Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,017,622 |
A→C |
16.6% |
K839N (AAA→AAC) |
metH → |
methionine synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,017,622 | 0 | A | C | 16.6%
| 307.1
/ 10.9
| 199 | K839N (AAA→AAC) | metH | methionine synthase |
| Reads supporting (aligned to +/- strand): ref base A (98/60); new base C (4/35); total (102/97) |
| Fisher's exact test for biased strand distribution p-value = 2.21e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 225 total aligned reads displayed.
CTAAAGAAGTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAG > NZ_CP022686/3017483‑3017760
|
cTAAAGAAGTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCaaaa > 1:1012892/1‑140 (MQ=255)
aaaGAAGTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCaaaa > 3:783229/1‑138 (MQ=255)
aagaagTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAgcg > 1:253599/1‑140 (MQ=255)
gaagTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAgcg > 3:39637/1‑138 (MQ=255)
gTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGCCGAGATGGTTAACGTGGCGAAAGAGATTGAGCGTCAGGGCTTCAGCATTCCGCTATTGATTGGCGGCGCGCCCACCTCCAAAGCGcaccc > 7:259887/1‑138 (MQ=255)
tGAATGCGTATTTGATTGGCATTTCGGGTCGTATCCCGCGGTCGGTGCACGACTTGGTTAACCGGGCCAATTTGAGGTTGCGTCCGGGCTTCACCATTCCGCTTTTTATTGGCGGCGCGACCACCCCAAAAGCGCACAcg < 6:87403/140‑1 (MQ=255)
caaTGCTGATTTTCTTGTCCTTTCGGGGCCGATCACGCCGGCGCGGGACGAGAGGGTTAACGTGGCGAAAGAGCTGGAGCGTCAGGGCGTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCacac < 4:382884/137‑1 (MQ=255)
tgatttgattGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGa > 8:5456/1‑140 (MQ=255)
tgatttgattGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGa > 1:837340/1‑140 (MQ=255)
atttgattGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCCCCTCAAACGCGCACACGGCGGTGa > 3:754449/1‑138 (MQ=255)
tttgattGGCCTTTCGGGGCTCATCACGCCGTCGCTGTAGTAGATGGTAAACGTGGCGAAAGAGATGGTGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGaaaa < 6:1043811/140‑1 (MQ=255)
ttgattGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCCCCTCAAAAGCGCACACGGCGGTGaaa > 4:633349/1‑138 (MQ=255)
ttgattGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGaaa > 3:429470/1‑138 (MQ=255)
attGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGCCCCCCTCAAAAGCGCACACGGCGGTGAACATCgc > 8:607634/1‑139 (MQ=255)
ttGGCCTTTCGGGGGTTATCAGGCCTTCGCTGGAGGTGAGGGTGAACGTGGCGAAAGAGATGTATGTTCAGGGCTTAAACATTCCGCTATTTATTGGCGGGGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 6:934081/140‑1 (MQ=255)
ttGGCCTTTCGGGGCTGATCACGCCGTCGCGGTCCGAGATGGTTAACGTGGCGAAATAGATGGAGCGTCAGGGCTTCACCATTCCGCTTTTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 2:494067/140‑1 (MQ=255)
ttGGCCTTTCGGGGCTGAGCCCGCCGGCGCTGGACGAGATGGTTAACTGGGCGAACGATTTGGCTCGGCAGGGCTTCACCATTCCGATATTGATTGGCGGCGCGACCACCTAAAAAGCGCACACGGCGGTGAAAATCGAg < 2:1050646/140‑1 (MQ=255)
ctGGCCTTGCGGGGCTGATCACGCCGTCGCTGTACGAGATGGTTAACGTGGCTAATGAGATGTAGCGTCTGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCg < 4:687866/137‑1 (MQ=255)
agggCCTTTCGGGGAGTATCACGCCTTCGCTGGACGAGATGGTAAACGTGGCCAAAGATATGGAGCGCCAGGGCTTCACCAATCCTCTATTGATTGCCGGCGCGACAACCTCAAAAGCGCACACGGCGGTGAAAATCGAg < 2:1143039/138‑1 (MQ=255)
cTTGCGGGGCTTAGCACGCCGTCGCGGGACGATTTGGTTAAGGGGCCTAAAGCGATGGAGCGTCAGGGCTTCACAATTCCGCTTTTGAGTGGCGGCGCGACCACCTCAAACGCGCCCACGGCGGTGAAAATCGAGCAGaa < 2:393244/140‑1 (MQ=255)
tttCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAAc > 7:1028014/1‑140 (MQ=255)
gCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCg > 2:858449/1‑140 (MQ=255)
