Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F36 I0 R1
|
107 |
8366.7 |
6299831 |
98.3% |
6192733 |
135.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,020,229 |
T→G |
15.0% |
V133G (GTC→GGC) |
yjbB → |
Na/Pi cotransporter family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,020,229 | 0 | T | G | 15.0%
| 221.3
/ 11.0
| 139 | V133G (GTC→GGC) | yjbB | Na/Pi cotransporter family protein |
| Reads supporting (aligned to +/- strand): ref base T (28/85); new base G (19/5); total (48/91) |
| Fisher's exact test for biased strand distribution p-value = 9.19e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 150 total aligned reads displayed.
CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
|
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTCTCCTGGCTGGCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 7:9155/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 5:277621/140‑1 (MQ=255)
ggTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCTGGTTGGTTTTTTTCTTGGGAAGCAAAATGTCACGCGCCGGGCACATGGGCGCCGTc > 4:682955/1‑138 (MQ=255)
ggTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTAGCCTGGCTGTCACCGTTACTTATTATTATCGGCGTGATTTTTTTAATCGGACGCAAACACTCACGCCCCGGGCAACTGTGCCGCGTCgg > 5:445096/1‑140 (MQ=255)
tGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGCTTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTAGGGAGCCAACAGTCACGCGCCGGGCCACGGGGCCGcggcgg > 1:617236/1‑138 (MQ=255)
tGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCCCCGGGCAACTGGGGCGCGTggg > 3:734903/1‑138 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGt < 1:715878/138‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGt < 3:138906/138‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTAt < 7:376320/140‑1 (MQ=255)
cAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGAATTTTTTCCTCGGAAGCAAACAGTCACCCGCCGGGCAACTGGGCCGCGTCGGtt > 4:580904/1‑137 (MQ=255)
aTGTCGGGACGGCGCTGATGGGGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCCCCTGGGCCGCGGCGGGTTTGGt > 5:552006/1‑140 (MQ=255)
aTGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTAACGCGCCGGGCAACTGGGCCGCGTCGGTAttt > 3:612379/1‑137 (MQ=255)
aTGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTTTTGGt > 7:518482/1‑140 (MQ=255)
aTGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGCCGCAAACAGTCACCCGCCGGGCAACTGGGCCGCGTCGGTAATg > 2:593678/1‑138 (MQ=255)
aTGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCTAACAGTCACGCCCCGGGGCACTGGGGCGCGGGGGTTTTggg > 7:353112/1‑139 (MQ=255)
tGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCAGGCTCTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTgg < 3:237369/138‑1 (MQ=255)
tCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGTCtt > 6:485442/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGTCtt > 2:284772/1‑138 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATCTTTATCGGCGTGATTTTTTTCCACGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGtagtgg > 5:307738/1‑135 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGGCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGC‑AACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTg < 4:625598/138‑1 (MQ=255)
gggACGGAGCTGATGGCGCGTATTCTCACCTTAGATTTATCATGGCTGTCACCGTTACTTATTTTTATCGGCGTTATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTgg < 7:185735/140‑1 (MQ=255)
ggACGGCGCTGATTGCGCGTATTCTCACCTTCTATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCTGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 8:412098/140‑1 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 6:312010/140‑1 (MQ=255)
gACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCGGCGGAGGTAGTGGtggtgg > 3:418580/1‑133 (MQ=255)
gACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTAGGCCGCAAACAGTCCCGCGCCGGGCAACAGGGCCGCGACGGTTTTGGtgatgg > 2:364454/1‑133 (MQ=255)
ggCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGTCGCAAACAGTCCCGCGCCGGGCAACTGGGCCGGGGCGGTTTTGGTCTTGGGCTgt > 8:643635/1‑139 (MQ=255)
ggCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACACTCACCCGCCCGGCAACTGGGCCCCGTGGGGATTTGTGTTGGGGTgt > 5:489247/1‑139 (MQ=255)
cTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACCGTCACGCGCCGGGCAACGGGTCCGCGTCGGTATTTGTGGTGGGcggctt > 2:755388/1‑133 (MQ=255)
aTGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTa < 4:343337/138‑1 (MQ=255)
aTGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACt < 6:193446/140‑1 (MQ=255)
ggCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGTTTTTTTTCCTCGGTCCCAAACAGTCACGCGCCGGGCAACAGGGCCGCGTGCGTATTTGTCTTGGGGTG‑GTTTTaag > 1:88746/1‑136 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGgcg < 5:132107/140‑1 (MQ=255)
gcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTGATTTTTATCGGCGTGATTTTTTTACTCGGACGCAACAAGTAAAGCGCCGGGCCACTGGGCCGCCGCGGGATTGGGCGTGGGGTG‑TTTTTAAAGgcgc > 6:739981/1‑140 (MQ=255)
cgTATTCT‑ACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGGTTTTTTTCCTCGGACGCCAACAGTCACCCGCCGGGCCACAGGGCCGCGGGGGGTTTGGTCTTGGGCGG‑ATTTTTCTTgcgg > 3:389863/1‑137 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCTGACTCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTg < 4:106811/138‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGa < 7:279170/140‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGATGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAAAAGTCACGCGCCGGGCAACTGTGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTg < 2:491268/138‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGtt < 4:758435/138‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGtt < 1:198360/138‑1 (MQ=255)
cACCGTAGATTTATACTGGCTCTCACCGTTACTTATTTTTATCGGATTGATTTTTTTCCTCGGAAGCAACCAGTCACGCGCCGGTCAACTGGGCCGCGTATGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGTAGtt < 1:36639/138‑1 (MQ=255)
aaCCTTCGATTTATCCTGGCTGGCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGa < 8:546445/139‑1 (MQ=255)
aaCCTTCGATTTATCCTGGCAGTCAACGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGa < 6:57690/139‑1 (MQ=255)
cGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTAACGCCCCCGGCAACAGGGCCCCGTCGGTATTGGTGTTGGGGTG‑ATTTTAATGGGGCTGGAGTTGATTTTGc > 8:277708/1‑140 (MQ=255)
cGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGAAGCAAACAGTCACGCCCCGGGCAACAGGGCCGCGTCGGTATTGGTAGTGGGCGG‑ATTTTAGAGGCGCTGGAGTTGATTGTGc > 8:424986/1‑140 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATtgtg < 3:628958/138‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATtgtg < 1:468055/138‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCa < 7:338855/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCa < 8:712712/140‑1 (MQ=255)
caTTTATCCTGTGTGTCACCGTTACATATTTTTATCGGCGTTATTTTTTTCCTCGGCCGCAAAAAGGCACGCGGCGGGGAACTGGGCCGCGTCGGTATTCGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATtgtg < 1:745672/137‑1 (MQ=255)
tATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTAGGACGCAAACAGTCACGCGCCGGGCCACAGGGCCGCGGAGGTTTTGGTCGTGGGCTG‑TTTTTACTTGCGCTGGAGTTGTTTTTTCAgggc > 8:398710/1‑138 (MQ=255)
ttCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTTATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGACGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGc < 1:150855/137‑1 (MQ=255)
ccTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTa < 7:678470/140‑1 (MQ=255)
gggCTGTCACCGTTTATTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCACCTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTa < 3:342960/137‑1 (MQ=255)
cTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACg < 4:605401/138‑1 (MQ=255)
tGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTGCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGGATTGGGCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTTCAGGCCGTAACGc > 3:476085/1‑138 (MQ=255)
gTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGcc < 1:608923/138‑1 (MQ=255)
cGTTTCTTTTTTTTTTGGGCGTGTTTTTTTTGCTCGGACGCAAACAGTCACGCGCGGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGGGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACt < 7:264909/140‑1 (MQ=255)
cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACt < 6:762566/140‑1 (MQ=255)
cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACt < 8:287835/140‑1 (MQ=255)
cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCa < 3:755964/138‑1 (MQ=255)
gTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCAc < 4:463542/138‑1 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa < 5:431249/140‑1 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCa < 3:330384/138‑1 (MQ=255)
aTTTTTAGCGGCGGTATTTTTTTCCTCGGACGCAAACAGGCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCGGGAGGTGATTGTGCCGGCCGTAACGCCGATCACTCAGGCaaa < 6:717881/140‑1 (MQ=255)
