Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,304 |
A→C |
12.0% |
Q161P (CAG→CCG) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,304 | 0 | A | C | 12.0%
| 315.6
/ 6.0
| 181 | Q161P (CAG→CCG) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (93/56); new base C (3/24); total (96/85) |
| Fisher's exact test for biased strand distribution p-value = 8.77e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 181 total aligned reads displayed.
GCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGCTTCCACCT > NZ_CP022686/3925168‑3925441
|
gcgcTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGCGCGAATCCAGcc > 8:271062/1‑140 (MQ=255)
cTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACCCCGGTTCTGGTGCGCGGGATATTGCCGACAACCTGCGGGCGTCACTGAGTTCGATTCTTCTCTACTGGTATCCCGCCCGCCACAACGGCGAACGCTTCCAGCCGGa > 4:319153/1‑140 (MQ=255)
cTCGGCTGCACGCTGCCAGAAAAAGAGCGGCACACCGTTTCTGGGGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCg < 6:424851/138‑1 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGGAACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGaaa < 8:82834/140‑1 (MQ=255)
cgcgGCCATAAAATCAGGGGCACATCGTTTTTGGTGGGGGGTATATTGCCTAAAACCTGCGGGCGTCATTTAGTTCTATTCTTCTCTATTGGTATCAATAAAGACACAACGGCGAACGCATCCAGCCGTAAAGtgatg < 6:1031718/138‑1 (MQ=255)
cGCTGCCATAAAAAGAGGGGCAAAGCGTTTCTGGGGCGGGGGTTATTGCCGACAAAGTGGTGGCGTCACTTAGTGCTATTCTTCTCTACTGGTATCACAACAGCCACAACGGCTAACGCATCCCGCCGTAAACTGATgac < 8:249269/140‑1 (MQ=255)
cGCTGCCAGAAAAAGAGGGGCACCCCGTTTCTGGTGCGCGGTATATTGCCGACAAACTGCTGGCGGCACTTAGTTCGATTCTTCTCTACTGGTATCACAACCGCCACAACGGCGAACGCATCCAGCCGTAAACTTATcac < 4:705135/140‑1 (MQ=255)
tGCCAGAAAAAGAGGTGCAAACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTTGCGTCACTTATTTCGAGTCTTCTCTACTGGTATCACTTCCGCCACAACGGCGAACGCATCCAGCCGGAAACTGCTgacgac > 4:1007904/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 3:240263/1‑140 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGAGTCACTTAGTTCGCTTCTTCTCTAGTGGTATCACTACAGCCACAACGGCCAACGCATCCAGCGGGAAACTGATgccgac > 5:1006153/1‑138 (MQ=255)
aGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGActc > 6:592290/1‑138 (MQ=255)
tgagGGGCACCCCGTTTCTGGTGCGCGGGATATTGCCGACAAACTCCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATcggcg < 2:920967/139‑1 (MQ=255)
agagGGCCACCCCGTTTCTGGGGCGGGGGATATGGCCCACAAACGGCGGGCGCCCATTAGTGCGATTCTTCTCTACTGGAACCACAACCGCCACCACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATcgg < 6:379887/138‑1 (MQ=255)
tggggCACACCTTTTCTGGTGCGCGGTATATTGCCGACAAACTGCTGGCGTCACTAAGTTCGATTATACTCTCCGGGAAACACAACACCCACAACGCCTAACCAAGCCACCCGCAAACTTAGCACGACTCTATcggcg < 6:298297/137‑1 (MQ=255)
cggggCCCACCGTTTCTGGGGCGCGGGATATGCCCTCCAAACTGCTGGCGTCACTTAGGTCGATTCTTCTCTCCTGGTATCACTCCTGCCACACCGCCCAACGAATCCTCCCGGAAACTGATGACGACTCTATCGGCGGt < 8:406278/139‑1 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTAGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACTCATCCAGCCGGAAACTGATGACGACTCTATcggcg > 6:778607/1‑138 (MQ=255)
gggCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCCTCCAGCCGGCAACTGATGACGACTCTATCGGCGGt > 5:914942/1‑138 (MQ=255)
ggccacaCCGTTTCTGGTGCGCGGTTAATTGCCGACAAAGCGCTGGCGTCACTTTGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGt < 6:640266/135‑1 (MQ=255)
cccggTTTCGGGTGCGGGGGATATTGCCGACAAACTGGTGGCGTAACTTAGTTCGATTCTTCTCTACTGGTATCAATACCGCCACACCGGCTAACGCAGCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTcc < 2:1081160/136‑1 (MQ=255)
acCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCt > 1:716625/1‑140 (MQ=255)
acCGTTGCTGTGGCGGGGGATATTGCAGAAAAACTGCTGCCGTCAATTAGTTCCATTCTTCTATACTGGTATCAATACCGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCt < 8:515959/140‑1 (MQ=255)
acCGTATCAGGTGCGCGGGATATTGCCGACAAACTGCGGGCGTCACTTAGTTCGATTATTCTCTAATCGAAACAATACAGCCACAACGGCTAACGCATCCACCCGGAAACTGATGACTACTCAAACGGCGGTCACTTCCt > 1:1006151/1‑140 (MQ=255)
gTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATctgctg > 3:554956/1‑140 (MQ=255)
gTGCGCGGGATATTGCCGACAAACTGCTCGCGTCACTTAGTTAGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATctgctg > 7:332773/1‑140 (MQ=255)
gggggttatatTGCCGAAAAATTGCGGGCGTCATTTAGTTCTATTTTTCTCTACTGTTATCACTACAGCCAAAACGGCTAACGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 7:87184/133‑1 (MQ=255)
gcgcGGTATATTGCCTACAACCTGCGGGCGTCACTTAGTTCTATTCTTCTATACTGGTAACACTACCCCCACACCGGCGAACGCATCCCGCCGTAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 1:2090/140‑1 (MQ=255)
