Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,020,229 |
T→G |
11.5% |
V133G (GTC→GGC) |
yjbB → |
Na/Pi cotransporter family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,020,229 | 0 | T | G | 11.5%
| 225.6
/ 5.8
| 126 | V133G (GTC→GGC) | yjbB | Na/Pi cotransporter family protein |
| Reads supporting (aligned to +/- strand): ref base T (33/76); new base G (15/2); total (48/78) |
| Fisher's exact test for biased strand distribution p-value = 7.50e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 131 total aligned reads displayed.
CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTG > NZ_CP022686/3020090‑3020366
|
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 8:196740/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 4:300188/140‑1 (MQ=255)
cTGGGAGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCGGTCACCGTTACTTATTTTTATCGGCGTGATTTTCTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 1:433042/140‑1 (MQ=255)
ggTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCATAGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCgg > 1:739527/1‑140 (MQ=255)
gTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACCCCAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGt > 4:920476/1‑140 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCTTTACTTATTTTTATCGGCGTTATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTAt < 7:412297/140‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGGCACGCGCCGGGCAACAGGGCCGCGGCGGGAt > 3:222023/1‑140 (MQ=255)
aTGTCGGGAGGGCGCTGATGGCGCGTATTATCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGAAACTGGGCCGCGTCGGTATTg < 5:247101/138‑1 (MQ=255)
ctCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGATGTCACCGTTACTGATTTTTATCGGCGTGATTTTTTTGAACGGACGCAAAAACAAACGCGCCCGGCACAAGGGCCGCGTGGGGTTTggg > 5:125569/2‑137 (MQ=255)
tCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGTTTTTTTTACGCGGACGCCAACAGTATCGCGCCGGGCGACGGGGGCGGGTCGGGATTTGtggg > 3:99664/1‑137 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGTCtt > 6:282652/1‑138 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGGCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGGGGTATTGGTCGTgg > 3:440065/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATATTTTTACTCGGGCGCAAACAATCAAGCGCCGGGCAACTGGGCCGCGGCGGGATTGGTCGTgg > 3:128140/1‑140 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 3:675271/140‑1 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 3:898685/140‑1 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACAGTTACTTATTTTTATCGGCGTGATTTTTTTCCGCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 4:77294/140‑1 (MQ=255)
gACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGGATTGGTCTTgg > 6:859949/1‑138 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCCACTGGGCCGCGGCGGGATTGGTCGTGGGGTGAtt > 3:293866/1‑140 (MQ=255)
aTGGCGCGTATTCTCACCTTAGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCCCGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTa < 5:215571/138‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 1:643450/140‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 4:562774/140‑1 (MQ=255)
gcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGGCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGGATTGGTGGTGGGCGGATTTTTCTGgcgc > 2:937890/1‑140 (MQ=255)
cgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 6:96809/138‑1 (MQ=255)
cgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCAACGGGGCCGCGTCGGGATTGGTCTTGGGCTGATTTTACTGgcgcg > 8:276798/1‑139 (MQ=255)
agTATTCTCACCTTCGATTTATCCTGGCGGTAACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCt < 7:529762/139‑1 (MQ=255)
aTTCTCCCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTg < 6:91927/138‑1 (MQ=255)
aTTCTCCCCTTCGATTTATCCTGGCTGGCACAGTTACTTATTTTTATCGGCGTGATGTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGa < 8:422857/140‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGa < 4:249316/140‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGGCTTGGGCTGATTTTACTGGCGCTGGa < 1:195641/140‑1 (MQ=255)
ttCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTGTTGGGCAGAGTTTACTGGCGCTGGAg > 4:669570/1‑140 (MQ=255)
tctcACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGt < 3:460725/140‑1 (MQ=255)
