Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,935,324 |
T→G |
14.1% |
N705T (AAC→ACC) |
lacZ ← |
beta‑galactosidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,935,324 | 0 | T | G | 14.1%
| 311.8
/ 11.8
| 178 | N705T (AAC→ACC) | lacZ | beta‑galactosidase |
| Reads supporting (aligned to +/- strand): ref base T (37/111); new base G (22/8); total (59/119) |
| Fisher's exact test for biased strand distribution p-value = 8.61e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 188 total aligned reads displayed.
TCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAG > NZ_CP022686/3935186‑3935463
|
tCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGtt < 3:794838/140‑1 (MQ=255)
aTGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 4:707167/140‑1 (MQ=255)
aTGCAAAAATCCGTTCCGCTGGTGGGCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 1:477182/140‑1 (MQ=255)
aTGCAAAAATCCGTTCCGCAGGTGGTCAGTTGATGGATGGCGGGGGACGCGGAGGGGATGGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 4:586980/140‑1 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGCCGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTTGt > 2:504531/1‑140 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGCGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGt > 7:113533/1‑140 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGt < 3:1076300/140‑1 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCAAGGCGCTGATGTGTCCGGCTTCTGAACATGCGGTCGCGGTTGGt > 3:71270/1‑140 (MQ=255)
cAAAAATCCGTTCCGCTGGGGGTCAGTTGAGCGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTg < 8:182755/140‑1 (MQ=255)
aaaaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTGCTGACCATGCGGTCGCGTTTGGTTGc < 4:620311/140‑1 (MQ=255)
aaaaaTCCGTTCCGCTGGTGGGCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGc < 7:554483/140‑1 (MQ=255)
aaaaaTCCGTGCCGCTGGTGGTCAGTTGTGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGc < 4:468587/140‑1 (MQ=255)
aaaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCa < 3:1016540/140‑1 (MQ=255)
aaaaTCCGTTCCGCTGGTGGGCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGGGTCACGCTGAGGCTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCa < 7:329459/140‑1 (MQ=255)
aaaaTCCGTGCCGCTGGGGGTCAGTTGAGGGAGGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCa < 6:813897/140‑1 (MQ=255)
aaaaTCAGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCa < 4:1095850/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 4:738872/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 7:981661/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 6:513371/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTGTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 5:910980/140‑1 (MQ=255)
aaTCCGTTCCGCTGGTGGGCAGTTGAGGGATGGCGGGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACt < 1:462791/140‑1 (MQ=255)
aTCCGTTCCGCGGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTa < 1:137174/140‑1 (MQ=255)
cGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGCCGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGCCCATGCGGTCGCGGGTGGTTGCAAGAcgc > 7:793325/1‑140 (MQ=255)
gTTCCGCTGGTTGTCAGTTGAGGTATGGCGTGGGACGCGGCGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCGAGGCGCTGATGTGTCAGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcgcg < 3:611823/140‑1 (MQ=255)
gTTCCGCTGGTGGTCAGTTGAGGGATGGCGGGGGCCGCGGAGGTGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGGCCGGATTCTGACCAAGCGGTCGCGTTTGGTTGAACTAcgcg < 2:844437/140‑1 (MQ=255)
gTTCCGCGGGTGGGCAGTTTAGGGATCGCGTGGCACGCGGAGGGGATTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGACAGGCGCTGATGTGTCCGGCTTCTGACCAAGCGGTCGCGTTTGGTTGCACTAcgcg < 7:940028/140‑1 (MQ=255)
tCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGGTGCACttagcgga > 4:1097545/1‑133 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 1:62871/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 4:219785/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 5:871845/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 1:286766/140‑1 (MQ=255)
gCTGGTGGTCAGATGAGGGATGGCGTGGGACGCGGAGGGGAGGGTCACGCTGAGGTTTTCCGCCAGACGGCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 8:319236/140‑1 (MQ=255)
