Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,304 |
A→C |
16.4% |
Q161P (CAG→CCG) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,304 | 0 | A | C | 16.4%
| 222.2
/ 11.6
| 142 | Q161P (CAG→CCG) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (77/36); new base C (4/23); total (81/61) |
| Fisher's exact test for biased strand distribution p-value = 5.10e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 143 total aligned reads displayed.
CTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGCTTCCACCT > NZ_CP022686/3925171‑3925441
|
cTCGGCTTCACGCTGCAAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAAATGCTGGCGTCAGTTAGTTCGATTCTTCTCTAATGGTATCTCTACAGACACAACTGCGAAAGCATTCAGCCGG‑a > 7:279882/1‑140 (MQ=255)
cTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑a > 6:139928/1‑140 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑aaa < 1:11405/140‑1 (MQ=255)
ggCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCCCTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAGCGCCTCCAGCCGG‑AAAc > 7:416259/1‑140 (MQ=255)
cTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAAc > 4:551562/1‑138 (MQ=255)
cACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACtgatg > 6:517574/1‑140 (MQ=255)
cACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATACAGCCGG‑AAACtgatg > 2:472922/1‑140 (MQ=255)
ggCTGCCATAAAAATAGGGGCAAACCGTTTCTGGTGCGCGGTATATTGCCTACAAACTGCTGGCGTCACTTTGTTCTATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGT‑AAACTGATgac < 2:730897/139‑1 (MQ=255)
cGCTGCCAGAAAAAGAGGGGAACACCGTTGCTGGGGGGCGGGTTATGGCCTAAAAACTGCTGGGGTAACTTAGTTCGATTAGTCTATACTGGTAACAATACCGCCACACGGGCGAACTAATCCCGCCGT‑AACCTTATgac < 8:98479/140‑1 (MQ=255)
gtGCCAGAAAAAGTGGGGCACACCGTTTCTGGTGCGCGGTATATTGCCGACAAAATGGTGGCGTCAGTTAGTTCTATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATgac < 4:1087075/137‑1 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACCACGGCGAACGCATCCAGCCGG‑AAACTGATgacgac > 5:1064671/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACACCGGCGAACGCATCCAGCCGG‑AAACTGATgacgac > 5:251717/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTGCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATgacgac > 7:648767/1‑140 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATgacgac > 3:1059713/1‑138 (MQ=255)
agagGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATcggcg > 7:25159/1‑140 (MQ=255)
gggggCACCCGTTTTCTGGGGCGGGGGATTTTGCCTACAAACGGCTGGCGTCACTTTGTTCTTTTATTCTCTCCTGTTATCACTCCCGCCACACGGGCGAACGCATCCCGCCGT‑AAACTGATGACGACTCTATCGGCGGt < 8:586480/139‑1 (MQ=255)
gggggCACACCGTTTGTGGTGCGCGTGATATTGCCGACAATCTGCTGGCGGCATTTTGTGCTATTCTTCTCTACTGGTATCACTACACCCACAAGGGCGACCGCACCCAGCGGG‑AAACTTTTGACGACTCTATCGGCGGt < 8:733688/139‑1 (MQ=255)
cggggCACACGGTTTCTGGTGCGCGGTTTTTTGCCGAAAAACTGCGGGGGTCACTTAGTTGTATTCTTCTCTACTGGTATCACTACAGCCACACCGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGt < 6:266756/139‑1 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGG‑AAACTGATGACGACTCTATcggcggg > 8:481874/1‑139 (MQ=255)
gggCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGt > 3:634824/1‑138 (MQ=255)
ggccccacCGTGTCTTGGGCGCGGTAAATTCCCTAAACACTGCGGGCTTCACTATGTTCTAATCTTCTCAACTGGAATAACTACAGCCACAACGCCCAACGAATCCCGCCGT‑AAACTGATGACGACTCTATCGGCGGTCa < 2:836912/135‑1 (MQ=255)
gCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCAAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCAcg > 7:867114/1‑139 (MQ=255)
cacaGCGTTTCTGGTGCGCGTGATATTGCCGACAACCTGCTGGGGTAACTTATTTCGATTCTTCTCTAGTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACtt < 8:257450/140‑1 (MQ=255)
ggTTTCTGGTGCGCGTTATATTCCCGACAAACTGCGGGCGTCACTTAGTTCCATTCTTCTCTACTGTTATAACTCCAGCCACAACGGCTAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGc < 8:979375/139‑1 (MQ=255)
tttCTGGTGCGCGGGATATTGCCGACAAACTGCAGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACACACACAACGGCGAACGCATCCCGCCGG‑AAACTGATAACGACTCTATCGGAGGTCACTTCCTGCAt > 2:83620/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCtgctgcc > 2:257495/1‑139 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa > 8:393234/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTAGATTCTTCTCTACTGGTATCACTACAGCCAAAACGGCGAACGCATCCCGCCGG‑AAACTGATGACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCa > 6:527750/1‑140 (MQ=255)
tGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGc > 8:342494/1‑140 (MQ=255)
