Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,928,345 |
T→G |
14.9% |
F277V (TTC→GTC) |
prpE → |
propionate‑‑CoA ligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,928,345 | 0 | T | G | 14.9%
| 327.0
/ 11.1
| 188 | F277V (TTC→GTC) | prpE | propionate‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base T (65/89); new base G (31/2); total (97/91) |
| Fisher's exact test for biased strand distribution p-value = 1.35e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 190 total aligned reads displayed.
CCAACGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCGTGTGGTGGAAAATT > NZ_CP022686/3928208‑3928479
|
ccAACGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCgtgt > 2:668710/1‑138 (MQ=255)
aaCGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGAAATGCGGTGGCGCTGGCGACCTCGATGGACACCATATTTGGCGGCAAAGCGGGCGGCGTGTTCtt > 8:426038/1‑140 (MQ=255)
ctcctGCATTCTCTACACCTCCGGCTCGACCGGCAAACCTAAACGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGTTCTTTTGTGc < 2:917084/138‑1 (MQ=255)
tGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCCAAGCGGGCGGCGTGTTCGTTTTTGGTTgggg > 7:193278/1‑139 (MQ=255)
tGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTc > 4:36741/1‑126 (MQ=255)
gCATTCTCTCCACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCgg < 3:385133/138‑1 (MQ=255)
gCATTCTCTACACCTCCGGCACGAGCTGCAAAACTATAGGTGGGCAGCGTGATGTGGGCGGATATGCGGTGGCGCTGGCGAACTCGATGGCCACCATTTTTGGCGGCATAGCGGGCGGCGTGTTCTTTTGTGCTTCGGat < 7:388744/140‑1 (MQ=255)
gCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCgg < 3:485257/138‑1 (MQ=255)
gCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGATCATTTGTGCTTCgg > 6:27942/1‑138 (MQ=255)
ttctcttctcGTCCGGGCCGAGCGGCTAACGTAAAGGGGTGCAGCGGGATGTCGGCGGATAGGCGGTGGCGCTGGCGACCTCGATGCACACCATTTTTGGCGGCTAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGata < 1:864359/138‑1 (MQ=255)
ttCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGata < 4:270115/138‑1 (MQ=255)
ttCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGata < 6:111342/138‑1 (MQ=255)
ctctCCACCTCCGGCACGACCGGCAAAACTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATc < 4:229848/138‑1 (MQ=255)
ctctACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTATTTTGTGCTTCGGATATCgg > 8:498901/1‑140 (MQ=255)
ctccacCTCCGGCACGACCGGCAAAGCTAAAGGTGTTCAGCGTGATGTCGGCGGTTATGCGGTGGCGCTTGCGACCTCGATGGACACCATTTTTGGCTGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGTATATCgg < 1:493158/135‑1 (MQ=255)
ctACCCCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCgg < 3:51212/138‑1 (MQ=255)
ctACACCTCCGGCCAGACCGGCAAACCTCAAGGGGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGGGCTTCGGATATCgg < 2:64726/138‑1 (MQ=255)
ctACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGGGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCgg < 4:605158/138‑1 (MQ=255)
ctACACCTCCGGCACGACCGGCAAACCTAAAGGTGGGCAGCGTGATGTCGGCGTATATGCGGTCGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCgg < 4:227599/138‑1 (MQ=255)
ctACACCTCCGGCACGACCGGAAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCTGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCgg < 2:521207/138‑1 (MQ=255)
ctACACCTCCGCCACGATCGGCAAACCTACAGGTGTTCAGCGGGATGTCGGCGGATATGCGGGTGCGCTGGCGAACTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCgg < 2:558717/138‑1 (MQ=255)
ctACACCTCAGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCgg < 3:593784/138‑1 (MQ=255)
tACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGCCCTCGATGGACACCATATTTGGCGGCAACGCGGGCGGCGTGTTCTTTTTTGCTTAGGATATCGGc > 4:473065/1‑138 (MQ=255)
tACACCTCCGGCACGACCCGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTATTGGCGGCAAAGCGGGCGGCGTGTTCATTTTTGCTTCGGCTATCGGCtt > 7:898346/1‑139 (MQ=255)
cTCCGGCACGACCGGCTAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATTGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGggt < 6:897757/138‑1 (MQ=255)
cTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGggt < 6:823253/138‑1 (MQ=255)
cTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGGTTCGGATTTCGGCggggg > 1:796737/1‑137 (MQ=255)
ccGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCGTCGGCTTTCGGCTGggtgg > 4:5064/1‑138 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTGTTTTGTGCTTCGGTTATCGGCTGGGTGGTAg > 7:588250/1‑140 (MQ=255)
cGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTAGCGGCAAAGCGGGCGGCGTGTTATTTTATGCTTCGGATATCGGCAGGGTTGTAg > 7:250853/1‑140 (MQ=255)
tcACGACCGGCAAAACTAAAGGGTTGCAGCGTGATGTCGGCGGATATGCTGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 6:409655/137‑1 (MQ=255)
