Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,020,229 |
T→G |
8.5% |
V133G (GTC→GGC) |
yjbB → |
Na/Pi cotransporter family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,020,229 | 0 | T | G | 8.5%
| 381.2
/ 2.7
| 202 | V133G (GTC→GGC) | yjbB | Na/Pi cotransporter family protein |
| Reads supporting (aligned to +/- strand): ref base T (55/123); new base G (19/3); total (76/126) |
| Fisher's exact test for biased strand distribution p-value = 6.62e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 219 total aligned reads displayed.
CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
|
cTGGGTGCAGATGTCGGGCAGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGt < 3:291965/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTTTCGGCGTGATTTTTTTCCTCGGACTCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGt < 6:922775/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGt < 5:973181/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGt < 4:589960/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGt < 1:219166/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGt < 4:789791/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGt < 1:689706/140‑1 (MQ=255)
acaggTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGt < 3:681810/137‑1 (MQ=255)
tGGGTGCAGATGTCGGGACGGCGCTTATGGCGCGTATTAACACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTATATAGGCGTGAGTTTTTTCCTCGGACGAAAAAAGTCACCACC‑CGCGAAACTGGGCAGCGtg > 6:660843/1‑139 (MQ=255)
ggTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGcggcgg > 3:165895/1‑140 (MQ=255)
tGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTAACGCGC‑CGGGCCAAAGGGCCGCGTCgggt > 2:463227/1‑138 (MQ=255)
gCAGATGTCGGGTCGGCGCTGATGGCTCGTATTCTCTCCTTCGTGTTATCCTGGCTGTCACCGTTACTTATTTTTATCGCCGTTATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGt < 7:364579/138‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACATTCACCCGC‑CGGGCAACTGGGCCGCGTCGGGAt > 4:230808/1‑140 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGt < 7:540777/138‑1 (MQ=255)
gCAGAGGGCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTAt < 2:146059/140‑1 (MQ=255)
tCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGGTTTTTTTTCTCGGACGCAAACACTCACGCGC‑CGGGCAACGGGGCCGCGGCGGGTTTGGTGtt > 3:760979/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGCCGCAAACAGTCACGCGC‑CGGGCCACTGGGCCGCGGCGGTATTGGTCCTgt > 4:681810/1‑139 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTgg < 5:314421/140‑1 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCTGACCCAACAAGTCAACAGC‑AGGGCCACTGGGCCGCGGCGGGTTTTGTGTTgg > 6:746068/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACATATTTTTATCGGCGTGAATTTTTTCCTCCGTCCCAAACAGTAACCCCC‑CGGGCAACACGGCCGAGTCGGGATTgttggttg > 1:839515/1‑133 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 3:1110644/140‑1 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACATTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAACCAGTCACGCGC‑AGGGCAACTGGGCCGCGGCGGTATTGGTCTTg < 8:744816/138‑1 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCAACTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 5:348983/140‑1 (MQ=255)
ggCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGTTTTTTTTCCTCGGACGCCAACAGTCACCCGC‑CGGGCCAATGGGCCGGGGCGGAATTGGGCTTggggaga > 4:856721/1‑136 (MQ=255)
ggCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGCCGCACACAGTCACGCGC‑CGGGCAACTGGGCCGGGGGGGTATTTGGATTGGGcggg > 5:1106358/1‑137 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGGCGCAAACAGTAACGCGC‑CGGGCCACTGGGCCGCGTAGGGATTGGTCGTGGGCTGAtt > 2:56380/1‑140 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCCAACAATCACGCGC‑CCGGCAACTGGGCCGCGCCGGTTTTTGTGTTTGGCTGagt > 3:328626/1‑138 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACCGTCACGCGC‑CGGGCAACGGGGCCGCGTGGGGTTTGGGGTTgggggga > 8:594902/1‑134 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGAtt > 6:282540/1‑140 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATAGGCGTGATTTTTTTAGTGGGACGCAAAAACTCCCGCGC‑CGGGCGACGGGGCCGCGGCGGGTTTTGTCTTGGGCGGAtt > 5:272702/1‑140 (MQ=255)
cTGATGGCGCGTTTTCTCACCTTGGATTTATCCTGGCTGGCACCGTTACTTATTTTTTTCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGAtttt < 6:685541/140‑1 (MQ=255)
tGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTa < 1:1156298/140‑1 (MQ=255)
ggcgTATTCTCACCTTCGATTTCTCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 1:554165/139‑1 (MQ=255)
cgcgTTGTCTCACCGTCGATTTATCCTGGCTTTCACCGTTACTTATTTTTATAGGCGTTATTTTTTTCCTCGGACGCAAACAGTCCAGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTgg < 7:721356/138‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTgg < 7:566963/138‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 4:903382/140‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 4:522163/140‑1 (MQ=255)
gcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACACGGCCGCAAACAGTCACCCGC‑CGGGCAAAGTGGGCGCGTGCGTATTGGTGATGGGCGGAGTTTAATTgcgg > 2:1094025/1‑139 (MQ=255)
gcgGATTCTCCCCGTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTAATAGGAAGCAAACAGTAACGCGC‑CGGGGAACTGGGCCGCGGCGGTTTTTGTCTTTGGGTGATTTTTCTGgcgg > 2:1106017/1‑139 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGa < 6:825550/140‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGATGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGa < 6:655919/140‑1 (MQ=255)
ttCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTAACGCGC‑CGGGCAACTGGGCCGCGGCGGGTTTGGTATTGGGGTGATTTTAGTGGCGCTgg > 7:201408/1‑138 (MQ=255)
aCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTTTTTTTTTTAATCGGACGCCAACAGTAACACGC‑CGGGCCACTGGGGCGCGTCGGTTTTTGTTTTTGGGTGTTTTTTATGGCGCggggtgtgtt > 1:1009104/1‑133 (MQ=255)
aCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGCTTTTTTTCCTCCGGCGCAAACAGTCCCGCCC‑CGGGCAACTGGGCCGCGGCGGTGTTTGTGGTGGGGGGCTTTTTATGGCGCTGGAGGTggt > 6:607649/1‑138 (MQ=255)
aCCTTCGATTTATCCTGGCTGTCACCGTTAATTATTTTTATCGGCGTGATTTTTTTACTAGGACGCCAACAATAACGCGC‑CGGGCAACTTGGCCGCGTGGGGATTGTTCTTGGGCTGATTTTAATGGGGCTGGAGTTTAt > 6:177634/1‑140 (MQ=255)
cTTCGATTTATCCTGGCTTTCACCGGTACTTATTTTTATCGGCTTGATTTTTTTACTAGGACGCAAACAGTCAACCTCGCGGGC‑ACTGGGCCCGGGCGGTCTTGGTCTTGGGGGGGATTTTCTGGCGCGGGCGGTGAt > 8:143672/1‑138 (MQ=255)
cTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTGTTGGGCTGATTTTACTGGCGCGGGAGTTGAttt > 6:141987/1‑139 (MQ=255)
cTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCGAGGGCGCAAACACTCACGCGC‑CGGGCAAATGGGCCGCGGCGGGTTTGGTAGTGGGCTGATTTTAAAGGCGCGGGAggttgt > 7:724231/1‑133 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTTTTTTTATCGGCGTTATTTTTTTCCTCGGACGCAAACAGTCTGGGGC‑CGGTCTAGTTGGCGGGGTCGGTATTGGTCTTTGGCTGATTTTACTGGCGCTTGAGTTGATtgtg < 3:1012510/140‑1 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGGCGCGTCGGGATTGGTCTTGGGCTGATTTTAATTGCGCTGGTGTTGATtgtg > 3:627746/1‑140 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtg < 7:443456/138‑1 (MQ=255)
tCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATtg < 7:877814/138‑1 (MQ=255)
cGATTTCTCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGA‑TTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 5:67824/140‑1 (MQ=255)
taTTTATCCTTGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGTCTCAAACAGTCAGGCGC‑CGTGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGTTTTTACTGGCGTTGGAGTTGATTGTGCa < 5:1006772/139‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 2:822113/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGAGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 4:957236/140‑1 (MQ=255)
ggCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACg < 3:856157/140‑1 (MQ=255)
gCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGc > 4:426476/1‑140 (MQ=255)
tCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGAt < 2:376740/140‑1 (MQ=255)
tCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGAt < 4:1134568/140‑1 (MQ=255)
cACCGTTACTTATTTTTATCGGCGTGTTTTTTTTACTAGGACGCAAAAAGTAACCCGC‑CGGGCAACAGTGCCGGGTAGGTTTTGGGCTTGGGGTGATTTTACTGGGGCGGGAGTTTAATTTGAAGGCCGTTACGCCgctg > 6:508686/1‑137 (MQ=255)
cACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGC‑CGGGCAACAGGGCCGCGTCGGGATTGGGGTTGGGCGGATTTTTATGGGGCGGGTGGTGATTTTGCAGGGCGTAAcccccaac > 5:1076703/1‑136 (MQ=255)
ccGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTGTTGGGCTGATTTTTATGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGAta > 8:231942/1‑137 (MQ=255)
cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACt < 5:518244/140‑1 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCCGACGCAAACAGTCACCCGC‑CGGGCCACGGGGCCGCGTGGGGATTGGTGGTGGGGGGAAGTTTCGGGCGCGGGAGTTGATTGTGCCGGCCGTAACGCCGGACACTCCGGccac > 2:1160756/1‑137 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTAACGCGC‑CGGGCAACAGGGCCGCGTCGGTTTTGGTATTGGGCTGATTTTAAAGGCGCAGGAGTTGATTTTTCAGGCCGTAACGCCGATCACTCatgaa > 8:832885/1‑134 (MQ=255)
tATCGGCGTGATTTTTTTCCTCGGACTCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 5:525615/140‑1 (MQ=255)
tATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 5:77075/140‑1 (MQ=255)
tCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 7:939556/138‑1 (MQ=255)
gCGTGATTTTTTTCCTCGGAAGCAAACAGTCACGCGC‑CGGGCAAATGTGCCGCGTCGGGATTGGTCATGGGCTGATTTTAAAGGCGCTGGGGTTGCTTTTGGAGGCCCTAACACCGATCACTAAGGCAAACGGCGTTCAg > 2:682731/1‑140 (MQ=255)
cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAgg < 3:968058/140‑1 (MQ=255)
cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAgg < 3:389773/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGt < 1:259631/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTAGGTTTTTGTCTTGGGGGGATTTTACAGGCGCGGGAGTTTATTTTGCAGGCCGTAAAGCCGAACACACACGCAAACCGCGGTGAgga > 6:108057/1‑139 (MQ=255)
aTTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTg < 8:1035675/138‑1 (MQ=255)
aTTTTTTTCCTCGGACGCAAACAGGCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGAt < 2:931621/140‑1 (MQ=255)
ttCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGc < 2:340694/140‑1 (MQ=255)
tCCTCGGCCGCAAACAGGCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTg < 7:152609/138‑1 (MQ=255)
tCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGGATTGGGCTGATTTTACTGGCGCTGTAGTTGATTGTGCAGGCCGTAAAGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTTcc < 1:800358/140‑1 (MQ=255)
cGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGCTCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGc > 5:592210/1‑140 (MQ=255)
ggACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACgg > 8:670237/1‑116 (MQ=255)
ggACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACgg < 7:670237/116‑1 (MQ=255)
aaaCAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACt < 8:371561/138‑1 (MQ=255)
aaaCAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTgg < 3:251737/140‑1 (MQ=255)
aCAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCg < 2:193908/140‑1 (MQ=255)
tCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCGGATGTTACTGGCGCGGGAGTGGATTGTGGAGGCCGTAACGCCGATCCCGCCGGCACACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACAt > 1:197063/1‑140 (MQ=255)
cgcgC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACAtttt < 6:901034/140‑1 (MQ=255)
cGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 5:194915/140‑1 (MQ=255)
cGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGATGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCt < 7:384696/138‑1 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt > 3:193724/1‑140 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt > 3:542108/1‑140 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt < 4:332291/140‑1 (MQ=255)
cAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTTACTGGCGACATTTTGCTGGAt > 7:626207/1‑138 (MQ=255)
aaCTGGGCCTCGTCGGTATTGTGCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATgcg < 1:1094025/140‑1 (MQ=255)
aCTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCGGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGCCTGGCGACATTTTGCTGGATgcgc > 4:178867/1‑140 (MQ=255)
tGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTg > 5:119719/1‑140 (MQ=255)
ggCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGAt < 1:621468/140‑1 (MQ=255)
ggCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGGTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGAt < 5:442647/140‑1 (MQ=255)
ggTCGGTATTGGTGGTGGGCTGATTATACTGGCGCTGGAGTAGTTTGTGCAGGCGTTACCGCAGATCACTCTGGCTATCGGGGATGAGGTGATCTTTGGGTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTgg < 7:1076785/137‑1 (MQ=255)
tCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGGGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCg > 6:956762/1‑140 (MQ=255)
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CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGC‑CGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