tGCCGAAAAAGTGCGGGCGACACTTAGTGCGATTCTTCCATACTTGTATCACTCCACCAACACCGCCGAACCCCTCCAGCCGG‑AAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGc < 7:691036/140‑1 (MQ=255)
ggCCGACAACCTGCTGGCGCCACTTAGTTCGATTCTTCTCTACTGGTACCACTACCCCCACAACGGCTAACGCATCCAGCCGC‑AAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGc < 1:582490/139‑1 (MQ=255)
ataaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCAATACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGCCTCTATCGGCGGTCACTGCCTGCATCTGCTGCACGGGGAAAAGCCGTCg > 8:969218/3‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGCCTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 8:928002/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 2:370202/1‑140 (MQ=255)
aaaCTGCTGGCGTCACTTCGTACGATTCTGCTCTCCTGGTACCACTACAGCCACACCGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCa < 6:168648/140‑1 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 3:815690/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACAACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACTACTCTATCGGCGGTCACTTCCTGCATCTGCTGCCCGGCGAAAAGCCGTCGCa > 7:869602/1‑140 (MQ=255)
aaaCTGCGGGCGTCACTTAGTTCGATTCTTCTCAACTGGTATCACAACACCCACAACGGCCAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCa < 8:350514/140‑1 (MQ=255)
aaaCTGCGGGCGCCACTTCGTTCGATCCTTCTCTACTGGTATCACAACAGCCACACCGGCCACCGCCCCCCGCCGG‑AAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg < 4:280762/138‑1 (MQ=255)
ctgcggGCGTCACTTTGTTCGATTCTTCTCTACTGGTATCACACCAGCCACACCGGCGACCGCACCCCCCCGC‑AAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 1:5006/140‑1 (MQ=255)
ggctgGCGTCACTTAGTTCGATTCTGCTCTCCTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGc < 8:29555/139‑1 (MQ=255)
cGTCACTTTGTTCGATTCTTCTCTACTGTAATCACAACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaa < 1:170392/140‑1 (MQ=255)
aCTTAGTTCGATTCTTCTCTCCTGGTAACACTACAGCCACAACGCCGCACGCATCCCGCCCG‑CAACTGATGACGCCTCTATCCGCGGTAGCTTACTGCCTATGCTGCACTGCGAAACGGCGTCGCAAAGCTGGGAACAgg > 8:305716/1‑140 (MQ=255)
aCTTAGTTCGATTCTTCTCTACTGTTATCACTACAGCACCAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 7:255102/140‑1 (MQ=255)
tttAGTTCTATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGT‑AAACTTATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGc < 7:293555/139‑1 (MQ=255)
cTTAGCACGATGCTCCCCAACTGGTCTCACTACTCCCCCACGGCCCAACGAAACCAGCCGC‑AAACTGAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGc < 2:723281/140‑1 (MQ=255)
tgtgcGATTATTCTCTACTGGTATCACTACAGCCACACCGGCTAACGCAACCAGCCGT‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCg < 3:608921/134‑1 (MQ=255)
ttCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGCTGc > 6:246595/1‑140 (MQ=255)
ttCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTAAAGGCGGTCACTGACTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGc > 1:832447/1‑140 (MQ=255)
cGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat > 1:638801/1‑140 (MQ=255)
aTTCTTCTCTACTGGTATACCTACAGCCACACCGGGGAACGCATCCCGCCGG‑AACGTGATGACGACTCTATCGGCGGTCTCTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat < 4:209097/138‑1 (MQ=255)
ttcttcTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTACATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtc > 8:125148/1‑140 (MQ=255)
tcttctCTAGTGGTATCCAGACAGCCAAACCGGCGACCGCAAAACTACGT‑AACCTCATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtct < 5:884076/140‑1 (MQ=255)
tttatccTGTTAGCACTCCAGCCACACCGGCGAACTCATCCCGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAACGGCGATGCATATCTCGc < 8:95946/134‑1 (MQ=255)
tcttTAGTGTTAACAATACTGCCAGAAGGGCTAACGATTCCTGCGTT‑AAACTTTTCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTTCACGGCGAAAAGCCGTCGCATAGCTGGGAAAAGGCGATGCATATCTCGc < 1:1022619/140‑1 (MQ=255)
tctcaccTGGTATCAAAACCGCCACACCGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 5:502256/134‑1 (MQ=255)
tctaTACTGGTCACAATCCAGCCACAACGCCGAACGAATCCCGCCGT‑AAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtctc < 3:549801/138‑1 (MQ=255)
ctctACTGGTATCACTACAGCCACAACTGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGTCGATGCATATCTCGCt > 2:104618/1‑140 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGTCGACCGCATCCAGACGG‑ACACTGATTCCGACTCTATCGGCGTTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTTTGAAAAGGCGATGCATATCTCGCt > 2:893668/1‑140 (MQ=255)
tctAGTGGAATCACTCCAGCCACAACGGCTACCGCATCACGCCGG‑AAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 5:357142/140‑1 (MQ=255)