gCACGACCGGCATACCTAAAGGTGTGGATCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACTCCATTTTTGGCGGCATAGCGGGCGGCGTGTTCTTTTGTTCTTATGATTTCGGCTGGGTGGTAg < 1:393065/138‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCTGGCGGCGTGTTCTTTTGTGCTTAGGATAGCGGCTGGGTGGTAg > 6:648841/1‑138 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 2:144305/138‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 5:163122/138‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg > 2:412274/1‑138 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTAGGGTATGGGgtgggtgggtg > 3:331051/1‑135 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCGTTTGTGCGTCGGGTATCGGGGGggtgggtg > 2:935464/1‑135 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATATTTGTCGGCATAGCGGGCGGCGTGGTATTTTGTGCTTAGGATATTGGGTGGGTGGGAg > 5:88956/1‑138 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGAGGGACAGCATTTTTGGCGGCAAAGAGGGCGGCGTGTGGGTTTGTGGGTCGGAAATCGGCGGGGGGGTAg > 2:294874/1‑138 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGGGGCGCTGGCAACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 1:635461/138‑1 (MQ=255)
gCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGGCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 2:181633/138‑1 (MQ=255)
gCAAGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAg < 3:992644/138‑1 (MQ=255)
ccGACCGGCAAACCTAAATGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 3:913398/137‑1 (MQ=255)
ccGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAggg < 2:373331/137‑1 (MQ=255)
ccGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCa < 7:783740/139‑1 (MQ=255)
aCGACCGGCAATGCTAAAGGTGTGCTGCGTGATGGAGGTGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATAGGCTGGGTGGTAGGGCa < 7:315122/140‑1 (MQ=255)
aCGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCa < 7:197763/140‑1 (MQ=255)
cGACCGGCAAACCTAAAGGTGTGCAGCGGGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCAt < 8:337055/140‑1 (MQ=255)
cGACCGGCAAACCTAAAGGGGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGAAGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGc < 4:762829/138‑1 (MQ=255)
aCCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCAGTTTTGGCGGCAAATCGGGCGGCGTGGTGTTTTGTGCATAGGATATCGGCGGGGTTGTAggggcttg > 7:736915/1‑135 (MQ=255)
cGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGAACTCGATGGACACCAGTTTTGGCGGCAAAGCGGGCGGCGTGGTATTTTGTTGTTAGGATATAGTCGGGGTGGTAGGGCaata > 2:706408/1‑135 (MQ=255)
aaaCCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGtat < 4:695541/138‑1 (MQ=255)
aaaGGGGGGCAGCGGGATGTCGGCGGATATGCGGTGGCGCGGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGtt < 3:104945/138‑1 (MQ=255)
ggTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGGGTTATTTTTTGGGTCGGATAAGGGCTGGGTGGTAAGGGATTAGTATATAGTTTaa > 1:139415/1‑137 (MQ=255)
tgtgCAGCGTGATGTCGGCGGATATGCGGGGGAGCTGGAGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTAcgc < 1:604358/138‑1 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGGTTCGGATATCGGCTGGGGGGTAGGGAATTCGTATATGGTTTACGcgccg > 8:324737/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGGGGTAGGGCATTCGTATATAGTTTACGcgccg > 8:651393/1‑140 (MQ=255)
tgCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGAGGCAAAGCGGGCGGCGTGGTATTTTTTGGTTCGGATATCGGCGGGGTGGTAGGGCATTCGGATATCGTTTACGcgccg > 7:328907/1‑140 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGCCCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTTTGGTTCGGCTATCGGCGGGGTGGGAGGTCATTTGTATATAGTTTACGcgccc > 6:230617/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGCCCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGGGCTTCGGAGATCGGCTGGGTGGTAGGTCATTCGTATATCGTTTACGcgccg > 4:86913/1‑138 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTTTTATTTTGTGGGTCGGTTATCGGCTGGGTGGTTGGGCATTAGTATATAGTTTACGcgccc > 5:381542/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGCGTCGGTAATAGGCGGGGTGGTAGGGCATTGGTATTTCGTTTAAAcgccc > 3:967874/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGGTTTGTGCTTCGGATATCGGGTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccc > 1:1011777/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGggtgg > 5:471946/1‑109 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGggtgg < 6:471946/109‑1 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccg > 2:674215/1‑138 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccc > 6:618138/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATAGGCTGGGTGGTAGGGCATTCGTATATAGTTTACGcgccc > 1:701838/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTGTTTTTTGGTTACGATATCGGCTGGGTGGGTTGGGATTGGGAAATACTTTACGcgccc > 1:99153/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTGGTTTGTGGTTGGGGTTTAGGGTGGGGGGGTTGGGAATGGTTTATAGTTTAAGcgccc > 3:685280/1‑137 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATAGTTTACGcgccg > 4:491866/1‑138 (MQ=255)
cAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGGGCTTCGGATATCGGGTGGGTGGTAGGGCATTCGTATATCGTTTACGcgccg > 6:963896/1‑138 (MQ=255)
cAGCGTGATGACGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATTTCGTCTGGGTGGTAGGGCATTCGTATATAGTTTACGcgccg > 3:617749/1‑138 (MQ=255)
aGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGCTTCGGATATCGGCTGGGTGGTTGGGGATTCGGATATCGTTTACGcgccgc > 5:490546/1‑138 (MQ=255)
cGTGATGGCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCgctg < 4:603896/138‑1 (MQ=255)
tGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCACAGCGGGCGGCGGGTTGTTGTGGTCTTGCGATATCGGCGGTGGTGTTTGGCATTGGTTTATAGTTTACCcgccgcgggg > 5:590382/1‑134 (MQ=255)
ggATGTCGGCGGAGATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCgctgct < 6:544167/137‑1 (MQ=255)
gaggTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCTTTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGctgctg < 5:29014/135‑1 (MQ=255)
aTGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGCGTCGGATATCGGCTGGGTGGTTGGGGATTCGTATATCGTTTACGCGCCGCTGCTgg > 3:806751/1‑138 (MQ=255)
aTGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGc < 4:97601/82‑1 (MQ=255)
aTGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGc > 3:97601/1‑82 (MQ=255)
aTGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTTGGTGGTAGGGCATTCGTATATAGTTTACGCGCCGCTGCAgg > 2:756721/1‑138 (MQ=255)
aTGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGGTCTTTTGTGCTTCGGTTATCGGCTGGGTGGTAGGGGATTCGTATATCGTTTACGCGCCGCTGCTgg > 1:368989/1‑138 (MQ=255)
tCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCgg < 1:756721/138‑1 (MQ=255)
tCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCGTTTGTGCTTCGGATATAGGCTGGGTGGGAGGGCATTAGGTTATAGTTTAACCCCCGCAGCTGgggg > 5:548396/1‑138 (MQ=255)
gcggATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGa < 1:225354/138‑1 (MQ=255)
atGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTGTTTTGTGCGTCGGATTTGGGCGGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCGGCTGGGGGGGATGGCgccg > 8:842434/1‑137 (MQ=255)
tGCGGGGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAACGCGGGCGGCGTGTGCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTa < 8:752311/140‑1 (MQ=255)
cGGTGGCGCGGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGACGCTGCTGGCGGGGATGGCGACTa < 6:189298/138‑1 (MQ=255)
gcgggCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCGGGGTGGTAGGGCATGCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACg < 7:193415/137‑1 (MQ=255)
gcTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACg < 7:679572/140‑1 (MQ=255)
ccTCGATGGACACCATTTTTGGCGGCAACGCGGGCTGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTCCGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGAt < 5:69635/138‑1 (MQ=255)
acCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGCTGGCGCCTATCGTTTACGAAGGATTGCCGACCAGGcc > 8:187566/1‑140 (MQ=255)
tttttGGCGGCAAAGCGGGCGGCGTGGTGTTTTGTGCGTCGGATATAGGCTGGGTGGTAGGGCATTCGTATTTCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGCCCTGGCCgg > 2:831535/1‑138 (MQ=255)
ttGGCGGCAAAGCCGGCTGAGTGTGCTTTTGTGCTTCGGAAATCGGCTGGGGGGTA‑GGCATTCGTATATCGTTTCCGCGCCGCTGCTGGCGTGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTg < 5:753273/138‑1 (MQ=255)
tGGCTGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGGGGGAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTg < 3:576733/138‑1 (MQ=255)
tGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGGGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTgcg < 7:135149/140‑1 (MQ=255)
cggcAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTTCCGACCTGGCCGGACTgcgg > 3:41851/1‑138 (MQ=255)
gtggTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCGTGGGGGGGAAAAtt > 4:630819/1‑138 (MQ=255)
|
CCAACGAAACCTCCTGCATTCTCTACACCTCCGGCACGACCGGCAAACCTAAAGGTGTGCAGCGTGATGTCGGCGGATATGCGGTGGCGCTGGCGACCTCGATGGACACCATTTTTGGCGGCAAAGCGGGCGGCGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTAGGGCATTCGTATATCGTTTACGCGCCGCTGCTGGCGGGGATGGCGACTATCGTTTACGAAGGATTGCCGACCTGGCCGGACTGCGGCGTGTGGTGGAAAATT > NZ_CP022686/3928208‑3928479
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