gCTGGTGGGCAGTTGAGGGAGGGCGGGGGACGCGGAGGGGAGGGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 7:80383/140‑1 (MQ=255)
tggtCAGGTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGGCGCGTTTGGTTGCACTACGCGTACCGTTAGc < 5:1014378/140‑1 (MQ=255)
aGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCagag < 6:1020052/140‑1 (MQ=255)
ggATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCg > 5:540756/1‑140 (MQ=255)
ggATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGGACCGTTAGCCAGAGTTGTccc > 3:855529/1‑139 (MQ=255)
gATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCgg < 3:955590/140‑1 (MQ=255)
tGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGGTTCACTACGCCGAACCTTAGCCACAGTTTTCCGgcg > 1:299236/1‑140 (MQ=255)
tGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTTGTTGCACAAACCGTAACGTTTTCAACAGTTGTTCGgcg > 6:230944/1‑140 (MQ=255)
tGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTAGTACGgcg > 2:708383/1‑140 (MQ=255)
tGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGAGGTGTCCGGCTTCTGACCATGCGGTCGCGGGTGGTTGCACTCCGCGTACCGTTATCCAGAGGTGGCCGgcc > 8:444257/1‑139 (MQ=255)
tGGCGTGGGAAGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAGCGTTAGCCAGAGTTGTCCGgcg < 7:866505/140‑1 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACGCGTAGCGTTAGACAGAGGTGTCCGgcgcg > 2:570696/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACGCGTACCGTTAGCCAGAGTTTTACCgcgcg > 4:295682/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACGCGTACCGGTAGCCAAAGTTGTTCCgcgcc > 7:67038/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTGACTAAACCTACCGTTAGCCACAGTTGTACGgcgcc > 1:10142/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGATTTGTACCGCGct > 8:344776/1‑140 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGGACCGGTAGCCCGAGTTGTCCGgcgcg > 8:907526/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGGACCCTTATCCAGCGTTGTACCgcgcg > 3:1005230/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGGTGGACGACGCGTACCGTTAGCCACAGTTGTCCGgcgcg > 7:172639/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTCCGCGGACCGTTAGCCAGAGTTGTCCGgcgca > 7:340609/1‑139 (MQ=255)
tGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGGACAACGCGTACCCTTAGCCACAGTTGTCCGGCGCgctc > 6:591074/1‑140 (MQ=255)
tGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTATCCAAACTTGTCCCgcgcgacc > 4:803845/1‑136 (MQ=255)
gACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCAGTGCTGCCAGGCGCTGATGTGGCCGGCTTCTGACCATGCGGTCGCGTGTGGTTAGCCAACGCGGCCCGATAGCCACAATTCTCCCGCGCGCTCCgg > 5:730606/1‑140 (MQ=255)
cgGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGGACTACGCGTACCGTTAGCCAGAGTTGTGCGGCGCGCTCCGGCTgg > 3:971648/1‑139 (MQ=255)
cgGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCAGGCTTCTGACCATGCGGGCGCGGTTGGTTGCACAACGCGGTCCGTTATCCAGAGTTGTCAGGGCCCCGCCGGCTgg > 4:240153/1‑139 (MQ=255)
cgGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGAGGTGTCCGGCTTCTGACCATGCGGTAGCGTTTTGTTTGAAGAAGCGTAACCTTAGCCCGACGTTTCCGGCCCACTCCggcggc > 8:365332/1‑140 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGGTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCg < 6:723630/140‑1 (MQ=255)
aGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACAACGCGTACCGTTAGCCAGAGTTTTACGGCGCTCTACGGCGGCggcagtta > 2:160466/1‑139 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 3:361302/140‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 3:417040/140‑1 (MQ=255)
cACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCACTACGCGGACCGTTAGCCAGAGTTGTCCGGCGCTGTCCGGCGGCgggacttgaggca > 2:595142/1‑140 (MQ=255)
cACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggca < 3:684376/140‑1 (MQ=255)
cACGCTGAGCTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACGCGTACAGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggca < 5:253091/140‑1 (MQ=255)
cGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGGTGTCCGGCGCTCTCCGGCTGCggcagttcaggcagt < 2:632690/140‑1 (MQ=255)
gCTGAGGTTTTCCGCCAGACGCCATTGCTGCAAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcagtt < 1:641378/140‑1 (MQ=255)
