 8:36164/138‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGa < 6:824605/140‑1 (MQ=255)
tctcACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGt < 4:696929/140‑1 (MQ=255)
ctcACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACACGGACGCAAACATTCACCCGCCAGGCAACATGGCCGCGGC‑GGGATTGGGCTTGGGGAGAATTTAAAGGGGCTGGAGtt > 4:410452/1‑140 (MQ=255)
cACGTTCGATTTTTCCTGGCTTTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGAAGCAAACAGTCACGCGACGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGtt < 8:808505/138‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAggt < 2:261570/138‑3 (MQ=255)
cACCTTCGATTGATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGa < 6:24618/140‑1 (MQ=255)
aCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGTTTTTTTTACACGGACCCAAACAGTCACGCGCCGGGCAACATGGCCGCGGCGGGTATT‑GTGATTGGCGGATTTTAATTGCGCTGGAggttat > 5:20968/1‑135 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 4:441289/140‑1 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 6:297406/140‑1 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg > 4:17971/1‑140 (MQ=255)
taTTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 2:829516/137‑1 (MQ=255)
gttttATCCTGGCTGTGACGGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCATACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTTATTTTACTGGCGCTGGAGTTGATTGTGCa < 5:24088/138‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCTGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTTATTTTACTGGCGCTGGAGTTGATTGTGCa < 6:584181/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 1:525419/138‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 6:694364/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 3:630516/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACACGGCCGCAAAAACTCACCCGCCGGGGAAATGGGCCGCGGC‑GGGATTGGTGATGGGCGGTTTTTAATGGGGCGGGGGTTGAttttt > 1:5585/1‑135 (MQ=255)
ttATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGGCACGCGCCGGGCACCTGGGGCGCGTG‑CGTATTTGTGTTTGGGTGATTTTTCTTGGGCGGGAGTTGTTTTTGGAggg > 5:399961/1‑139 (MQ=255)
tCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGCCGCAAACAGTCACGCGCCGCGCAACTGGGCCGCGGC‑GGTATTGGTGTTGGGGGGGATTTACTGGCGCTGGAGTTTATTGTGCAGGCCGt > 6:286497/1‑140 (MQ=255)
gtGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCTGACGCAACAAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTTGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTTACg < 8:145160/137‑1 (MQ=255)
tGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGGAAAAGGTCACGCGCCGGGCAACAGGGCAGGGTC‑GGAATTTGTCTTGGGCAGATTTTACGGGAGCTGGAGTATATTGTTCAGGCCGTTACGc > 2:516618/1‑138 (MQ=255)
tCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATAGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGACTGTGCAGGCCGTAACGCCg < 7:528285/138‑1 (MQ=255)
cTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTAGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAg < 7:778488/138‑1 (MQ=255)
attATTTTTATCGGCGTTATTTTTTTCCTGGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAg < 7:198721/137‑1 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCa < 7:694777/138‑1 (MQ=255)
ttttATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACg < 4:13609/140‑1 (MQ=255)
tATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGC‑GGTATTTGTGTTGGGCGGATTTTAATGGCGCTGGAGTTGATTTTGCAGGCCGTAACGCCGCTCACTCCGGCAAACgggg > 6:638908/1‑138 (MQ=255)
tATCGGCGTGATTTGTTTCCTCGGACGCAAACAGACACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCGGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACgg < 2:861749/138‑1 (MQ=255)
tCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGtt < 3:28699/140‑1 (MQ=255)
ggCGTGCTTTTTTTCCTAGGCCGCAAACAGTCACGCGCCCGGCAACAGGGCCGCGGC‑GGGATTTGGGTTGGGCGGATTTTTAATGCGCGGGAGTTGATTTTGCAGGCCGTAAACCCGATCACACAGGCAAACAGCCtt > 2:153445/1‑138 (MQ=255)
cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAgg < 5:690366/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCTGTCAACTGTGCCGCGTC‑GGTATTGGTCTTTGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGt < 4:359608/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAg < 1:437301/138‑1 (MQ=255)
aTTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTg < 8:660588/138‑1 (MQ=255)
ttttCCTCGGACGCAAACAGTCAGGCGCCGGGCATCTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCt < 2:431301/138‑1 (MQ=255)
ttttCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCt < 8:623932/138‑1 (MQ=255)
ccGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGC‑GGTATTGGTCGTGGGCTGATTTTACTGGCGCTGGAGGTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGa < 5:769808/139‑1 (MQ=255)
aaaCCGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTTGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACt < 8:487721/138‑1 (MQ=255)
gcgcCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGCTCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACAttt > 8:721152/1‑138 (MQ=255)
cgcCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACAtttt < 8:711997/138‑1 (MQ=255)
cgcCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGc < 4:516182/140‑1 (MQ=255)
cGGGCAACTGGGCCGCGTC‑TGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 6:809268/140‑1 (MQ=255)
cGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGAGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 5:3076/140‑1 (MQ=255)
cGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATGTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGCCTGGCGACATTTTGCTgg > 3:655611/1‑140 (MQ=255)
ggCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt < 6:735483/140‑1 (MQ=255)
ggCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCATTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt > 3:446228/1‑140 (MQ=255)
cAACTGGGCCGCGTC‑GGTATTGGTCATGGGCTGATTTTAATGGCGCTGGAGTTGATTGTGAAGGCCGTAACGCAGATCACTCAGGCAAACGGCGTTCAGGAGATCTTTGCCTCGCGGACTCGCGACATATTGCAGGAt > 8:456966/1‑138 (MQ=255)
cAACTGGGCCGCGTC‑GGTATTGGGCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCCCTCCGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt > 1:760958/1‑138 (MQ=255)
aaCTGGGCTGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATg < 7:517301/138‑1 (MQ=255)
aaCTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATg < 2:400218/138‑1 (MQ=255)
cTGGGCCGCGTC‑GGTATTGGTCTTGGGCAGATTTTACTGGCGCTGGAGGTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgcg < 7:812963/138‑1 (MQ=255)
ggCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTg < 2:402272/138‑1 (MQ=255)
ccGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGAGTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGATGACTGGCGACATTTTGCTGGATGCGCTGAtgg > 6:653120/1‑138 (MQ=255)
gcgTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTgg < 8:330997/112‑1 (MQ=255)
gcgTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTgg > 7:330997/1‑112 (MQ=255)
cgTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCa < 5:704735/68‑1 (MQ=255)
cgTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCa > 6:704735/1‑68 (MQ=255)
cgTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTgg < 7:257761/138‑1 (MQ=255)
cgTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg < 4:855421/140‑1 (MQ=255)
cgTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg > 4:313387/1‑140 (MQ=255)
cgTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg < 3:14668/140‑1 (MQ=255)
tC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTTTGAAGGCCGTAACTCCGATCACTCAGGCAAACGGCGTTCAGGGGATCTTTGCCTCGCTTCCTGGCGACATTTTGCTGGATGCGCTGATTggag > 1:790176/1‑136 (MQ=255)
tC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg > 2:174792/1‑138 (MQ=255)
tC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCg > 6:472908/1‑140 (MQ=255)
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CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTC‑GGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
