Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,020,229 |
T→G |
11.5% |
V133G (GTC→GGC) |
yjbB → |
Na/Pi cotransporter family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,020,229 | 0 | T | G | 11.5%
| 260.7
/ 6.6
| 167 | V133G (GTC→GGC) | yjbB | Na/Pi cotransporter family protein |
| Reads supporting (aligned to +/- strand): ref base T (46/98); new base G (19/4); total (65/102) |
| Fisher's exact test for biased strand distribution p-value = 9.46e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 181 total aligned reads displayed.
CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
|
cggggTGCAGATGGCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 3:278881/138‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 4:1065444/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 4:567728/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 7:532363/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 1:46808/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTAATTTTATCGGCGTGATTTTTATCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 7:906876/140‑1 (MQ=255)
gggTGCAGATGTCGGGAAGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCg < 4:436250/140‑1 (MQ=255)
ggTGCAGATGTCGGGACGGCGCTGATGGCGCGTAATCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTATTTACTCCCACCCAAACAGTCACCCGCCGGGCAACAGGGGCGCCTccg > 1:756814/1‑138 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGt < 5:914997/138‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTAt < 3:311556/140‑1 (MQ=255)
aGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGTGTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTg > 1:562736/1‑140 (MQ=255)
aGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACAGGGCCGCGTCGGTAttt > 1:504082/1‑139 (MQ=255)
aGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCAAGCGCCGGGCAACTGGGCCGCGTCGGTAttt > 4:1009695/1‑139 (MQ=255)
tGTCGTGACTGCGATGATGGCGCGTATTCTCACCTTCTATTTATCCTCGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCTGACGCAAACAGTCACGCGCCGGGCAACTGGTCCGCGTCGGTATTgg < 6:937612/138‑1 (MQ=255)
tCGGGACGGCGCTGATGGCGCGTATTCTCACATTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGTCGTGATTTTTTTACTACGAAGCCAACAGGACCGCGGCGGGGAACTGGGCCGCGGCGGATGTGGTCtt > 4:387599/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTGCTCGGACGCAAACAGTCACGCGCCGGGCAACAGGGCCGCGGCGGGATTGGTGTTgg > 7:368783/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCCAACAGTCCCGCGCCGGGCAACTGGGCCGCGTCGGTATTGGtggt > 6:460609/1‑135 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTgg > 8:104906/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCGCGGTCGCAAACAGTCACGCCCCCGGCCACTGGGCCGCGGGGGGTTTGGTGTTgg > 1:1084020/1‑140 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATGCTGGATGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCATCTGGGCCGCGTCGGTATTGGTCTTg < 5:114515/138‑1 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGTCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggt < 3:70814/140‑2 (MQ=255)
ggACGGCGATGATGGCGCGTATTCTCACCTTCTAATTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 1:375240/140‑1 (MQ=255)
ggCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCCAACAGTCACGCGCCGGGCAACAGGGCCGCGTCGGTATTAGTAATGGGCt > 6:852495/1‑138 (MQ=255)
ggCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTc < 3:838514/121‑1 (MQ=255)
ggCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTc > 4:838514/1‑121 (MQ=255)
tGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCCGGCAACAGGGCCGCGTCGGTATTGGTATTGGGGGGAttt > 6:470412/1‑138 (MQ=255)
ctGGCGCGTATTCTCACCTTCGATTTATCGTAGCTGTCACTCTTTCTTATTTTTATCGGAGTGATTTTTATCGTCGGACTCAAACAGTCACCCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACt < 2:349129/139‑1 (MQ=255)
aTGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGGTTTTTTTACTCGGACGCGAACAATCACCCGCCGGGCAACAGGGGCGCGTCGGGTATGGTGTTTGGGAGTTTTTACt > 1:719830/1‑140 (MQ=255)
aTGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCTGTATTGGTCTTGGGCTGATTTTACt < 1:816459/140‑1 (MQ=255)
aTGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACt < 8:654993/140‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTgg < 5:822612/138‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 4:789183/140‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 7:952567/140‑1 (MQ=255)
gcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTTGTATTGGGGTGATTTTTCTGgcgc > 2:501847/1‑140 (MQ=255)
cgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCt < 3:844946/140‑1 (MQ=255)
gTATTCTCTCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCATCGGACGCAAACAGTCACGCGCCGGGCAACAGGGCCGCGGCGGTATTTGTGTTTGGGGGTTTTTAATGgcgc > 6:225763/1‑138 (MQ=255)
aTTCTCTCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTg < 5:225763/138‑1 (MQ=255)
tcACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGGATTGGGGTTGGGGTGATTTTAATGGCGCTGGAGttt > 7:172455/1‑139 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCTGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGa < 3:383750/140‑1 (MQ=255)
cccTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGCCCCAAACACTCCCGCGCCCGGCAACAGGGCCGCGTCGGGATTGGTGTTGGGCAGATTTTACTGGCGCTGGAGTTGAt > 4:158655/2‑140 (MQ=255)
aCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACATTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGGGTTTAt > 1:665448/1‑140 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 3:594251/140‑1 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 3:48865/140‑1 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtg < 5:297837/138‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 4:988615/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 8:85595/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 2:305289/140‑1 (MQ=255)
gATTTATCCTGGCTGGCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGTGATGATTTTACTGGCGCTGGAGTTGATtgtg < 6:570387/138‑1 (MQ=255)
gATTTATCCTGGCTGGCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGTCTGATTTTACTGGCGCTGGAGTTGATtgtg < 6:1021672/138‑1 (MQ=255)
aTTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAg < 3:1080919/140‑1 (MQ=255)
aTCCTGGCTGGCACCGTTACTTATTTTTCTCGGCGTGATTTTTTTCCTCGGACGCAACCAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTAGTGGTCTTGGGCTGATTTTACTGGCGCTGGAGGTGATTGTGCAGGCCg < 1:858387/140‑1 (MQ=255)
ccTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCg < 6:651979/138‑1 (MQ=255)
cTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGCCGCCAACAGTCACCCGCCGGGCCACGGGGCCGCGGCGGGATTGGGCGTGGGCTGATTTTTCTGGCGCGGGAGTTGATTTTTGAGGCCgg > 6:684779/1‑137 (MQ=255)
gCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGGCGCAAACAGTCACCCGCCGGGCAACTGGGCCCCCGCGGGATTGGTCTTGGGGGGATTTTTATGGGGCTGGAGTTGATTGTGCAGGCCGTAAAGc > 3:945516/1‑140 (MQ=255)
gCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTTTTGGTCTTTGGGTGATTTTACTGGCGCTGGAGGTGATTGTGCAGGCCCTTACGc > 1:924948/1‑140 (MQ=255)
cTGTCACCGTTACTTATTTTTATCGGCGTGCTTTTTTTCCGCGGTCGCAAACACTAACGCGCCGGGCAACACGGCCGCCGCGGGTTTTGGGTTGGGGGGGATTTAATGGCGCAGGCATGGATTGTGAAGTCCCTaaaccc > 8:539954/1‑136 (MQ=255)
cACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGGCGTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGAta > 4:4904/1‑139 (MQ=255)
ttACTTATTTTTATCGGCGTGATTTTTTTACTCGGACCCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGGGGTTTTTGTCTTTGGCGGATTTTACTGGCGCTGGAGTTTTTTTTGCAAGCCCTAACACCCATCACTCa > 4:320809/1‑140 (MQ=255)
tATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaa < 4:358287/140‑1 (MQ=255)
ttttttATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa < 2:171851/139‑1 (MQ=255)
aTTTTTATCGGCGTTATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa < 7:631391/140‑1 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCATGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCa < 6:139927/138‑1 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa < 8:438493/140‑1 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa < 1:354521/140‑1 (MQ=255)
tATCGGCGTCATTTTTATCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCTTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 4:1032522/140‑1 (MQ=255)
cGTGATTTTTTTCCTCGGACGCTAACAGTCACGCGCCGGGCAACTGGGCCGCGTCTGTTTTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAgg < 1:927631/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGt < 7:725692/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGGATTGGTGTTGGGCGGATTTTACGGGCGCGGGAGTTGATTGTGCAGGCCGTAACCCCGATAACGCAGGCAAACGGCGTTCAggg > 4:850544/1‑139 (MQ=255)
gTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGt < 3:203393/140‑1 (MQ=255)
tttCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTg > 4:614373/1‑140 (MQ=255)
tttCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTg < 1:784199/140‑1 (MQ=255)
aaaCAGTCACGCGCCGTGCAACGGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGTAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACt < 5:488479/138‑1 (MQ=255)
aaaCAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTgg < 1:499517/140‑1 (MQ=255)
aaaCAGGCCCGCGGCGGGCCACTGGGCCGCGTCGGTATTGGGCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTgg < 7:884916/140‑1 (MQ=255)
cgcCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGc > 3:703314/1‑140 (MQ=255)
ccGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTg > 4:703693/1‑140 (MQ=255)
cGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 1:172802/140‑1 (MQ=255)
cGGGCAACTGGGCCGCGTCGGTAGTGGTCTGGGGCTGATTTTACTGGCGCTGGAGTTGAATGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 7:253292/140‑1 (MQ=255)
cGGGCAACTGGGCCGCGTAGGTATTGGTCTTGGGATGATTTTACTGGCGCGTGCGGTGATGGGGCCGGGCGGAACGCCGATCACTCAGGCAAACGGCGTTCAGGGGAGCTTTGCCTCGCTGACTGGCGACATTTTTCTgg < 8:808866/140‑1 (MQ=255)
ggCAACTGGGCCGCGTCTGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 6:395526/138‑1 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTGTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTAGCTGACTGGCGCCATTTTGCTGGAt > 3:717511/1‑140 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 6:610977/138‑1 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt < 8:689013/140‑1 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGAGCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt > 2:914711/1‑140 (MQ=255)
ggCAACTGGGCCGCGTCGGGATTGGTCTTGGGCTGAGTTGACTGGCGCTGGAGTTGATTTTGCAGGCCGTAACGCCGCTCACTCACGCAAACGGCGGTCAGGTGATCATTGCCTCGCTGCCTTCGGACCGTTTGCTGGAt > 2:741127/1‑140 (MQ=255)
aaCTGGGCCGCGTGTGTATTTGTATTTTGATGATTTTACTGGCGCTGTAGTTGATTGTGCAGGCCGGAACGCCGTTGACTCAGGCAATAGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgcg < 7:799947/140‑1 (MQ=255)
aaCTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgcg < 3:1083823/140‑1 (MQ=255)
aaCTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgcg < 3:235320/140‑1 (MQ=255)
aaCTGGGCCGCGGCGGTATTGGTCTTGGGCTGAGTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGGAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGAGCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgcg < 3:561159/140‑1 (MQ=255)
aaCGGGGCCGCGTAGGTATTGGTCTTTGTCTGATTTTACTGGCGCTGGAGTTGAGTGTGCAGGCCGTATCGCCGATCACTCAGGCAAACGGCGTTCTGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgag < 8:585993/140‑3 (MQ=255)
aCTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgc < 5:811690/138‑1 (MQ=255)
cTGGTCCGCGTCTGTATTGGTCTTGGGCTGATTTTTCTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACGCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGATGACTGGCGACATTTTGCTGGATGCGCt < 2:639963/140‑1 (MQ=255)
gggCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGa < 7:647532/140‑1 (MQ=255)
ggCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTg < 5:302941/138‑1 (MQ=255)
ggCCGCGTCGGTATTGGGCTTGGGCGGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGAt < 1:457331/140‑1 (MQ=255)
gcgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTg > 6:946986/1‑138 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTgg < 5:960967/138‑1 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg < 2:655182/140‑1 (MQ=255)
tCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTTTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCCTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCg > 3:1021387/1‑140 (MQ=255)
tCGGTATTGGTCTTGGGCTGATTTTACTGGCGCGGGAGTTGATTGTGCAGGCCGTAACGCCGATCACAAAGGCAAACCGCGTAAAGGTGATCTTTGCCTCGCTGCATGGCGACATTTTGCTGGAAGCGCTGATTGCTGCg > 7:511579/1‑140 (MQ=255)
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CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