aGGTTTTCCGCCAGCCGCCAATGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTGGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaat < 3:923703/140‑1 (MQ=255)
aGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATTTGTCCTGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaat < 5:339799/140‑1 (MQ=255)
aGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaat < 1:133240/140‑1 (MQ=255)
aGGGTTTCAGCCAGACGCCATGTGTGCGAGGCGCTGATGTGTCCGGCTTCTGACCATGCTGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGGGGCAGTTCAGGCTGTtcaat < 2:746096/140‑1 (MQ=255)
ggTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaatc < 3:623632/140‑1 (MQ=255)
cGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTg < 2:338404/140‑1 (MQ=255)
cATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGGTGCACTAAGAGGACCCGTTGCCCGGGATGTACGGCGCTCGCCGGCGGCCGCAGGTGAGGCAGTTCAATCAACAGCATTCCTTGCgg > 6:311460/1‑140 (MQ=255)
gctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCa < 4:876241/140‑1 (MQ=255)
gctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCa < 4:823200/140‑1 (MQ=255)
gcCAGGCGCTGATGTGGCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACa < 6:256275/140‑1 (MQ=255)
ccAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTTGTTGGACTACGCGTACCCGTAGCCAGAGTTGTCCGGCGCGGTCCGGGGGCGGGCGGTGAGGGCGTTGAATCAAATGGTTTCCTTGCGGGCCcacaa > 8:718425/1‑139 (MQ=255)
gcgcTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCTTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCag < 6:972903/140‑1 (MQ=255)
gcgcTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGGACTACGCGTGCCGGTATCCAGAGTTGTACGGCGCGCTCCGGCGGCGGCCGGTAAGGGAGTTCAAAAAACAGCATAACATGCGGGGCAAccaccac > 8:370468/1‑134 (MQ=255)
cTGATGGGGCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGGCCGGCGCTCGCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAgg < 8:556852/140‑1 (MQ=255)
gATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCa < 4:415027/140‑1 (MQ=255)
gtgtCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACtt < 7:482092/140‑1 (MQ=255)
cGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCg < 3:542056/140‑1 (MQ=255)
agacagcTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCg < 1:552910/134‑1 (MQ=255)
ccATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCg < 2:119370/140‑1 (MQ=255)
ccATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCg < 8:796532/140‑1 (MQ=255)
ccATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCg < 2:434333/140‑1 (MQ=255)
aTGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGc < 7:761879/140‑1 (MQ=255)
tGCGGTCGCGTTTGGTTGCACTACGCGTTCCGGTAGCCAGAGTTTTCCGGCGCGCTCCGGCGGGGGCAGGTAAGGCCGGTAAATACAAGGCGTAACTTGCGGGGCCACAACCCCAGGCCCTTCACCCCTTTGCAGCGGcg > 4:202238/1‑139 (MQ=255)
tGCGGTCGCGTTTGGTTGCACGACGCGTACCGTTAGCCAGAGTTGTGCGGCGCGATCCGGCTGCGGCGGTTAAGGCAGTTGAATCAACTGCTTAACTTGCGGGCCAACATCCAGAGGGACGTAACCGCTTGGCAGCGGcg > 8:838243/1‑139 (MQ=255)
cGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTTCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTg < 3:286084/140‑1 (MQ=255)
cGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTg < 1:783482/140‑1 (MQ=255)
cGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTg < 6:402751/140‑1 (MQ=255)
ggTCGCGTTTGGTTGCACTACGCGTACAGTTAGCCAGAGTGTTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGATCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGc < 6:15339/140‑1 (MQ=255)
tCGCGTGTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCa < 8:653224/140‑1 (MQ=255)
tttGGTTGCACTACGCGTACCGGTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 3:1053046/140‑1 (MQ=255)
tttGGTATCACTACGAGTACCGGTAGCGAGAGGTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTGACATTGCGGGCCCACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 1:871358/140‑1 (MQ=255)
tttGGGTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCTGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 4:1043910/140‑1 (MQ=255)
tttGGGTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 5:366571/140‑1 (MQ=255)
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TCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAG > NZ_CP022686/3935186‑3935463
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