ttATCGGCGTGATTTTTTTCCTCGGACGCAAAAAGTAACGCGGCGGGCAACAGGGCCGCGGCGGTTTTGGGTGTGGGGTG‑GTTTTTATGGCGCTGGGGTTGGTTGTGGCGGCCGTAAAGCCGATCACGCGGGGAAAcc > 2:167841/1‑137 (MQ=255)
tATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACgg < 2:728017/138‑1 (MQ=255)
tATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACgg < 2:389867/138‑1 (MQ=255)
tATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 5:261926/140‑1 (MQ=255)
aTCGGCGTGTTTTTTTTGCTCGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTTTTGGTATTGTGATGTATTTTA‑GGGCGGAGGACTTGATAGTGCAGGGCCTAACCCCGATCACTAAGGAAAACGGCGt > 8:236041/1‑140 (MQ=255)
aTCGGCGTGATTTTTTTCCTCGGGCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGt > 8:358168/1‑140 (MQ=255)
gCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAg < 5:525737/140‑1 (MQ=255)
cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAgg < 5:393100/140‑1 (MQ=255)
cGTGATGTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCa < 3:272373/138‑1 (MQ=255)
tggtttttttCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTTTTGGTGTTGGGCTG‑ATTTTTATGGCGCTGGAGTTGATTGTGCAGGCCGTAAAGCCGCTCACTCAGGCAAACGGCGGTGAgg > 2:109401/4‑138 (MQ=255)
aTTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTg < 2:296844/138‑1 (MQ=255)
tttCCTCGGACGCAAACAGGCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGAGCtt < 4:566489/138‑1 (MQ=255)
gACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGc > 1:424922/1‑138 (MQ=255)
aaaCAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTgg < 7:264792/140‑1 (MQ=255)
aCAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCg < 8:143267/140‑1 (MQ=255)
acccgcCGGGCAACTGGGCCGCGGCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCGGGAGTTTATTGTGCAGGCCGTAACGCCGAGCACTCAGGCACACGGCGTTCAGGGGATCTTTGCCTCGCTGACTGGCGGCAttt > 8:557292/4‑140 (MQ=255)
aCGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACAt > 4:536781/1‑138 (MQ=255)
gcgcCTGGCAACTGGGCCGCGTCGGTATTGGTCTTGGTCTG‑ATTATCCTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCAGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGACTCGCTGACTGGCGACATTTTg < 8:725934/140‑1 (MQ=255)
gcgcCGGGCACCTGGGTCGCGTCGGTATTGGTCTTGGGCTG‑ATTATACGGGCGCTGGAGTTGATTGTTCAGGCCGTAACGCCCATCACTCAGGCAAACGGGGTTCAGGTGATCTTTGCCTCGGTGACTGGCGCCAttttt > 8:103353/1‑139 (MQ=255)
gcgcCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGCTCTTTGCCTCGCTGACTGGCGACAttt > 2:528689/1‑138 (MQ=255)
gcgcCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTg < 8:327794/140‑1 (MQ=255)
gcgcCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTg < 6:10888/140‑1 (MQ=255)
cGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCt < 1:387954/138‑1 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTTGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGGTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt < 8:305738/140‑1 (MQ=255)
aaCTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATg < 3:536782/138‑1 (MQ=255)
cTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgcg < 2:591756/138‑1 (MQ=255)
cTGGGCCGCGGCGGTATTGGTCTTGGGCTG‑ATGTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACGCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCt < 8:640408/140‑1 (MQ=255)
gggCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCt < 3:227988/138‑1 (MQ=255)
gggCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGa < 7:230683/140‑1 (MQ=255)
ggCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTg < 3:655919/138‑1 (MQ=255)
ggCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGAt < 7:281443/140‑1 (MQ=255)
ggTCGGGATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTgg < 2:21808/137‑1 (MQ=255)
cgtcgtTATTGGTATTGGGCTG‑ATTTTAAAGGCCCTGGAGTTGTTTGTGAACGCCTAAACGCACATCACTACGGCAAACGGCCGTCAGGTGATATTTGCCTCCCAGCCTGGCGAAATATTGCTGGATGCGCTGATTGGTg > 8:391556/1‑140 (MQ=255)
cgTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg < 5:593676/140‑1 (MQ=255)
tCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCg < 5:402341/140‑1 (MQ=255)
tCGGTATTGGGCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg < 3:468981/138‑1 (MQ=255)
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CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTG‑ATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