taTCACGCCTGCGGTGGCCGAGTTGGTTACCGTGGCGAAAGATTTGTCGGGTCAGGGCTTCACAATTCCGCTATGTATGGGCGGCGCGACCACGTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCgg < 4:957598/137‑1 (MQ=255)
cACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGccc > 3:704662/1‑138 (MQ=255)
cACGCCGGCGCTGGACGAGATGGTTAACGGGGCGAACGAGATGGAGCGGCAGGGCTTCACCTTTCCGCAATTGATGGGCGGCGCGACCACCTCAAAAGCGAACACGGCGGTGAAAATCGCGCAGAACTACAGCGGCCCGa < 7:770476/140‑1 (MQ=255)
cggCCGTCGTTGGAGGTTATGTTAAACGTGGCGAATGTGATGGCGCGGCTGGGATGAACCATTCCGCTATTGTTGGGCGCCGCTACCACCTCAAACGCGCCCACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 8:1888/138‑1 (MQ=255)
ccGCCGTCGCTGGACGAGATGGTTACCGTGGCTAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 2:191329/139‑1 (MQ=255)
ccGCCGTCGCTGGACCCGAGGGTTACCGTGGCTAAAGAGAGGCATCGTCAGGGCTTCACCATTCCGCTATTGATCGGCGGCTCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCTAGCAGAACTACAGCGGCCCGAc < 8:449259/139‑1 (MQ=255)
ccGCCGGCGCTGGACGATTTGGTACCCGTGGAGAAAGAGATGGAGCGTCTGGGCATCACCATTCCGCTATTTATTGGCGGCGCGCCCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCg < 4:492150/137‑1 (MQ=255)
ccGCCGGCGCTGGACGAGATGTGTAACGGGGCGAAAGAGATGGCGCGTCCGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAACCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 5:909269/139‑1 (MQ=255)
ccGCCGGCGCTGGACGAGATGCTTAACTGGGCCAAAGATATGTAGCGCACGGGCTTCACCATACCGCTATTGATTGGCGGCGCTACCACCTCAAAAGCGAACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 6:694390/139‑1 (MQ=255)
aCGCCGTCGCGGGACGATATGGTTAACGTGGCGATAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc < 6:277339/140‑1 (MQ=255)
cGTCGCTGGCCGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACAACCTCAACAGCGCACACGGCGGTGAAAATCGAGCAGAACGACAGCGGCCCGACGgtg > 5:622848/1‑140 (MQ=255)
cGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACgg > 3:805836/1‑138 (MQ=255)
gTCGCTGGCCGAGATGGTTAACGGGGCGAAAGAGAGGGAGCGGCCGGGCTTCACCATTCCGATATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGgt < 4:935321/138‑1 (MQ=255)
gTCGCTGGACGAGATGGTAACCGTGGCTAAAGAGATGGCGCGGCTGGGCTTCACAATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACCCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGgtgt < 1:269926/140‑1 (MQ=255)
gTCGCTGGACGAGAGGGTTACCGTGGCGAAAGCGATGGAGCGCCAGGGCTTCACCATTCCGCTATTGATTGGGGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGgtgt < 2:1012892/140‑1 (MQ=255)
cTGGCCGACATGGTTCACGTGGCGAAAGAGCGGGCGCGTCAGGGCTTCCCCATCCCGCTATTGATTGCCGCCGCGACCACCTCAACCGCGCACACGGCGGTGAAAAGCGAGCAGAACTACAGCGGCCCGACGGTGTAtgt < 6:533183/140‑1 (MQ=255)
gACGAGATGGATAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGAGGCCCGACGGTGTATGTGCa > 5:708807/1‑140 (MQ=255)
gaTGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACg > 6:761016/1‑140 (MQ=255)
acggTGGCGAATGAGATGCCGCGTCAGTGCTTAACCTTTCCGCTATTGATTGGCGGCGCGACCACCTAAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcgcg < 6:805335/137‑1 (MQ=255)
aaCTTGGCGAAAGAGATCGAGCGTCAGGGCTTCACCATTCCGCTATTGATTAGCGTCGCGACCACCTCAAAAGCGCAAACTGCGGTCAAAATCGAGCAGAACTACAGCGGCCCGACCGTGTATGTGCAGAACCCAAcg > 4:712332/1‑138 (MQ=255)
aaCGTGGCTAAAGAGATGGAGCGGCAGGGCTTCACCATTCCGATATTGATTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATcgcg < 8:920126/140‑1 (MQ=255)
aaCGGGGCGAAATCCATTGAGCGTCAGGGATTAACCATTCCGCTATTGATTGGCGGCGCGACCACATCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACTGTGTATGTGCAGAACGCATcgcg < 2:689948/140‑1 (MQ=255)
aaCCTGCCGAAAGAGATGGACCCTCAGGGCTACACCAATCCGCTAATGATTGTCGGCGCGACCACCTCAAAAGCGCACACGGCGGAGAAAATCGAGCAGAACTACAGCGGCCCGCCGGTGTATGTGCAGAACGCATcg > 4:699217/1‑138 (MQ=255)
ttGGCGAAAGAGAGGGGGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCATAACTACAGCGGGCCGACGGTGTATGTGCAGAACGCATCGCGCAc < 8:399363/139‑1 (MQ=255)
