Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,935,324 |
T→G |
9.9% |
N705T (AAC→ACC) |
lacZ ← |
beta‑galactosidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,935,324 | 0 | T | G | 9.9%
| 337.4
/ 4.7
| 173 | N705T (AAC→ACC) | lacZ | beta‑galactosidase |
| Reads supporting (aligned to +/- strand): ref base T (35/115); new base G (19/3); total (55/118) |
| Fisher's exact test for biased strand distribution p-value = 1.54e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 188 total aligned reads displayed.
CTCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAG > NZ_CP022686/3935185‑3935463
|
cTCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGCTGTGTCCGGCTGCTGACCAGGCGGTCGCGt > 5:671592/1‑140 (MQ=255)
cTCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGt < 6:955365/140‑1 (MQ=255)
gATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCTGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGACATTGCTGACAGGCGCTGATGTGTACGGCTTCTGACACTGCGGTCTCGtt > 7:840612/1‑138 (MQ=255)
aTGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGGGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGAGGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 5:821298/140‑1 (MQ=255)
aTGCAAAAATCCGTTCCGCTGGTGGTCAGGTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGGTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGttt < 8:395331/138‑1 (MQ=255)
aTGCAAAAATCCGTTCCGCTGGGGGTCAGTTGAGGGATTGCGTGGGACGCGGAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 5:125162/140‑1 (MQ=255)
aTGAAAAAATCCGTTCCGCTGGTGGTCAGTTGAGTGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGACATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 4:837104/140‑1 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGt > 6:495698/1‑140 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGt > 4:844432/1‑140 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGt > 6:773628/1‑140 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTATCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGtgttgt > 5:298546/1‑135 (MQ=255)
cAAAAATCCGTTACGCTGGTGGGCAGTTGCGGGATGGCGAGGGCCGCGGAGTGGCGTGTCACGCTGAGGTTTTCCGCCGGACGCCATTGCTGAAAGGCGCTGATGTGTCCGGCGTCTGACCATGCGGTCGCGTGTggg > 8:476090/1‑137 (MQ=255)
aaaaTCCGTTCCGCTGGGGGGCAGTAGAGGGAGGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCa < 5:339274/140‑1 (MQ=255)
ataTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 1:300607/138‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGCGTGATGGCGGGGGACGCGGAGGGGAGGGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 5:557969/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCTGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 5:969522/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 5:343607/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 1:233186/140‑1 (MQ=255)
aaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACt < 4:356691/140‑1 (MQ=255)
aTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTa < 3:985473/140‑1 (MQ=255)
cgatCCGCTGGTGGTCAGATGAGGGATGGCGTGGGACGATGAGGGGAGTGTCACGCTGAGGTTTTAAGCCAGACTCCATTGCTGCCAGTCGCTGATGTGTCCGGCTTCAGACCATGCTTTCGCGTTTGGTTGGACAAcgc > 6:64031/4‑140 (MQ=255)
cGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcgc > 6:731934/1‑140 (MQ=255)
gTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcgcg < 4:923433/140‑1 (MQ=255)
gTTCCGCTGGTGGTCAGTAGAGGGATGGCGTGGGAAGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcg < 8:519840/138‑1 (MQ=255)
gTTCCGCTGGTGGGCAGTTGAGGGATGGCGGGGGACGCGGAGGGGAGTGTCACGCTGAGGGTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAcgcg < 1:460802/140‑1 (MQ=255)
cGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTGTTCCGCCAGACGCCATTGCTGCCAGGCGCTGAGGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAcc < 3:161758/140‑1 (MQ=255)
gcgggtggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAc < 7:944949/135‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 3:77051/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 3:544349/140‑1 (MQ=255)
gCTGGGGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 3:788853/140‑1 (MQ=255)
tggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGCGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGc < 3:858293/140‑1 (MQ=255)
gggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGc < 4:78888/139‑1 (MQ=255)
gggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGc < 6:389838/139‑1 (MQ=255)
ggcAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCa < 5:204089/138‑1 (MQ=255)
gAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGACCTACGAGTACCG‑TTAGCCAGAGTTGt > 4:324568/1‑140 (MQ=255)
gAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGATGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCCCAACGCGTACCG‑ATAGCCAGAGtt > 7:643547/1‑138 (MQ=255)
ggATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACAAAGCGTTCCC‑GTAGCCAGAGTTGTccc > 6:292020/1‑139 (MQ=255)
ggATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTTGACGACGCGTACCG‑TTAGCCAGAGtttggcg > 1:65374/1‑135 (MQ=255)
gATGGCGTGGGACGCGGAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCgg < 6:164391/140‑1 (MQ=255)
tGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCAGGACGCGTACCG‑TTAGCCAGAGTTGTCCcgcg > 2:470883/1‑140 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACACGTAACG‑GTAGCCAGAGTTGTACggaccg > 4:1051339/1‑136 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCACTACGCGTACCG‑GTATCCAGAGTTTTCCGgcgca > 2:289040/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCACTACGCCTTACG‑TTAGCCAGAGTTGTACCgcgca > 4:1025263/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGGCAAACGCGGACCGATTAG‑CAGAGTTGTCCCgcgcg > 1:552626/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTTCCG‑TTAGCCAGAGTTGTCCGgcgcg > 1:10349/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAAGCGTACCG‑TTTGCCAGAGTTGTACGgcgcg > 2:816200/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTTGTTGCACTACGCGGAACG‑TTTTGCAGAGTTTTgcggcggg > 2:398721/1‑138 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCCCTACGCGGACCG‑GTAGCCAGAGTTGTCCGgcgcg > 6:907950/1‑139 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGctct < 4:245489/140‑1 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGctct < 5:1010234/140‑1 (MQ=255)
aCGCGGAGGGGATTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGc < 2:242731/140‑1 (MQ=255)
cgGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCCGCGTTGTCCGGCGCTCTCCGGCTGc > 4:659748/1‑140 (MQ=255)
ggaggggaggGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTg < 8:757313/138‑1 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCg < 1:808961/140‑1 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCg < 1:60864/140‑1 (MQ=255)
gAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGttt < 8:386603/87‑1 (MQ=255)
gAGGGGAGTGGCACGCTGAGGGGGTCCGCCAGCCGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTGGTCCGGCGCTCTCCGGCTGc < 8:882367/138‑1 (MQ=255)
aGGGGAGTGTCTCGCGGAGGTTTTCCGCCCGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGAGCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑GTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCg < 8:242644/138‑1 (MQ=255)
aGGGGAGTGTCACGCTGAGGTGTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggc < 2:308282/140‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 5:495698/140‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 3:219009/140‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttca < 8:96897/138‑1 (MQ=255)
tCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGGACCG‑TTAGCCAGATTTGTCCGGCGCACTACGGCTGCggcaggtcaggc > 6:225077/1‑140 (MQ=255)
cACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCACTACGCGTACCG‑GTAGGCAGAGTTTGCCGGCGCTCTCCCGCGGCggcagttcaggcc > 2:1100128/1‑139 (MQ=255)
gCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcag < 7:21838/138‑1 (MQ=255)
gCTGAGGATGTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGGTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCCGCggcagttcaggcagtt < 5:434318/140‑1 (MQ=255)
aGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACATCGCGGACCG‑GTTGCCAGAGTTGTGCGGGGCGCTCCGGCGGCgggcggtcaggccggtcact > 6:342762/1‑138 (MQ=255)
ggTGTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaatc < 2:22964/140‑1 (MQ=255)
gTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTTCCG‑TTAGCCAGAGTTTTACGGCGCTCTCCCGCTGCGGCAGTTCAGGCAGTtcaat > 8:542893/1‑138 (MQ=255)
gTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTGGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaatca < 6:815217/140‑1 (MQ=255)
gTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTGCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTtcaatca < 1:111005/140‑1 (MQ=255)
ccATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCg < 2:34572/140‑1 (MQ=255)
ccATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCg < 2:864792/140‑1 (MQ=255)
ccATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACAG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCg < 2:898540/140‑1 (MQ=255)
tgctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGcc < 6:1110125/140‑1 (MQ=255)
gctgctAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCa < 1:367650/140‑1 (MQ=255)
gctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCa < 4:629281/140‑1 (MQ=255)
gctgcCAGGCGCTGATGTGTCAGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCG‑TTTGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCATCTGCTTACCTTGCGGGCCa < 3:59444/140‑1 (MQ=255)
ctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCaa < 1:954972/140‑1 (MQ=255)
gcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCaa < 7:996349/138‑1 (MQ=255)
gcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACa < 4:518721/140‑1 (MQ=255)
gcCAGGCGCTGATGTGGCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTGAATCAACTGCTTACCTTGCGGGCCAACa < 1:677900/140‑1 (MQ=255)
aGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGc < 3:446127/65‑1 (MQ=255)
aGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGc > 4:446127/1‑65 (MQ=255)
gcgcTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCag < 5:105706/140‑1 (MQ=255)
gcgcTGATGTGTCCGGATTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATcc < 7:320334/138‑1 (MQ=255)
cTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAgg < 3:874212/140‑1 (MQ=255)
tCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACGCGTACCC‑TTAGACCGAGTTGTACGGCGCACACCGGCGGGGGCAGTTCACGCAGTTCAATCAACAGCTTACCTTGCGGGCCAACATCCCGAGGCACATCaa > 2:931106/1‑139 (MQ=255)
tCCGGCTTCTGACCATGCGGTCGAGTTTTGTTGAAAAAAGCGTACAG‑TTAGACAATCTTTTACGGCGATATACGGCGGCGGCAGTTAATGCGTGAGAAACATCATCTTTACTTGCCGGGCAAGATCAAGAGGCACttacc > 2:679098/1‑137 (MQ=255)
cGGCTTCTGACCATGCGGTCGCGGTTTGTTGAACTACGCGTAACG‑TTTTCCAGAGTTTTACGGCGCAATACCCGAGCGGGAGTTAACGCAGTTGAAAAAACAGCTTACCGTGCGGGGCCACATACACAGGCACttacc > 8:738889/1‑135 (MQ=255)
tCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGATGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGc < 4:140570/140‑1 (MQ=255)
tGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGc < 8:425849/138‑1 (MQ=255)
gACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAg < 2:539685/140‑1 (MQ=255)
aTGCGGTCGCGTTTGGTTGCACTACGCGTACAG‑TTAGCCAGAGTTGTCCTGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGc < 2:1014405/140‑1 (MQ=255)
cGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTg < 4:748595/140‑1 (MQ=255)
ggTCGCGTTTGGTTGCACTACGCGTACCG‑GTAGCCAGAGGTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGc < 5:465139/140‑1 (MQ=255)
gcgcgTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGc < 7:525425/137‑1 (MQ=255)
gcgTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATc < 5:536163/140‑1 (MQ=255)
tttGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATcc < 8:161974/138‑1 (MQ=255)
tttGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 1:1046185/140‑1 (MQ=255)
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CTCGATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCG‑TTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAG > NZ_CP022686/3935185‑3935463
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
