Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,935,324 |
T→G |
11.7% |
N705T (AAC→ACC) |
lacZ ← |
beta‑galactosidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,935,324 | 0 | T | G | 11.7%
| 260.7
/ 5.2
| 133 | N705T (AAC→ACC) | lacZ | beta‑galactosidase |
| Reads supporting (aligned to +/- strand): ref base T (31/83); new base G (12/6); total (44/89) |
| Fisher's exact test for biased strand distribution p-value = 1.99e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 145 total aligned reads displayed.
CTCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAG > NZ_CP022686/3935185‑3935463
|
aTGCAAAACTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 4:507554/140‑1 (MQ=255)
aTGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGTGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 5:269777/140‑1 (MQ=255)
aTGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGGGGGACGCGGAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGttt < 2:356205/138‑1 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGttttgg > 3:846470/1‑137 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTTGGt > 4:514694/1‑140 (MQ=255)
cAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTCGt > 1:214148/1‑138 (MQ=255)
aaaaaTCCGTACCGCTGGTGGTCAGTAGAGGCATGGAGTTGGACGCGGAGGGGATTGTCACGCTGATGTTTTCCTCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTTACCATGCGTTCGCGTTTGGTTGc < 4:513513/140‑1 (MQ=255)
aaaaaTCCGGTCCGCTGGTGGGCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGc < 4:767227/140‑1 (MQ=255)
aaaTCCGTTCCGCTTGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 5:664286/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc > 5:95606/1‑140 (MQ=255)
aaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCa < 7:85111/138‑1 (MQ=255)
gTTCCGCTGGTTGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTGACTCGGAGGGTATCCGCCAGACTCCATTGCTGCCAGGCGCTGATGTGTCCTGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcgag < 6:343119/140‑3 (MQ=255)
gTTCCGCTGGTGGTCAGTTGCGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcg < 1:228895/138‑1 (MQ=255)
gTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcg < 1:621285/138‑1 (MQ=255)
gTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcg < 1:228901/138‑1 (MQ=255)
ttCCGCTGGTGGTCAGTTGAGGGATGGCGTCGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGCTTGGTTGAAcacaccgg > 5:470347/1‑133 (MQ=255)
cGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGGCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAcc < 6:502356/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAc < 2:134660/138‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 4:826965/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 5:548897/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 3:410898/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 4:869492/140‑1 (MQ=255)
gCTGGTGGGCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAc < 2:415516/138‑1 (MQ=255)
gggtCAGTTGCGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGc < 3:815116/139‑1 (MQ=255)
gggtCAGTTGAGGGATGGCGTGGGCCGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCAGTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGc < 4:596060/139‑1 (MQ=255)
gggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTa < 2:823431/137‑1 (MQ=255)
gggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGGCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTa < 7:266137/137‑1 (MQ=255)
ttGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCagag < 8:151911/138‑1 (MQ=255)
ttGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTGTTGTTGGACTACGCGTACCGGTAGCCCGAGtt > 6:515917/1‑140 (MQ=255)
gAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGCCCCTGCGGTCGCGTTTTGTTTCACTACGCGTACCGATATGCagagattt > 6:200537/1‑136 (MQ=255)
gAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGt < 3:457301/140‑1 (MQ=255)
gAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGATTCTGACCATGCGGTCGCGGTTGGTTTCACTGCCCGTACCGTTAGCCAAAGtt > 1:664714/1‑138 (MQ=255)
gATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTcc < 8:403630/138‑1 (MQ=255)
aTGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGGACTACGCGTTCCGGTAGCCAGAGTTGTCCg > 1:747054/1‑138 (MQ=255)
tGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGgcg < 3:460587/140‑1 (MQ=255)
gggCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGgcg < 4:603799/139‑1 (MQ=255)
ggCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGgc < 1:249103/138‑1 (MQ=255)
ggCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTATTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGgc < 7:337384/138‑1 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTTCACGAATCCTAACCTTGGCCAGAGTTGTGCGgcccg > 5:186869/1‑137 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCCTTAGCCAGAGTTTTACCgcgca > 6:270963/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTTGGTGCACAACGCGTACCGGTAGCCAGAGTTGTACGgcgcg > 3:560563/1‑139 (MQ=255)
gCGTGGGAAGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTAGGGTTCACATCGCGTACCTGTAGCCAGACGTTTCCGgcgca > 5:435508/1‑139 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGTCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGctct < 6:97261/140‑1 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGGACTACGCGGACCGTTAGCCCGCGTTGTGCGgcgcg > 7:440754/1‑137 (MQ=255)
aCGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGAACGAACCGTACAGGTAGCCATAGTTGTACGtcgcgatccc > 1:821560/1‑132 (MQ=255)
cgcgGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACAACGCGTACCGTTTGCCAGAGTTGTCCGGCGCTCTCCGGcc > 3:664986/1‑139 (MQ=255)
cgGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGCTGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCACTACGCGGAACGGTAACCAGCGTTGTGCGGCGCTCACCgggggg > 4:388315/1‑136 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCACTAAGCGTACCGTTAGACAGAGTTTTGCGGCGCTCTACGgcggcg > 4:84016/1‑140 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGc < 3:336787/112‑1 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGc > 4:336787/1‑112 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGACAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGct < 4:279375/140‑2 (MQ=255)
aGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTGTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggc < 6:306613/140‑1 (MQ=255)
ggAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggca < 8:311213/138‑1 (MQ=255)
tgtCACGCTGAGGTTTTCCTCCAGACGACATTGCTGCCAGGCGAGGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACGCGTACCGTTTGCCAGAGTTGTACGGAGCTCTCCTGCTGCggcctgtcag > 4:651380/1‑133 (MQ=255)
gggcACGCTGAGGTTTGCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGGCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcag < 6:219098/137‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 6:685136/140‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 6:65232/140‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 3:239569/140‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGGACTACGCGGGCCGGTAGCCAGAGTTTGACGGCGCGCTCCCGGTGCggcacgtcagg > 3:664673/1‑140 (MQ=255)
tCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAAGCGTACCGTTAGCCACAGTTGTCCGGCGCTCTCCGGCTGCgggagttcag > 8:294539/1‑138 (MQ=255)
cACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 7:4893/138‑1 (MQ=255)
cACGCTGAGGTTTGCCTCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggca < 5:455043/140‑1 (MQ=255)
cGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGTTTTCCCGACCCGGACCGTTAGCCAGACGTTTGCGGCGCTCCCCCGGGGCggccgttcaagccgg > 5:630162/1‑137 (MQ=255)
cGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACCCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGGAGCggcagttaatgcagt > 4:295717/1‑140 (MQ=255)
cGCAGAGGATTTCCGCCAGACGCCATTGCTGCCATGAGCAGATGTGTCCTGCTTCTGACCATGCGGTCGCGTTTAGTTTCACTACCCGTACCCATAACAACATTTGACAGGCTCTCTACAGCGGAggcctgtcaggcagt > 6:372900/1‑140 (MQ=255)
gCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCATAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcag < 2:708813/138‑1 (MQ=255)
gCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcag < 7:806108/138‑1 (MQ=255)
gCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcag < 1:605149/138‑1 (MQ=255)
gCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcag < 7:92455/138‑1 (MQ=255)
gCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGGGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGGTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcag < 7:33889/138‑1 (MQ=255)
gCTGAGGTGTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGGACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcagtt < 5:180892/140‑1 (MQ=255)
tGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 5:410083/90‑1 (MQ=255)
tGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg > 6:410083/1‑90 (MQ=255)
tGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGAACTACCCGTAACCTTATCCCGACTTGTACCGCGCGAGCCCGCTGCggcagatcacgcaggtca > 3:628937/1‑140 (MQ=255)
ggTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaatc < 6:731922/140‑1 (MQ=255)
ggTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaatc < 5:393849/140‑1 (MQ=255)
ggTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaa < 7:492583/138‑1 (MQ=255)
tttCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCCCGACGCGGACCGTTAGGCAGAGTTGTGCGGCGCGCGCCGGCGGCCGCAGTTCAGGCAGTtgaatca > 1:50824/1‑138 (MQ=255)
ttGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCTGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCgg < 7:562120/138‑1 (MQ=255)
tgctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGATTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGcc < 3:862478/140‑1 (MQ=255)
tgctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCggg < 1:793592/138‑1 (MQ=255)
tgctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCggg < 7:585126/138‑1 (MQ=255)
gctgcCAGGCGCTGATGTGGCCGTCTTCTGACCATGCGGTCGAGTGTGGCTGCACTACGCGGACCGTTAGCCTGATTTGTCCGGGGCTCTCCGGCTTAGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCTGGCCa < 6:27501/140‑1 (MQ=255)
gcgcTGATGTGTCCGGCTGCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGGTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCag < 6:325374/140‑1 (MQ=255)
gcgcGGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTTCCGTTAGCCAGTGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCCGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCag < 6:737137/140‑1 (MQ=255)
cgcTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTACGGCGCTCTCCGGCGGCGGGAGTTCAGGCAGTTCAATCAACTGCTTACCATGCGGGCCCACATCCagc > 4:642971/1‑139 (MQ=255)
cTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCaga < 1:485222/138‑1 (MQ=255)
cTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCaga < 1:325155/138‑1 (MQ=255)
aTGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGc < 2:13286/138‑1 (MQ=255)
tCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTAACGGTAGCCAGAGTTGTACGGCGCACTCCGGCTGCGGCAGTTAAGGCAGTTAAATAAACAGCGTTCCATGAGGGCCAACATCCAGAGGCACATCAc > 4:169412/1‑140 (MQ=255)
tGCGGTCGCGTTTGGTTGCACTAAGCGTACCGTTAGCCAGAGTTTTGCGGCGCTAGCCCGGGGCGGGAGTTCAGGCAGGTCAATCAACAGCTGAACTTGCGGGGCAACAAACACCGGCACTTCACCCCTTTCCAggcggg > 6:87673/1‑135 (MQ=255)
gggTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGAGGGCCAACATCCATAGGCACTTCACCGCTTGCCAGCGGcg < 8:540024/137‑2 (MQ=255)
cGGTCGCGGTTGGTTGCACTAAGCGTACCGGTAGCCAGAGTTGTCCGGCGCTCTCCGGCGGCGGCCGTTCAGGCAGTTCAATAAACTGGTTAACTTGGGGGGCAACAAACAGAGGCACTTAACCCCGTGCCAGCCGcg > 2:512450/1‑137 (MQ=255)
tCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCa < 5:714674/140‑1 (MQ=255)
gcgcgTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGc < 7:469480/137‑1 (MQ=255)
tttGGTTGCAGGACGCGTACCGTTAGCCAGAGTTGTGCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 3:636911/140‑1 (MQ=255)
tttGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATcc < 7:599248/138‑1 (MQ=255)
tttGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATcc < 2:115638/138‑1 (MQ=255)
tttGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 4:737215/140‑1 (MQ=255)
tttGGTTGCACTACGCGTACCGGTTGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCACGCAGTTGAATAAACAGCTTACCATTCGGGCCAACATCCACCGGCACTTAACCGCTTGCCAGCCGGATGCCAAcc > 2:850137/1‑138 (MQ=255)
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CTCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAG > NZ_CP022686/3935185‑3935463
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