gtgcctaaaGAGATGGAGCGTCAGGGCTCCACCATTCCGAAATTGATTGGCGGCGCCACCACCTCAACCCCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCAc < 5:948960/134‑1 (MQ=255)
gCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCg > 3:1014627/1‑88 (MQ=255)
cGAATGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCGCCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGACCTACAGCGGCCCGACGGTGTATGTGCTGAACGCATCGCGCACCGtg > 7:137187/1‑139 (MQ=255)
cGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCAccc > 3:559518/1‑137 (MQ=255)
cGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGtt > 6:204061/1‑140 (MQ=255)
caaaGAGATGGAGCGTCTGGGCTTCACCATTCCGCTCTTGATTGGCGGCGCGACCACCTCAAACGCGCCCACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTtg < 2:748362/139‑1 (MQ=255)
aaaGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATAGGCGGCGCGACAACCACAAAAGCTCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGtt > 3:365891/1‑138 (MQ=255)
aTGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGAATGTGCAGAACGCATCGCGCACCGTtggtgtggt > 5:324974/1‑140 (MQ=255)
ggAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGCCCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTtggtgtggt > 4:166092/1‑138 (MQ=255)
gTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGgcggcg < 2:908426/140‑1 (MQ=255)
tCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGgcgc > 1:709141/1‑140 (MQ=255)
tCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTAGGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGgcgc > 1:574540/1‑140 (MQ=255)
tCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACAACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGACCTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGgcgc > 7:65938/1‑140 (MQ=255)
gcAGGGCTTCACCATTCCGCTATTGAGTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGgcgc < 6:454324/139‑1 (MQ=255)
cAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACCCGGCGGTGAAAATCGCGCAGAACTACAGCGGCCAGACGGTGTATGTGCAGACCGCATCCCGCACCGTTGGTGAGGTGGCGgcgcg > 5:351611/1‑139 (MQ=255)
cgggCGTCACCATGCCGATATTGATGGGCGGCGCCACCACCCCAACTCCCCACACGGCGGGGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCgctg < 7:530345/139‑1 (MQ=255)
gccTTCCCCATTCAGCTTTTTATGGCCGGCGCGACCACCGCAAAAGCTCACACGGCGGGGTAAATCGAGCTGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTCGGTGGTGTGGCGGCgctgct < 8:279032/138‑1 (MQ=255)
tCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTcc > 7:450624/1‑140 (MQ=255)
tCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTcc > 1:181314/1‑140 (MQ=255)
gcACCATTCCGCTATTGATTGGGGGCGCGCCCACCTCAAACGCCCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTcc < 1:347090/139‑1 (MQ=255)
cACCATTACGCTATTGATTGGCGGCGCGACAACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGAAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCg > 6:269602/1‑140 (MQ=255)
aCCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTcc > 3:603155/1‑138 (MQ=255)
ttCCGCTATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGaca < 3:14347/138‑1 (MQ=255)
cGCTATTGATTGGCGGCGCGCCCCCCTAACAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAg < 7:607070/140‑1 (MQ=255)
cGCTATTGATTGGCGGCGCGACCCCCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTCTGTGCAGAACGCATCGCGCACCGTTGGTGGGGTGGCGGCGCTGCTTTCCGACACTc > 4:1062853/1‑138 (MQ=255)
cGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTtggtgtggt > 4:45383/1‑115 (MQ=255)
ttATTGATTGGCGGCGCGACCACCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAgcg < 6:419173/139‑1 (MQ=255)
ttgattgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTGCAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCga > 1:1090348/1‑140 (MQ=255)
gattgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCga > 3:619535/1‑138 (MQ=255)
gattgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCga > 3:1085399/1‑138 (MQ=255)
attgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGCCGGTGTATGTGCAGAACGCATCGCGCACAGTTGGTGTGGTGGCGGCGCTGCTTTCCGCCCCTCAGCGCgatga > 1:487844/1‑140 (MQ=255)
attgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATAGAGAAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTGTCAGACACTCAGCGCgatgt > 7:930637/1‑139 (MQ=255)
ttgGCGGCGCGCCCACCTCAAAAGCGCCCACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGGGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCgatgat < 5:509609/140‑1 (MQ=255)
tgGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGAc > 5:258938/1‑66 (MQ=255)
tcggcgCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCAGCTTTCCGACACTCAGCGCGATGATTTc > 8:431797/2‑140 (MQ=255)
gcggcgCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGAtt > 4:270186/1‑138 (MQ=255)
cggcgCGACCCCCTCAAACGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTTGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCg < 6:912706/140‑1 (MQ=255)
gcgcGACCCCCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGtt > 2:565202/1‑140 (MQ=255)
gcgcGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCg > 3:661908/1‑138 (MQ=255)
gcgcGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGtt > 7:84468/1‑140 (MQ=255)
gcgACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGtt > 3:185847/1‑138 (MQ=255)
cgACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGAGACTCAGCGCGATGATTTCGTTGCt > 1:883507/1‑140 (MQ=255)
accaccACAATCGTGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACGCAGCGCGATGATTTCGTTGCTCg < 5:1042229/140‑1 (MQ=255)
caccTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTa < 2:426370/140‑1 (MQ=255)
aaacGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 7:672269/140‑1 (MQ=255)
aaacGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 7:891900/140‑1 (MQ=255)
aaaaGCGCACCCGGCGGTGAAAATCGAGCAGACCTACAGCGGCCCGACGGTGTATGTGCAGAACGCAGCGCGCCCCGTTTGTGTGGTGGCGGCGCTGCTTTCCGACACTCATCGCGATGATTTCGTTGCTCGTACCCGCa < 8:872863/140‑1 (MQ=255)
aaaaGCGCACACGGCGTTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCATAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCg < 3:981211/138‑1 (MQ=255)
aaaaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCg < 4:1085399/138‑1 (MQ=255)
aaaaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 7:285029/140‑1 (MQ=255)
aaaaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGAGCAGAACGCATCGCGCACCGTTGGTGTGGGGGCGGCGCTGCTTTCCGATACTCAGCGCGATGATTTCGTTGCTCGTACCCg < 3:453725/138‑1 (MQ=255)
aaaaGCCCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGGGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 7:346871/140‑1 (MQ=255)
aaGCGCACACGTCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACTGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGATGCTCGTACCCGCAAg < 1:1067545/140‑1 (MQ=255)
aaGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCa < 4:969750/138‑1 (MQ=255)
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CTAAAGAAGTGAATGCTGATTTGATTGGCCTTTCGGGGCTGATCACGCCGTCGCTGGACGAGATGGTTAACGTGGCGAAAGAGATGGAGCGTCAGGGCTTCACCATTCCGCTATTGATTGGCGGCGCGACCACCTCAAAAGCGCACACGGCGGTGAAAATCGAGCAGAACTACAGCGGCCCGACGGTGTATGTGCAGAACGCATCGCGCACCGTTGGTGTGGTGGCGGCGCTGCTTTCCGACACTCAGCGCGATGATTTCGTTGCTCGTACCCGCAAG > NZ_CP022686/3017483‑3017760
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