gcgcGGTATATAGCCTACAAACTGCTGGCGTCATTAAGTTCTATGCTTCTCAACTGGTAAAACTACAGCAACACCGGCGAACGCATCCAGCCTGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 4:209180/140‑1 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCTATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 3:755882/140‑1 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCtgctgcc > 1:311024/1‑139 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa > 3:578873/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTATACTGGTATCACTACAGCCACAACCGCGAACCCATCCAGCCGGAAACTGATGACGACTATATCGGCGGTCACTTCCTGCATCTGCTTCa > 7:5644/1‑140 (MQ=255)
gcgcGGGATATGGCCCACAAACGGCTGGCGGCCCTTAGTTCGATTCTTCTCTAGTGCTATCATTACCGCCACTCCTGCGAAGGAATCCTGCGGTAATCTTTTGACGACTCTATCGGCGGTCACTTCCTGCATCtgctgct < 8:977381/140‑2 (MQ=255)
ggcgGGATATTGCCGACAAACGGCTGGCGTCACTTAGTTCTATTCTTCTCTACTGGTATCACAACAGCCACACCGGCGAACGCATCCAGCCGCAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCAc < 3:1074748/139‑1 (MQ=255)
gcgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTTTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa > 5:12939/1‑138 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAACCTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACgg > 3:31733/1‑140 (MQ=255)
tGCCGACAAACGGCGGGCGGCAATACGTTCTATTCTTCTCTACTGGTATCACAACCCCCACAACGGCTAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGc < 8:378760/140‑1 (MQ=255)
ccGACAAACTGCTGGCGTCAATTAGTTCGATTCTTCTATACTGGTATCACTACAGCCACAACGGCGAACGCAGCCAGCCAGAAACTGCTGACGACTCGATAGGAGTTCACTACCTGCATCTGCTGCACGGCGCAAAGc > 5:1049133/1‑138 (MQ=255)
aCAAACTGCTGTCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCCTCTGCTGCACGGCGAAACGCCGTCg > 2:602957/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACCACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTcc > 1:156904/1‑139 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCAAACAGCCGGAAACTGATGACGACTCTATCTGCGCTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 7:995939/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTGCTCGACTGGGAGCACTACAGCCACCACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCGATCGGCGGTCCCTTCCTGCATCTGCTGCACGGCGAAACGCCGTCg > 7:976581/1‑140 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACACCGGCCACCGCATCCCGCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCa < 1:402652/140‑1 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATACAGCCGGAAACTGATGACGACTCTATCGGCGGTCCCTTCATGCATCTGCTGCACGGCGAAAAGCCGTCg > 5:595855/1‑138 (MQ=255)
aCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCGGCTGCACGGCGAAAAGCCGTCGCaaa > 7:225727/1‑140 (MQ=255)
ctgcggGGGTAACTTTGTTCTATTCTTCTCTAATTGTATAACAACACCCACACGGGCGAACGCAGCCAGCCGTAAACTCCTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaa < 5:153812/138‑1 (MQ=255)
cgggCCTCACTTAGTTCGATTCTTACATCCTGTTAACACACCCCCCCCACCCGCGAACGCAACCCGCCGTAAACTCAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTg < 1:644797/138‑1 (MQ=255)
gcggaaCTTAGGTCGTTGATTCACTACAGGTACAATTACAGCCACAACGGCTAACGCAGCCTCCCGGAAACTGCTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTgg < 6:147159/133‑1 (MQ=255)
gCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGa > 3:140131/1‑140 (MQ=255)
aCTTTGTTCTTTTCTTCTCTACTGGTATAACTACAGCCCCAAGGGCGACCGCATCCACCCGCAAAGTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 8:46560/140‑1 (MQ=255)
aCTTTGTTCGTTTCTTCTCTACTGGAAGCACTACACCCACACCGGCTAACGCAGCCCGCGGGAACGTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 3:307392/140‑1 (MQ=255)
aCTTAGTGCGTTTCTTCTGTATTGGTTAAACTCAAGCCACACGGGCGAAGCCAGCCTGCCGTAATGTTTCGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa < 5:107866/138‑1 (MQ=255)
cTTAGTTCGATTCTTCTCTACTGTAATCACTCCACCCACAACGCCTAACGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGc < 2:5545/140‑1 (MQ=255)
tttgTTCGATTCTTCTCTACTGGTAGCAAACCAGCCACAACGGCTAACGAAACCCGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCg < 1:25419/137‑1 (MQ=255)
ttCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGc > 4:472310/1‑140 (MQ=255)
tCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATg > 5:876829/1‑138 (MQ=255)
aTTTTTCTATACTGGGATCACTACAGCCAAAACGGCTACCGCATCCAGCCGTAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 2:120331/140‑1 (MQ=255)
aTTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat > 5:941764/1‑138 (MQ=255)
aTTCTTCTATACTGGTATCACTACACCCACAAGGCCGAACGCACCCCGCCGAAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 2:728293/140‑1 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 5:771587/1‑138 (MQ=255)
tctctcCTGGTATCACTACAGCCACAACGGCGAACTCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCATGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 2:423004/140‑1 (MQ=255)
