Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,020,229 |
T→G |
13.8% |
V133G (GTC→GGC) |
yjbB → |
Na/Pi cotransporter family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,020,229 | 0 | T | G | 13.8%
| 278.4
/ 11.7
| 166 | V133G (GTC→GGC) | yjbB | Na/Pi cotransporter family protein |
| Reads supporting (aligned to +/- strand): ref base T (39/99); new base G (22/5); total (61/105) |
| Fisher's exact test for biased strand distribution p-value = 3.08e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 181 total aligned reads displayed.
CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
|
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 8:536704/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 6:651075/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 1:245649/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 7:465550/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 1:484078/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGt < 7:842430/140‑1 (MQ=255)
cTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGACGCGt < 1:1108292/140‑1 (MQ=255)
gggggGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTc < 5:1026477/139‑1 (MQ=255)
tGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCgg > 4:937963/1‑138 (MQ=255)
gccgaggTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGAGTTTTTTCCACGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGt < 3:571726/132‑1 (MQ=255)
gCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTAt < 6:989571/140‑1 (MQ=255)
aGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTGCTAGGGCGCAAACAGTCACGCGCCGGGCAACTGGGGCGCGTggggaatt > 1:127740/1‑135 (MQ=255)
aTGTCGTGAAGGCGCTGATGGCGCGTATTCTCACCTTCGATTAATCCTGCCTGTCACCGTTATTTATTTTTATCGGCGTGAATTTTTTCCTCGGCCGCAAACAGTCACCAGACGGGCAACAGGGCCGCGTCGGTATTggg > 8:1002930/1‑139 (MQ=255)
aTGTCGGGACGGCGCTGATGGCGCGTATTCTCCCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTggg > 6:192182/1‑139 (MQ=255)
tCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGTGtt > 2:535898/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGGTGTTTTTCCGCGGCCGCCCACAGTCACGCCCCGGGCCACTGGGGCGCGGCGGTTTTgggggtgg > 7:269071/1‑134 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTGCGCGGCCGCCAACAGTCCCGCGCCGGGCAACTTGGCCGCGGCGGGATTGGTGTTgg > 8:139569/1‑140 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTgg < 5:792146/140‑1 (MQ=255)
gggACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTAGTTTTATCGGCGTGTTTTTTTTCCTCGGCCGCAAACAGACACCCGCCCGGCACCTGGGCCGCGGGGGTGTTGGtggtgg > 7:269073/1‑135 (MQ=255)
ggACGGGGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg < 7:126041/140‑1 (MQ=255)
ggACGGCGCTGATGGCGCGTATTCTCACCTTCTATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGGGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTg < 4:619235/138‑1 (MQ=255)
gACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGCCGCAAAAAGTCACGCGCCGGGCAACTGGGCCGCGGCGGGTTTGGtggtgg > 3:304760/1‑133 (MQ=255)
ggtgcTTATGGCTAGAATTCACACCATAGATTTATCCTGGCTGTTACCGTTACTTATTTTTATCGGAGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGAGGGTATTGGTCTTGGGCTGa < 8:460195/137‑1 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGCCGCAAACAGTCACGCGCCGGGCCACTGGGCCGCGGCGGGTTTGGTGTTGGGGTgt > 3:534072/1‑137 (MQ=255)
cgcTGATGGCGCGTATTCTCACCTTCGATTTATACTGGCTGTCACCGTTACTTATTTTTATCGGCGTGTATTTATTACACGGCCGCAAAAAGTCACCCCCCGGGAAAAAGGGCCGCAGCGGTATTTGTCTTGCGCTGttt > 7:831811/1‑140 (MQ=255)
cTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCACGGACGCAAACACTCACGCGCCGGGCAACGGGGCCGCGGCGGTTATGGGCTTGGGGGGAtt > 4:278948/1‑138 (MQ=255)
gATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATTGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTAc < 1:751240/140‑1 (MQ=255)
gATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTAc < 2:219103/140‑1 (MQ=255)
gATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTAc < 5:1029267/140‑1 (MQ=255)
gATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTTTTGGTGTTTGGGTGAtttt > 3:811151/1‑138 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 5:163901/140‑1 (MQ=255)
cgcgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTCCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 6:86510/140‑1 (MQ=255)
