Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F36 I0 R1
|
107 |
8366.7 |
6299831 |
98.3% |
6192733 |
135.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,935,324 |
T→G |
18.3% |
N705T (AAC→ACC) |
lacZ ← |
beta‑galactosidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,935,324 | 0 | T | G | 18.3%
| 128.4
/ 10.9
| 100 | N705T (AAC→ACC) | lacZ | beta‑galactosidase |
| Reads supporting (aligned to +/- strand): ref base T (27/52); new base G (16/4); total (43/57) |
| Fisher's exact test for biased strand distribution p-value = 3.01e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 106 total aligned reads displayed.
ATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAG > NZ_CP022686/3935189‑3935463
|
aTGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGttt < 2:28814/138‑1 (MQ=255)
aTGCAAAAATCCGTTCCGCTGGTGGTCAGTGGAGGGATGGCGGGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTgg < 6:91536/140‑1 (MQ=255)
tGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGt > 5:415646/1‑140 (MQ=255)
cAAAAATCCGTTCCGCTGGTGGTCAGTTGATGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCAAGACGCCATTGCTGCCATGCGCTGATGTGTCCGGCTTCTCACCATGCGGTCGCGTTTGGt > 4:347387/1‑138 (MQ=255)
cAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGt > 2:179590/1‑138 (MQ=255)
cAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGt > 1:137746/1‑138 (MQ=255)
cAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCATCTGACCATGCGGTCGCGGTTGGt > 1:190192/1‑138 (MQ=255)
cAAAAATCCGTTCCGATGGTGGACAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGATGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGt > 3:201291/1‑138 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACTCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTTCCAGGCGCTGATTTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc < 8:663548/140‑1 (MQ=255)
aaaTCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCAc > 7:143212/1‑140 (MQ=255)
aaaTCCGGGCCGCTGGTGGGCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGGTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTGCTGACCATGCGGTCGCGTTTGGTTGCAc < 5:587430/140‑1 (MQ=255)
cGTTCCGCGGGTGGGCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGGTTTCCGCCAGACGCCAGTGCTGCCCGGCGCTGATGTGGCCGGCTTCAGACCAGGCGGTCGCGTTTGGTTGCACTCcgc > 6:313091/1‑140 (MQ=255)
accGCTGGTGGTCAGTTGTCGGATGGCGTGGGACGCGGAGGGGAGTGTCACGGTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCACTACGCGTa < 7:75356/139‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGTTGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 7:56318/140‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAc < 4:436074/138‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAc < 2:725614/138‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAc < 4:283794/138‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTAc < 3:607331/138‑1 (MQ=255)
gCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 8:143212/140‑1 (MQ=255)
tggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGGTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGc < 5:628292/140‑1 (MQ=255)
tggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGGTGCACTACGCGTACCGTTAGc < 7:448805/140‑1 (MQ=255)
ggtCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTTGTTGCACAACGCGGACCGTTAg > 1:11931/1‑138 (MQ=255)
cggtGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCag < 2:786584/135‑1 (MQ=255)
aGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGATGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTg < 4:146578/138‑1 (MQ=255)
gATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCgg < 6:351620/140‑1 (MQ=255)
gATGGCGTGGGACGAGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCgg < 6:351621/140‑1 (MQ=255)
aTGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGGTGGACTACACGATCCGGTAGCCAGCGTTGGccc > 1:460936/1‑137 (MQ=255)
tGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGgcg < 6:736595/140‑1 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTAACAGTACCGTTAGCCAGATTTTTACgggggg > 6:159940/1‑136 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTCCCGGTAGGCACAGGTGTCCGgcgcg > 6:296868/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTAAGCGTACCGTTTGCCACACTTGTGCGgcgcg > 5:730215/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTTGTTGCACTACGCGGACCGTTTGCCAGAGTTGTCCGgcgcg > 6:232030/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTTGTTGCACAACGCGTACCGGTTGCCACAGTTGTGCGgggcg > 7:3402/1‑139 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGGCCTAAGGGTTACGTTAGCCAGAGTTGTCCGgcg > 1:129373/1‑138 (MQ=255)
gCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCCCTACGCGTACCGGTAGCCAGAGTTGTgcggcg > 1:125579/1‑138 (MQ=255)
gggggACGCGGAGGTGAGTGTCACGCTGAGGTTTTCCGCCAGTCGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGGCGCGTTTGGTTGCACTCCGCGTACCGTTAGCCAGCGTTGTCCGGCGctct < 5:541401/138‑1 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCTCGATGAGGTTTTCAGCCAGACGCCATTGATGCCAGGCGCTGATGTGTCCGGCTTCTGACCATTCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGct < 1:469209/138‑1 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGCCGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTTGACTACGCGTTCCGGTATCCCGAGTTGTTCGgcgcg > 1:491182/1‑137 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTTCACAACACCTAACGTTATACAGAGTTTTACgggccg > 1:416108/1‑134 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGGCCTAAGCGTAACGTTTGCCAGATTTGTCCGgcgcg > 3:176323/1‑137 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGctct < 5:220750/140‑1 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGGACCGTTAGCCAGATTTGTCCGgcgcg > 3:116569/1‑137 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGGTGCACTTCGCGTACCGGTAGCCAGAGTTGTGCGgcgcc > 2:192739/1‑137 (MQ=255)
gTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGctct < 7:529831/140‑1 (MQ=255)
gTGGGACGCGGAGGGGAGGGTCACGCTGAGGTGTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGct < 2:160947/138‑1 (MQ=255)
cgGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCCGAGTTGTCCGGCGCTCTCCGGcggg > 5:46229/1‑137 (MQ=255)
cgGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGcg > 3:624246/1‑137 (MQ=255)
cgGAGGGGAGTGTCACGCTGAGGGTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGGTGCCCTACGCGGAACGTTAGCCAGAGTTGTCCGGCGCTCTCCggcggc > 5:46226/1‑140 (MQ=255)
ggAGGGGAGTTTCACGCTGAGGTTTTCCGCCAGATGCCATTGCTGCCAGGCGCGGATGTGGCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTTGCGTTAGCCAGAGTTGTCCGGCGCGCTCCGGCTg < 2:712615/138‑1 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTg < 1:159296/138‑1 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCg < 7:144938/140‑1 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGAGGTGTCCGGCTTCTGACCATGCGGGCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTg < 2:472641/138‑1 (MQ=255)
ggAGGGGAGTGTCACGCTGAGGATTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCAGCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCg < 8:485515/140‑1 (MQ=255)
ggAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCTGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGAGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTg < 1:403894/138‑1 (MQ=255)
ggAGGGGAGTGGCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCg < 7:239782/140‑1 (MQ=255)
gggAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTAAGCGTAACGTTAGCCAGAGTTTTACCGCGCACTACGGCCGCggccg > 8:655760/1‑138 (MQ=255)
gAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg > 4:91806/1‑101 (MQ=255)
gAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCg < 3:91806/101‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttca < 4:520456/138‑1 (MQ=255)
gtCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttca < 4:136603/138‑1 (MQ=255)
tCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTATCCAGAGTTGTCAGGAGCTCTCCGGCTGCggcagttacg > 2:386033/1‑135 (MQ=255)
cACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggca < 8:428216/140‑1 (MQ=255)
cACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcagg < 2:530742/138‑1 (MQ=255)
cACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGAGGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCCCTACGCGTACCGGTATGCCTAGATGTCCGGCGCTATCCGGCTGCgggagttcaggcc > 6:265695/1‑139 (MQ=255)
cGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGGTAGCCCGAGTTGTCCGGCGCGCTCCGGCTGCggccgttaaggca > 4:618783/1‑138 (MQ=255)
cGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACAACGCGGACCGTTAGCCAGAGGTGTCCGGCGCACTCCCGCGGCggccgttcaggcagt > 5:245939/1‑140 (MQ=255)
gCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcag < 4:479783/138‑1 (MQ=255)
cTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCggcagttcaggcagt < 1:192739/138‑1 (MQ=255)
tGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGGTGGTTGCCATACGCGTAACGTTAGCCAGAGTTTTCCGGCGCGCTACGGCTGCggtagttcagggaggtaa > 8:521080/1‑136 (MQ=255)
aGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGGTTCACAAAGCGTTCCGTTTTCCAGAGTTGTCCGGCCCGCAACCGCGGGGGCAGGTAAGGCAGTttaat > 7:106312/1‑140 (MQ=255)
tttCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGGACTACGCGTTCCGTTAGCCAGGGTTGTGCGGCGGGCTGCGGCGGCGGCAGTTAAGGGAGTttaataa > 1:9232/1‑136 (MQ=255)
cGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGATTGGTTGCACTACGCGTACCGGTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCACTTCAATCAACTGCt < 5:169996/140‑1 (MQ=255)
cGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTg < 6:415646/140‑1 (MQ=255)
ccATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTg < 3:655368/138‑1 (MQ=255)
ccATTGCTGCCAGGCGCTGATGTGTCCGGCGTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTGGGCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCg < 7:421386/140‑1 (MQ=255)
tgctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGcc < 5:433621/140‑1 (MQ=255)
gctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCa < 7:531490/140‑1 (MQ=255)
gctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGGACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGc < 2:543900/138‑1 (MQ=255)
ctgcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGcc < 4:660163/138‑1 (MQ=255)
gcCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTGTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCaa < 3:23091/138‑1 (MQ=255)
cAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTACGCGTTCCGTTAGCCAGAGGTGGCCGGCGCTCGCCCGCTGCGGCAGTTCCGGCAGTTCCATCAACTGCTTACCATGgggggccaaa > 4:289806/1‑132 (MQ=255)
gcgcTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTTGTTGCGCTACGCGGACCGGTTGCCAGAGTTGTACGGCCGACTCCGGCCGCGGGAGTTCATGCAGGTTCATCACCTGCGTTCCATGCGGGCCCACCTcc > 4:117650/1‑138 (MQ=255)
gcgcTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCCCTTCGCGGACCGTTTGCCAGAGTTGTGCGGCGCTCGCCGGGGGCGGCAGTTGAGGGCCTTCCATCAACTGCGTTCCTTGGGGGGCCAAATcc > 2:255713/1‑138 (MQ=255)
gtgtCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCTGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCAc < 1:291766/138‑1 (MQ=255)
gtgtCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCAc < 3:669676/138‑1 (MQ=255)
gtgtCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCGCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTAGCGGGCCAACATCCAGAGGCAc < 4:593953/138‑1 (MQ=255)
cGGCTTCTGACCATGCGGTCGCGTTTTGTTGCACTACGCGTAACCTTAGGCAGAGTTGTGCGGCGCTCTCCGGCGGCCGCAGTTAAAGCAGGTCAATAAAAAGCTTAACATGCGGGCCCACATCCAGAGGCCCGTCAc > 2:567603/1‑138 (MQ=255)
cGGCTTCTGACCATGCGGTCGCGGTTGGTTGCACTAGGCGTACCGTTAGCCAGAGTTGTTCGTCGGTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCg < 6:456795/140‑1 (MQ=255)
ccATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAg < 1:554292/138‑1 (MQ=255)
ccATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCg < 5:244791/140‑1 (MQ=255)
ccATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCACTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAg < 4:177501/138‑1 (MQ=255)
tGCGGTCGCGTTTTGTTGCACTACGCGTACCGTTAGCCAGAGTTGTACGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGGTCAATCAACGGCTTTCCGTGGGGGGCCACATCCAGAGGCACATCACCGCGTGCCAGCGGcg > 6:226710/1‑139 (MQ=255)
cGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCt < 4:684620/138‑1 (MQ=255)
cGGTCGCGTGTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCGCTCCGGCTGCGGCAGTTCAGGCAGTGCAATCAACTGCTTACCTAGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCt < 2:1563/138‑1 (MQ=255)
cGGTCGCGGTTGGTTGCACTACGCGTACCGTTAGCCCGAGTTGTCCGGCGCTCTCCGGCTGCGGCCGGTAAGGCAGTTCAATACACTGCGTACCGTGCGGGCCACCATCCAGAGGCCCATCACCCCGTGCCAGCGGcg > 4:774705/1‑137 (MQ=255)
gcgTTTGTTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGAGCTCTCCGGCTGAGGCAGGTCAGTCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGATTGCCATc < 8:429564/140‑1 (MQ=255)
tttGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTTCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 6:662402/140‑1 (MQ=255)
tttGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATcc < 2:137746/138‑1 (MQ=255)
tttGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 8:32646/140‑1 (MQ=255)
tttGGTTGCACTACGCGGACCGTTAGCCAGAGTTGTCCGGCGCTCGCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAg < 6:273481/140‑1 (MQ=255)
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ATGCAAAAATCCGTTCCGCTGGTGGTCAGTTGAGGGATGGCGTGGGACGCGGAGGGGAGTGTCACGCTGAGGTTTTCCGCCAGACGCCATTGCTGCCAGGCGCTGATGTGTCCGGCTTCTGACCATGCGGTCGCGTTTGGTTGCACTACGCGTACCGTTAGCCAGAGTTGTCCGGCGCTCTCCGGCTGCGGCAGTTCAGGCAGTTCAATCAACTGCTTACCTTGCGGGCCAACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTGCCATCCAG > NZ_CP022686/3935189‑3935463
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