ctccttccttTTATCGTGGGTTGCACCGTAATTTATTTTAAGCGGGCGGATCTTTTTGCGCGTACGCAAACAGTCCCGCGCCGGGCACCTGGGCCGTGGCGGTATCGGTCTTGGGCTGATTTTACGGGCGCTGGAGTTGa < 8:401284/138‑1 (MQ=255)
cacagtCGCTTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGAGTGATTTTTTTCCTCGGCCGAAAACAGTCACGCGCCGGTCAACTGTGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGa < 1:521124/135‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGtt < 6:867073/138‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGa < 4:347645/140‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGa < 4:445990/140‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTAATTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCAGATTTTACTGGCGCTGGAGTTGa < 1:521128/140‑1 (MQ=255)
cACCTTAGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCTTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGTGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGa < 2:28282/140‑1 (MQ=255)
aCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGTTTTTTTTCCGCGGGCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTTTTGGTGTTGGGGGGATTTTACTGGCGCTGGAGTTGAt > 7:96022/1‑140 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTAACGCGCCGGGCAACAGGGCCGCGGCCGTATTGGTCTTGGGCTGAGTTTAATGGCGCTGGAGTTGAtaatt > 4:851567/1‑136 (MQ=255)
cGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTGCTAGGGCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGGATTTGTCTTGGGGGGATTTTTATGGCGGGGGAGTTGTTtgtgg > 4:927730/1‑139 (MQ=255)
cGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTAAGCGGCCGGAAACAGTCACGCGCCGGGCAACAGGGCCGCCTCGGGATTGGTCTTGGGCTGTTTTTTCATGCGCTTGAGGTTAtttttc > 8:205808/1‑136 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 5:679311/138‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 5:100613/138‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 1:28177/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 7:177919/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 2:675893/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGGGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 4:374338/140‑1 (MQ=255)
gATTTATCCTGGCTGGCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtgtg < 5:861255/138‑1 (MQ=255)
aTTTATCCTGGCTGACACCGTTACTTATTTTTATCGGCGTGGATTTTTTGCTGGGGCACAAACAGTAACGCGCCGGGCAACATGTCCCCGGTGGTAATTTTGTTGGGCTGATTGTAATTGCGCTGCAGGTGATtgtgg > 6:254256/1‑137 (MQ=255)
tATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCCAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTTGTCTTGGGGGGATTTTACTGGGGCGGGGGTTGTTTGTGCCGGcc > 2:171961/1‑140 (MQ=255)
aTCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGc < 6:618578/138‑1 (MQ=255)
ccTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTa < 3:448071/140‑1 (MQ=255)
ggCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTaa < 6:337228/138‑1 (MQ=255)
ggCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACg < 2:358162/140‑1 (MQ=255)
gCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTGCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGGATTGGGGTTGGGCGGATTTTTCTGGCGCTGGCGTTGTTTGTGCAGGCCGTAACGc > 8:48041/1‑140 (MQ=255)
gCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCCCCGGGCAACTGGGCCGCGGCGGTATTTGTCGTGGGCGGATTTTACTGGCGCTGGAGTTGATTGTGGCGGCCGTAACGc > 8:746677/1‑140 (MQ=255)
aCCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCa < 7:871777/140‑1 (MQ=255)
cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCa < 6:613361/138‑1 (MQ=255)
cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACt < 1:697954/140‑1 (MQ=255)
ttACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACCCAAACAGTCCCGCGCCCGGCAACTGGGCCGCGGCGGGAATGGGCTTGGGCGGCTTTTACTGGCGCTCGAGTTGATTTTGCACGCCGTAACGCCCATcccaca > 4:45723/1‑135 (MQ=255)
tATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACT‑GGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCa < 6:212740/138‑1 (MQ=255)
ttttATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACg < 2:634697/140‑1 (MQ=255)
ttttATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACg < 7:321419/140‑1 (MQ=255)
ttttATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACCCGCCCGGCAACTGGGCCGCGTAGGTATTTGTGGTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCAGTAAAGCCGCTCACTCAGGCAAAcc > 3:560311/1‑139 (MQ=255)
ttttATCGGCGGGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa < 6:460772/138‑1 (MQ=255)
tATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 3:296710/140‑1 (MQ=255)
aTCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGt < 3:391856/140‑1 (MQ=255)
tCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGTGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 5:162234/138‑1 (MQ=255)
gggtaTTTTTTTCCTCGGACGAAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCa < 5:596306/134‑1 (MQ=255)
cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAgg < 4:104483/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGt < 7:475480/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGt < 1:221191/140‑1 (MQ=255)
tttCCTCTGACGCAAACAGGCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTg < 2:712033/140‑1 (MQ=255)
gACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGc > 5:695709/1‑138 (MQ=255)
ccaCAGTCACGCGCCGGGCACCTGGGCGGCGTCGGGATAGGTCTTGGGCTGAGTTGACTGGCGCGGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTTATCTTTGCCTCGCTGACt < 6:719952/136‑1 (MQ=255)
aaaCAGGCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTgg < 3:279666/140‑1 (MQ=255)
ccAGGCACGCGCCTGGCAACTGGGCCGCGTCGGTATTTGTCTTTGGCTGATTTTCCTGGCGCTGGAGGTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAATCGGCGTTCAGGTGATCTTTGCCTCGCTGACTgg < 5:278898/137‑1 (MQ=255)
cAGTCACGCGCCGGGCAAATGGGCCGCGTGGGTATTGGGCTGGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGAACCCTCAGGCAAACGGCGTTCAGGTGATCATTGCCTCGCTTACTGGc > 5:204655/1‑138 (MQ=255)
tCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCGGGAGTTGATTTTGCAGGCCGTAACGCCGATCACTCAGGCAAACGTCGTTCAGGTGATCTTTTCCTCGCTGACTGGCGACAt > 7:787040/1‑140 (MQ=255)
tCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCGGATTTTTCTGGCGCGGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGGGCAGGTGTTGGTTGCCTCGCTGACTGGCGACAt > 3:479310/1‑140 (MQ=255)
gcgcCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTg > 4:734268/1‑140 (MQ=255)
cgcCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACAtttt < 6:580038/138‑1 (MQ=255)
cgcCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTGTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACAtttt < 6:671190/138‑1 (MQ=255)
cGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg > 4:478765/1‑140 (MQ=255)
cGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 4:424663/140‑1 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGGAGATTTTACTGGCGCTGGAGGTGATTGTGCAGGCCCTAACGCCGATCACTCAGGCAAACGGCGTTCATGTGATCTTTGCCTCGCAGACTGGCTACATTTTGCTgg > 6:838042/1‑138 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGTGTTGATTGTGGAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTAAGGTGATAGTTTCGTCGCTGCATGGCGACATTTTGCTgg > 6:353176/1‑138 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt > 3:686807/1‑140 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCAGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 6:176610/138‑1 (MQ=255)
aaCTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATg < 5:794244/138‑1 (MQ=255)
aaCTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATg < 5:838042/138‑1 (MQ=255)
aaCTGGGCCGCGGCTGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGATGATTGTGCAGGCCGTAACGCCGAGCACGCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgcg < 3:336495/140‑1 (MQ=255)
ggCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTTCTGGATTCGCTGAt > 2:552378/1‑140 (MQ=255)
ggCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGAt < 4:263022/140‑1 (MQ=255)
ggCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGAt < 1:327591/140‑1 (MQ=255)
ggCCGCGTCGGTATTGGAATTGGGCTGATATTACTGGCGCTCGAGTAGATTGTTAAGGAAGTAACGCCGATCACTCAGTCAAACGGACTTCAGGTGATCTTTGCATCGCAGACTGGCGACATTTTGCTCGATGCTATGAt > 8:750064/1‑140 (MQ=255)
cgTCGGTTTTTGTCTTGGGCTTATTTTACTGTCGCTGGTGTTGATTGTGGAGGGAGTATCGCCGATCACTCAGGATATCGGCGTTCATGTGAGCTTTGCCTCGCTGACTTGAGACATTTTGCTGGATGCGCTGATTgg < 6:427519/138‑1 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTTATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTAAGTTGAGCTTTGCCTCGCTGCCTCGCCAAATTTTGCTGGATGCGCAGATTGGTg > 8:792409/1‑140 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg < 3:37748/140‑1 (MQ=255)
|
CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTG > NZ_CP022686/3020090‑3020366
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