tctACTGGTATCAATCCAGCCACACCGGCGAACGCAGCCCGCCGG‑AACCTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 6:872494/140‑1 (MQ=255)
tcaaCTGGTACCACAACAGCCACAACGGCGAACCCATCCTGCCGT‑AACCTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 3:854665/135‑1 (MQ=255)
aCTGGAAACACTACCCCCACACCGCCTAACGCATCCAGCCGG‑AAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTg < 2:1017189/140‑1 (MQ=255)
tgttaacACTACAGCCACAACGGCCAACGCACCCAGCCGC‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGTAAAGGCGATGCATATCTCGCTGGTGCt < 5:172260/134‑1 (MQ=255)
tGGTATCACTCCACCCACAACGGCGACCGCACCCCGCCTG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGTAAAGGCGATGCATATCTCGCTGGTGCt < 5:177576/140‑1 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCCTCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCCCGGCGAAAAGCCGTCGCAAAGCTGGGAAAAAGCGATGCATATCTCGCTGGTGCTGt > 5:73426/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGCCTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 7:276850/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 2:119887/1‑140 (MQ=255)
aaTCCCTACACCCACACCGGCGCACCCAGCCAGCCGG‑AACCTGCTCACGACTCTCTCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 5:437929/139‑1 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 3:490190/1‑138 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat > 4:951121/1‑120 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat < 3:951121/120‑1 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 4:915640/1‑138 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg > 4:1083888/1‑138 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 7:425664/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 8:920819/1‑140 (MQ=255)
aCTACAGCCAAACTGGCGACAGCAACCACCCTT‑AACCTTCTGACGACTCTATCGGATGTAAATTCCTGCATATGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGATGGTGCTGTACGcc < 2:549314/140‑1 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 4:864753/1‑138 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 7:784964/1‑140 (MQ=255)
accgCCACACCGGCTAACGCAT‑CACCCGGTAAACTCATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAATGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGaa < 1:762656/137‑1 (MQ=255)
cgCCACAACGGCGAACGCATCCCGCCGT‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 2:529568/139‑1 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 5:932929/1‑140 (MQ=255)
gCCACACCGGCGAACCCATCCAGCCGT‑AAACTGTGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAac < 3:659179/138‑1 (MQ=255)
cccACACCGGCGAACCCATCCACCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAac < 3:101987/137‑1 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 4:93084/1‑138 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGACCACg > 1:283517/1‑140 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACg > 2:380669/1‑140 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTACTGCATCTGCTGCACGGCGAATAGCCGTCGCAAAGCTGGGAAAATGCTCTGCTTATCTCGCTGGTGCTGTACGCCGAgca > 4:583083/1‑138 (MQ=255)
aCGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt > 1:349836/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt > 7:787674/1‑140 (MQ=255)
ggtcGAACGCATCCAGCCGC‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTa < 2:926115/137‑1 (MQ=255)
ggCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt > 3:32350/1‑138 (MQ=255)
gCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAAc > 6:33803/1‑140 (MQ=255)
cGAACGCATCCAGCCGG‑AACCTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCTTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACg > 8:383795/1‑140 (MQ=255)
cGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACg > 8:100369/1‑140 (MQ=255)
gAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGACCACGAGTTTAACGc > 2:818990/1‑140 (MQ=255)
gAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGc > 6:948967/1‑140 (MQ=255)
aggCAGCCCGCGGG‑AAACGTATGAGGACTCTAGCGGCGGTCAGATCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGATCACGAGTTTAACGCtt < 7:531542/138‑1 (MQ=255)
cATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGCTTCCa > 5:760309/1‑140 (MQ=255)
aGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGCTTCCACCt > 3:323741/1‑138 (MQ=255)
|
CTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGG‑AAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTTAACGCTTCCACCT > NZ_CP022686/3925171‑3925441
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