cgcgGATTCTCACCTTCGATTTCTCCTGGATGTCACCTGTACTTATTTTTATCGGCGTGATTTTTTTCCGCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTTGTCTTGGGCTGATTTTACTGgcg < 1:1143639/140‑1 (MQ=255)
gcgTATTCTCACCTTCGATTTATCCTGGCTGGAACCGTTACTTATTTTTATCGGCGTGTTTTTTTTACTCGGACGCAAAAAGTAACGCGCCGGGCAACTGGGCCGCGTCGGGATTTGTTGTGGGCGGAATTTAATGgcgc > 5:598767/1‑140 (MQ=255)
tgTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGgcg < 3:952257/137‑1 (MQ=255)
ggTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCt < 7:384884/139‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTAGTTATTTTTATCGGCGTGATTTTTATCCTCGGACGCAAACAGTCACGCGCCGGTCAACTGGGCCGCGTCGTTATTGGTCTTGGGCTGATTTTACTGGCGCTGGa < 5:1032220/140‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTg < 3:257506/138‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTg < 4:826235/138‑1 (MQ=255)
aTTCTCACCTTCGATTTATCCTGGCTGGCACCGTTAGTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTTGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGa < 7:936717/140‑1 (MQ=255)
ttCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAg < 1:378203/140‑1 (MQ=255)
tctcACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGt < 5:983600/140‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGtt < 3:341135/138‑1 (MQ=255)
cACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGa < 8:818459/140‑1 (MQ=255)
aCCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTACTCGGGCGCAAAAAGTCACGCGCCGGGCCACTGGGGCGGGTCGGGATTGGTGTTGGGGGGATTTTACTGTCGGTGGAGTTGAt > 2:782767/1‑140 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTCTCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 5:754045/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGGAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 1:934572/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 1:624581/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 8:846277/140‑1 (MQ=255)
gATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCa < 2:1038069/140‑1 (MQ=255)
tttATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGGTTTTTTTACTCGGTCGCAAAAAGTCACGCGCCGGGCAACTGGGCCGCGGCGGTATTGGGAGTTGGGGGATTTTAATGGGGCGGGTGTTTTTtgttacgg > 8:16147/1‑135 (MQ=255)
tttATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAgg < 7:1011373/140‑1 (MQ=255)
cTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTaa < 7:322465/140‑1 (MQ=255)
tGGCTGTCACCGGTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTa < 4:732975/138‑1 (MQ=255)
ggCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGGATTGGGCTTGGGCTGATTTTAAAGGCGCTGGAGTTTCTTGTGCAGGCCGTAACg > 6:260102/1‑140 (MQ=255)
ggCTGTCACCGTTACTTATTTTTATCGGCGTGAATTTTTTACGCGGGCGCAAACAGTCACGCGCCGGGCACCTGGGCCGCGGGGGTATTGGTGTTTGGGGGATTTTAAGGGGGGGGGGGTTGATTGTGCAGGGCGTaaag > 5:242051/1‑138 (MQ=255)
tGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCg < 6:35966/140‑1 (MQ=255)
cACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGGCGGGATTGGTCTTTGGCTGATTTTACTGGGGCGGGTGGTGATTGTGCAGGCCGGTACGCCGATc > 6:510765/1‑140 (MQ=255)
cACCGTTACTTATTTTTATCGGCGTGAGTTTTTTCCTCGGACGCAAACAGTCACCCGCCGGGCCACTGGGCCGCGGCGGGTTTGGTGTTGGGCGGATTTTTATGGGGCGGGAGTGGATTTTGAAGGCCGTTAccccccaa > 6:541130/1‑136 (MQ=255)
aCCGTTACTTATTTTTATCGGCGTGATTTTTTTCCACGGAAGCAAAAATTAACCCACCCGGCAACATGGCCCCGTCGGTATTTGTAATGGGCGGAATTTAAATGCGCTTGAATTGATTTTTCAGGCCATAACGCCgcaac > 8:1023116/1‑136 (MQ=255)
cGTTACTTATTTTTATCGGCTTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACt < 7:707949/140‑1 (MQ=255)
cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCa < 4:4265/138‑1 (MQ=255)
cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACt < 2:173611/140‑1 (MQ=255)
cGTTACTTATTTTTATCGGCGGGATTTTTTTCCTCGGCCGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGGTGATTGTGCAGGCCGTAACGCCGATCa < 4:204911/138‑1 (MQ=255)
tACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTAACGCGCCGGGCAAATGGGCCGCGTCGGTATTGGTGGTGGGCTGTTTTTTCTGGCGCTGGAGTTGATTGTGCAGGCCGTTACGCCGATCAcgccg > 2:290884/1‑136 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTGCTCGGACGCAAACAGTCACGCGCCGGGCAACAGGGCCGCGTCGGGATTGGTGTTGGGCTGGTTTTACTGGCGCTGGAGTTTATTTTTCAGGCCGTAACGCCGATCACACAGGCaaa > 1:717633/1‑140 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCTGACGCAAACAGGAAAGCGCCGGGCTACTGGGCCGCGGCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa < 7:549677/140‑1 (MQ=255)
aTTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCa < 4:124894/138‑1 (MQ=255)
ttttATCGGCGGGATTTTTTTCCTCGGACGCAAACAGTCCCGCGCCGGGCAACTGGGCCTCGGCGGTATTGGTCTTGGGCTGATTTTTCTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGcccacg < 6:444668/140‑6 (MQ=255)
ttATCGGCGTGATTTTTTTACTAGGACGCAAAAAGTCACGCGCCGGGCCACTGGGCCGCGTGGGTATTGGTAGTGGGCGGATTTTTCAGGAGCGGGAGTTGATTGTGGAGGCCGTAACGCCGATCACGAAGGCaaaag > 4:674968/1‑136 (MQ=255)
tATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 7:247158/140‑1 (MQ=255)
tATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCg < 6:531604/140‑1 (MQ=255)
aTCGGCGTGATTTTTTTACTCGGGCGCAAACAGTAACGCGCCGGGCAACTGGGCCGCGGCGGTTTTGGTGTGGGGCGGATTTTACTGGCGCGGGAGTTGATTGTGCAGGCCGTTAAGCCGATCACTCAGGCAAACGGCGt > 6:441788/1‑140 (MQ=255)
tCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGtt < 8:921365/140‑1 (MQ=255)
tCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGtt < 8:461517/140‑1 (MQ=255)
tCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGtt < 5:324562/140‑1 (MQ=255)
acGGCGTGCTTTTTTTCCTCGGACGCAAACAGGCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTAGGGCTGATTTTCCTGGCGCTGGAGTTGATTGGGCAGGCCGGAACGCCGATCACTCAGGCAAACGGCg < 3:220974/137‑1 (MQ=255)
cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAgg < 2:979676/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAATCAGTCTCGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCAGATCACTCAGGCAAACGGCTTTCAGGt < 1:960498/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGt < 2:1137364/140‑1 (MQ=255)
gTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGt < 2:64615/140‑1 (MQ=255)
tacTCGGACGCACACCGTCCCGCGCCGGGCAACTGGGCGGCGGCGGTATGGTTGTTGGGCTGATTTTACTGGCGCTGGAGTTGTGGGTGCAGGCCGTTACGCCGATCACTCAGTCAAACGGCGGTCAGGTGATCTTTGcc < 7:122603/138‑1 (MQ=255)
tCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGcc < 6:953858/140‑1 (MQ=255)
tCGGACGCAAACTTTCACGCGCCGGGCAACTGTGCCGCGGCGGTATTGGTCTTGGGCTTATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTGCAGGTGATCTTTGCCTCg < 6:1071982/140‑1 (MQ=255)
cgcgCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACAtt < 3:123949/138‑1 (MQ=255)
cGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTgg < 5:475045/140‑1 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt > 1:10112/1‑140 (MQ=255)
ggCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGAt < 5:288267/140‑1 (MQ=255)
cTGGGCCGCGTGGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCt < 7:75126/140‑1 (MQ=255)
cTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCt > 6:419119/1‑140 (MQ=255)
tGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTg > 5:880973/1‑140 (MQ=255)
ggCCGCGTCGGTATTGGTATTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCTTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGCCTGGCGACATTTTTCTGGATtcgcgg > 4:355961/1‑136 (MQ=255)
ccGCGTCGGTATTGGTCTTGGTCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACTGCGTTCAGGTGATATTTGCCTCGCTGCCTGGCGACATTTTGCTGGATGCGCTGAt > 4:140407/1‑138 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa > 1:682825/1‑78 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCaaa < 2:682825/78‑1 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTTCTGGATGCGCTGATTGGTg > 1:335128/1‑140 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGCTTGGTg > 2:481815/1‑140 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTgg < 3:913267/138‑1 (MQ=255)
cgTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTg > 2:730551/1‑140 (MQ=255)
tCGGTATTGGTCTTGGGCAGATTTTACTGGCGCTGGAGTAGATTGTGCAGGTCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGAACGTTGCCTCGCTGCCTGGCGACAATTTGCTGGAAGCGCTGATTGGTGCg > 8:109043/1‑140 (MQ=255)
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CTGGGTGCAGATGTCGGGACGGCGCTGATGGCGCGTATTCTCACCTTCGATTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTACTGGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACTCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACTGGCGACATTTTGCTGGATGCGCTGATTGGTGCG > NZ_CP022686/3020090‑3020368
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