tctcTACTGGTATCACTACAGCCACAACGGCGAACGCATCCACCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 3:1018350/140‑1 (MQ=255)
tctcTACTGGTATCACTACACCCACACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 2:375403/140‑1 (MQ=255)
tctcTACTGGTATCACAACAGCCACAAGGGCGAACGAATCCAGCCGTAAACTGTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 7:181974/140‑1 (MQ=255)
tctaTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGTAAACTGATGACGACTCTATCAGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtctc < 6:244891/138‑1 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 3:497988/1‑140 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 7:1000913/1‑140 (MQ=255)
tgttATCACTAAAGCCACAAAGCCTAACGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAACTCGCTGGTGCt < 7:814549/137‑1 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 2:342578/1‑140 (MQ=255)
tataaatACCGCCAAACCGGAGACCGCATCCCGCCGGAAACTGTTCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAATAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 3:648102/134‑1 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAGAGGCGATGCATATCTCGCTGGTGCTGTAc > 3:372522/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 5:411489/1‑138 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 2:217436/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 8:573026/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 8:672968/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 3:939936/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATAGGCGGTAACTTCCTTCATCTGCTGCACTGCGAAACTCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 3:652755/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 2:156426/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGCTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCTATGCATATCTCGCTCGTGCTGTACGcc > 2:49828/1‑140 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAATGCTGGGATAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 4:892743/1‑140 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 1:1030655/1‑140 (MQ=255)
cAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 5:925626/1‑138 (MQ=255)
cAGCCACAACGGCAAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 6:473278/1‑138 (MQ=255)
cgCCACAACGGCCACCGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGTTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 7:79665/139‑1 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 4:844287/140‑1 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAACTCGCTGGTGCTGTACGACGAaca > 4:61810/1‑140 (MQ=255)
gCCACAACGGCTAACGCAGCCACCCGGAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 8:5644/140‑1 (MQ=255)
cccaaaccGGCGAACGCATCCCGCCGTAAACGGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 3:351870/133‑1 (MQ=255)
cccACACCGCCTAACGCACCCAGCCGTAAAGTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 7:393227/139‑1 (MQ=255)
caACGGCGAACGCATCCAGCCTGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCTAAAAGCCGTCGCAAAGCTGGGAAAAGGCGACGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 1:592014/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGACCACGAGt > 7:279724/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 3:67786/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTACTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGTGAAAAGGCGATGCTTATCTCGCTGGTGCGGTACGCCGAACACGAGttt > 1:77671/1‑140 (MQ=255)
ggCTAACCCAACCAGCGGGAATCTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt < 6:301464/138‑1 (MQ=255)
ggCGAACGCATCCAGCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt < 5:93534/138‑1 (MQ=255)
cGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACg > 1:1038956/1‑140 (MQ=255)
gAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGc > 1:720010/1‑140 (MQ=255)
ccgaaTCCAGCCTGAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGCtt < 4:219848/136‑1 (MQ=255)
aCGCATCCAGCGGGAACCTGATGACGACTCTATCGGCGGTCACTTCGTGCATGTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGc < 5:604585/138‑1 (MQ=255)
aCGAATCCAGCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGCtt < 4:546170/140‑1 (MQ=255)
ccAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtctc > 6:877644/1‑99 (MQ=255)
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GCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGCTTCCACCT > NZ_CP022686/3925168‑3925441
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
